RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	THBD	P07204	575 aa		4.73	□□□□□ -1.65
CNOT1-223	ENST00000628857	GFRA1	P56159	465 aa		4.73	□□□□□ -1.65
CNOT1-223	ENST00000628857	PPP2R2A	P63151	447 aa		4.73	□□□□□ -1.65
CNOT1-223	ENST00000628857	KCNAB2	Q13303	367 aa		4.73	□□□□□ -1.65
CNOT1-223	ENST00000628857	RSPO2	Q6UXX9	243 aa	Predicted RBP	4.73	□□□□□ -1.65
CNOT1-223	ENST00000628857	NSUN3	Q9H649	340 aa	Known RBP	4.73	□□□□□ -1.65
CNOT1-223	ENST00000628857	C7orf72	A4D263	438 aa		4.72	□□□□□ -1.65
CNOT1-223	ENST00000628857	PDE6B	P35913	854 aa		4.72	□□□□□ -1.65
CNOT1-223	ENST00000628857	MAPKAPK2	P49137	400 aa		4.72	□□□□□ -1.65
CNOT1-223	ENST00000628857	SLC35F1	Q5T1Q4	408 aa		4.72	□□□□□ -1.65
CNOT1-223	ENST00000628857	PAQR3	Q6TCH7	311 aa		4.72	□□□□□ -1.65
CNOT1-223	ENST00000628857	DPH6	Q7L8W6	267 aa		4.72	□□□□□ -1.65
CNOT1-223	ENST00000628857		Q8N1Y9	231 aa		4.72	□□□□□ -1.65
CNOT1-223	ENST00000628857	JMY	Q8N9B5	988 aa		4.72	□□□□□ -1.65
CNOT1-223	ENST00000628857	NETO2	Q8NC67	525 aa		4.72	□□□□□ -1.65
CNOT1-223	ENST00000628857	BTN2A2	Q8WVV5	523 aa		4.72	□□□□□ -1.65
CNOT1-223	ENST00000628857	KCTD13	Q8WZ19	329 aa		4.72	□□□□□ -1.65
CNOT1-223	ENST00000628857	UBXN4	Q92575	508 aa		4.72	□□□□□ -1.65
CNOT1-223	ENST00000628857	PPP1R14A	Q96A00	147 aa		4.72	□□□□□ -1.65
CNOT1-223	ENST00000628857	C1orf159	Q96HA4	380 aa		4.72	□□□□□ -1.65
CNOT1-223	ENST00000628857	MTA3	Q9BTC8	594 aa		4.72	□□□□□ -1.65
CNOT1-223	ENST00000628857	C8A	P07357	584 aa		4.71	□□□□□ -1.66
CNOT1-223	ENST00000628857	SNRPB2	P08579	225 aa	Known RBP	4.71	□□□□□ -1.66
CNOT1-223	ENST00000628857	TMEM253	P0C7T8	217 aa		4.71	□□□□□ -1.66
CNOT1-223	ENST00000628857	PLS3	P13797	630 aa		4.71	□□□□□ -1.66
CNOT1-223	ENST00000628857	YBX3	P16989	372 aa	Known RBP eCLIP	4.71	□□□□□ -1.66	5e-11	■■■□□ 16.8
CNOT1-223	ENST00000628857	ADGRF1	Q5T601	910 aa		4.71	□□□□□ -1.66
CNOT1-223	ENST00000628857	SCUBE1	Q8IWY4	988 aa		4.71	□□□□□ -1.66
CNOT1-223	ENST00000628857	LZTR1	Q8N653	840 aa		4.71	□□□□□ -1.66
CNOT1-223	ENST00000628857	KCNN1	Q92952	543 aa		4.71	□□□□□ -1.66
CNOT1-223	ENST00000628857	DIRC2	Q96SL1	478 aa		4.71	□□□□□ -1.66
CNOT1-223	ENST00000628857	ZFYVE21	Q9BQ24	234 aa		4.71	□□□□□ -1.66
CNOT1-223	ENST00000628857	AARSD1	Q9BTE6	412 aa	Known RBP	4.71	□□□□□ -1.66
CNOT1-223	ENST00000628857	SPATA9	Q9BWV2	254 aa		4.71	□□□□□ -1.66
CNOT1-223	ENST00000628857	MCOLN1	Q9GZU1	580 aa		4.71	□□□□□ -1.66
CNOT1-223	ENST00000628857	GPRC5C	Q9NQ84	441 aa		4.71	□□□□□ -1.66
CNOT1-223	ENST00000628857	KLHL14	Q9P2G3	628 aa		4.71	□□□□□ -1.66
CNOT1-223	ENST00000628857	IRS2	Q9Y4H2	1338 aa		4.71	□□□□□ -1.66
CNOT1-223	ENST00000628857	CCDC163	A0A0D9SF12	145 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	MYOCOS	A0A1B0GUC4	107 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857		A0A1W2PQJ5	194 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	NFIB	O00712	420 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	MEFV	O15553	781 aa	Predicted RBP	4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	TBX1	O43435	398 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	ZBTB7A	O95365	584 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	KRT1	P04264	644 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	DBH	P09172	617 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	MSL3P1	P0C860	447 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	GLI4	P10075	376 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	LTBR	P36941	435 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	RASA3	Q14644	834 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	SLC9A5	Q14940	896 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	PKN1	Q16512	942 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	SYDE1	Q6ZW31	735 aa	Predicted RBP	4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	CABP7	Q86V35	215 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	CPNE8	Q86YQ8	564 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	RIOX2	Q8IUF8	465 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	SIRT2	Q8IXJ6	389 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	DIO2	Q92813	273 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	KRTAP4-12	Q9BQ66	201 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	GPR27	Q9NS67	375 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	CLEC1B	Q9P126	229 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	TIMM13	Q9Y5L4	95 aa	Predicted RBP	4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857		X6R8D5	127 aa		4.7	□□□□□ -1.66
CNOT1-223	ENST00000628857	TRAV20	A0A0B4J274	112 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857		H7BY64	318 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	ARNTL	O00327	626 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	MYO1B	O43795	1136 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	DLX3	O60479	287 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	PPP1R11	O60927	126 aa	Predicted RBP	4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	ECI1	P42126	302 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	RPL11	P62913	178 aa	Known RBP	4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	IFRD2	Q12894	506 aa	Predicted RBP	4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	KIR3DS1	Q14943	382 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	RAB3GAP1	Q15042	981 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	NFE2L2	Q16236	605 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	KRTAP19-4	Q3LI73	84 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	MTERF2	Q49AM1	385 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	ZNF648	Q5T619	568 aa	Predicted RBP	4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	MROH9	Q5TGP6	573 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	NSMF	Q6X4W1	530 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	ZNF605	Q86T29	641 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	TMEM145	Q8NBT3	493 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	PLEKHO2	Q8TD55	490 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	DCAF4	Q8WV16	495 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	DPF3	Q92784	378 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	TSPAN17	Q96FV3	270 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	PEX11G	Q96HA9	241 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	DEPDC7	Q96QD5	511 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	KRTAP9-2	Q9BYQ4	174 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	ARHGEF4	Q9NR80	690 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	SIRT5	Q9NXA8	310 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	NUDT5	Q9UKK9	219 aa		4.69	□□□□□ -1.66
CNOT1-223	ENST00000628857	DBX1	A6NMT0	343 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	ETV2	O00321	342 aa	Predicted RBP	4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	N4BP3	O15049	544 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	ADCY3	O60266	1144 aa		4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	PABPC1	P11940	636 aa	Known RBP	4.68	□□□□□ -1.66
CNOT1-223	ENST00000628857	VIPR1	P32241	457 aa		4.68	□□□□□ -1.66

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms