RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 DNAH12Q6ZR08 3092 aa21.04■□□□□ 0.96
CLN3-243ENST00000635973 KLF18A0A0U1RQI7 1052 aa21.03■□□□□ 0.96
CLN3-243ENST00000635973 POTEB2H3BUK9 544 aa21.03■□□□□ 0.96
CLN3-243ENST00000635973 SNAI1O95863 264 aaPredicted RBP21.03■□□□□ 0.96
CLN3-243ENST00000635973 ALAS1P13196 640 aa21.03■□□□□ 0.96
CLN3-243ENST00000635973 ACVR2BQ13705 512 aa21.03■□□□□ 0.96
CLN3-243ENST00000635973 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.03■□□□□ 0.96
CLN3-243ENST00000635973 AGBL1Q96MI9 1066 aa21.03■□□□□ 0.96
CLN3-243ENST00000635973 ABHD16BQ9H3Z7 469 aa21.03■□□□□ 0.96
CLN3-243ENST00000635973 SPC25Q9HBM1 224 aa21.03■□□□□ 0.96
CLN3-243ENST00000635973 VAT1LQ9HCJ6 419 aa21.03■□□□□ 0.96
CLN3-243ENST00000635973 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.03■□□□□ 0.96
CLN3-243ENST00000635973 CCPG1Q9ULG6 757 aa21.03■□□□□ 0.96
CLN3-243ENST00000635973 PALM3A6NDB9 673 aaPredicted RBP21.02■□□□□ 0.96
CLN3-243ENST00000635973 ZBTB43O43298 467 aa21.02■□□□□ 0.96
CLN3-243ENST00000635973 SNX17Q15036 470 aa21.02■□□□□ 0.96
CLN3-243ENST00000635973 CDC37Q16543 378 aaPredicted RBP21.02■□□□□ 0.96
CLN3-243ENST00000635973 GPR153Q6NV75 609 aa21.02■□□□□ 0.96
CLN3-243ENST00000635973 APOA5Q6Q788 366 aa21.02■□□□□ 0.96
CLN3-243ENST00000635973 ADGRF4Q8IZF3 695 aa21.02■□□□□ 0.96
CLN3-243ENST00000635973 LENG1Q96BZ8 264 aaPredicted RBP21.02■□□□□ 0.96
CLN3-243ENST00000635973 TRERF1Q96PN7 1200 aa21.02■□□□□ 0.96
CLN3-243ENST00000635973 MAP3K14Q99558 947 aa21.02■□□□□ 0.96
CLN3-243ENST00000635973 GOLGA8AA7E2F4 631 aa21.01■□□□□ 0.95
CLN3-243ENST00000635973 GOLGA8BA8MQT2 603 aa21.01■□□□□ 0.95
CLN3-243ENST00000635973 DUSP11O75319 330 aaKnown RBP21.01■□□□□ 0.95
CLN3-243ENST00000635973 ICAM1P05362 532 aa21.01■□□□□ 0.95
CLN3-243ENST00000635973 GNAQP50148 359 aa21.01■□□□□ 0.95
CLN3-243ENST00000635973 APOBRQ0VD83 1088 aa21.01■□□□□ 0.95
CLN3-243ENST00000635973 C1orf53Q5VUE5 145 aa21.01■□□□□ 0.95
CLN3-243ENST00000635973 ARMCX2Q7L311 632 aa21.01■□□□□ 0.95
CLN3-243ENST00000635973 TSEN34Q9BSV6 310 aaKnown RBP21.01■□□□□ 0.95
CLN3-243ENST00000635973 C22orf23Q9BZE7 217 aa21.01■□□□□ 0.95
CLN3-243ENST00000635973 PDRG1Q9NUG6 133 aa21.01■□□□□ 0.95
CLN3-243ENST00000635973 PNMA2Q9UL42 364 aa21.01■□□□□ 0.95
CLN3-243ENST00000635973 BRPF3Q9ULD4 1205 aa21.01■□□□□ 0.95
CLN3-243ENST00000635973 LTBP2Q14767 1821 aa21.01■□□□□ 0.95
CLN3-243ENST00000635973 ZNF536O15090 1300 aa21.01■□□□□ 0.95
CLN3-243ENST00000635973 SYNRGQ9UMZ2 1314 aa21.01■□□□□ 0.95
CLN3-243ENST00000635973 A0A1W2PQ45 241 aaPredicted RBP21■□□□□ 0.95
CLN3-243ENST00000635973 A0A1W2PQY0 241 aa21■□□□□ 0.95
CLN3-243ENST00000635973 TLE2Q04725 743 aa21■□□□□ 0.95
CLN3-243ENST00000635973 RTN1Q16799 776 aa21■□□□□ 0.95
CLN3-243ENST00000635973 CCDC144BQ3MJ40 725 aa21■□□□□ 0.95
CLN3-243ENST00000635973 HOMER1Q86YM7 354 aa21■□□□□ 0.95
CLN3-243ENST00000635973 A1CFQ9NQ94 594 aaKnown RBP21■□□□□ 0.95
CLN3-243ENST00000635973 STARD7Q9NQZ5 370 aa21■□□□□ 0.95
CLN3-243ENST00000635973 MOXD2PA6NHM9 499 aa20.99■□□□□ 0.95
CLN3-243ENST00000635973 ASB14A6NK59 587 aa20.99■□□□□ 0.95
CLN3-243ENST00000635973 ADAMTS4O75173 837 aa20.99■□□□□ 0.95
CLN3-243ENST00000635973 C6orf222P0C671 652 aaPredicted RBP20.99■□□□□ 0.95
CLN3-243ENST00000635973 ACLYP53396 1101 aa20.99■□□□□ 0.95
CLN3-243ENST00000635973 CNTN2Q02246 1040 aa20.99■□□□□ 0.95
CLN3-243ENST00000635973 NOL8Q76FK4 1167 aaKnown RBP20.99■□□□□ 0.95
CLN3-243ENST00000635973 FBXL16Q8N461 479 aa20.99■□□□□ 0.95
CLN3-243ENST00000635973 DEFB123Q8N688 67 aa20.99■□□□□ 0.95
CLN3-243ENST00000635973 FANCBQ8NB91 859 aa20.99■□□□□ 0.95
CLN3-243ENST00000635973 PCSK9Q8NBP7 692 aaKnown RBP20.99■□□□□ 0.95
CLN3-243ENST00000635973 SLC17A8Q8NDX2 589 aa20.99■□□□□ 0.95
CLN3-243ENST00000635973 VTI1AQ96AJ9 217 aa20.99■□□□□ 0.95
CLN3-243ENST00000635973 LZTS2Q9BRK4 669 aa20.99■□□□□ 0.95
CLN3-243ENST00000635973 JMJD4Q9H9V9 463 aa20.99■□□□□ 0.95
CLN3-243ENST00000635973 RBM28Q9NW13 759 aaKnown RBP20.99■□□□□ 0.95
CLN3-243ENST00000635973 PQBP1O60828 265 aaKnown RBP20.98■□□□□ 0.95
CLN3-243ENST00000635973 CLTBP09497 229 aa20.98■□□□□ 0.95
CLN3-243ENST00000635973 METAP2P50579 478 aaKnown RBP eCLIP20.98■□□□□ 0.95
CLN3-243ENST00000635973 KCNA10Q16322 511 aa20.98■□□□□ 0.95
CLN3-243ENST00000635973 QRICH1Q2TAL8 776 aa20.98■□□□□ 0.95
CLN3-243ENST00000635973 USH1GQ495M9 461 aa20.98■□□□□ 0.95
CLN3-243ENST00000635973 BADQ92934 168 aa20.98■□□□□ 0.95
CLN3-243ENST00000635973 GLT1D1Q96MS3 346 aa20.98■□□□□ 0.95
CLN3-243ENST00000635973 PDLIM7Q9NR12 457 aa20.98■□□□□ 0.95
CLN3-243ENST00000635973 PLEKHA8P1O95397 391 aa20.97■□□□□ 0.95
CLN3-243ENST00000635973 RCAN1P53805 252 aa20.97■□□□□ 0.95
CLN3-243ENST00000635973 TOB2Q14106 344 aaPredicted RBP20.97■□□□□ 0.95
CLN3-243ENST00000635973 NSMFQ6X4W1 530 aa20.97■□□□□ 0.95
CLN3-243ENST00000635973 TMTC3Q6ZXV5 915 aa20.97■□□□□ 0.95
CLN3-243ENST00000635973 Q7L0L9 218 aa20.97■□□□□ 0.95
CLN3-243ENST00000635973 FBXO11Q86XK2 927 aa20.97■□□□□ 0.95
CLN3-243ENST00000635973 FAM133AQ8N9E0 248 aa20.97■□□□□ 0.95
CLN3-243ENST00000635973 PIBF1Q8WXW3 757 aa20.97■□□□□ 0.95
CLN3-243ENST00000635973 IL17RAQ96F46 866 aa20.97■□□□□ 0.95
CLN3-243ENST00000635973 AGXT2Q9BYV1 514 aa20.97■□□□□ 0.95
CLN3-243ENST00000635973 DCDC2CA8MYV0 355 aa20.96■□□□□ 0.95
CLN3-243ENST00000635973 ZBTB5O15062 677 aa20.96■□□□□ 0.95
CLN3-243ENST00000635973 RAG1P15918 1043 aa20.96■□□□□ 0.95
CLN3-243ENST00000635973 GNASQ5JWF2 1037 aa20.96■□□□□ 0.95
CLN3-243ENST00000635973 CMTR1Q8N1G2 835 aaKnown RBP20.96■□□□□ 0.95
CLN3-243ENST00000635973 KLHDC9Q8NEP7 349 aa20.96■□□□□ 0.95
CLN3-243ENST00000635973 RRP36Q96EU6 259 aaKnown RBP20.96■□□□□ 0.95
CLN3-243ENST00000635973 FGD4Q96M96 766 aa20.96■□□□□ 0.95
CLN3-243ENST00000635973 PIGSQ96S52 555 aa20.96■□□□□ 0.95
CLN3-243ENST00000635973 SPZ1Q9BXG8 430 aa20.96■□□□□ 0.95
CLN3-243ENST00000635973 RIOX1Q9H6W3 641 aa20.96■□□□□ 0.95
CLN3-243ENST00000635973 TMEM39AQ9NV64 488 aa20.96■□□□□ 0.95
CLN3-243ENST00000635973 SEC63Q9UGP8 760 aaKnown RBP20.96■□□□□ 0.95
CLN3-243ENST00000635973 CCDC196A0A1B0GTZ2 297 aa20.95■□□□□ 0.94
CLN3-243ENST00000635973 NEK4P51957 841 aa20.95■□□□□ 0.94
CLN3-243ENST00000635973 TNFAIP2Q03169 654 aa20.95■□□□□ 0.94
CLN3-243ENST00000635973 MUM1L1Q5H9M0 696 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms