RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 GJA9P57773 515 aa5.28□□□□□ -1.56
SCN1A-208ENST00000625916 PUM1Q14671 1186 aaKnown RBP eCLIP5.28□□□□□ -1.56
SCN1A-208ENST00000625916 RUFY4Q6ZNE9 571 aa5.28□□□□□ -1.56
SCN1A-208ENST00000625916 B3GNT8Q7Z7M8 397 aa5.28□□□□□ -1.56
SCN1A-208ENST00000625916 CNOT11Q9UKZ1 510 aaKnown RBP5.28□□□□□ -1.56
SCN1A-208ENST00000625916 DIS3Q9Y2L1 958 aaKnown RBP5.28□□□□□ -1.56
SCN1A-208ENST00000625916 A0A087WZG4 1122 aa5.27□□□□□ -1.57
SCN1A-208ENST00000625916 GLI4P10075 376 aa5.27□□□□□ -1.57
SCN1A-208ENST00000625916 PMLP29590 882 aa5.27□□□□□ -1.57
SCN1A-208ENST00000625916 CNR2P34972 360 aa5.27□□□□□ -1.57
SCN1A-208ENST00000625916 ZNF76P36508 570 aa5.27□□□□□ -1.57
SCN1A-208ENST00000625916 EEF1DP3Q658K8 133 aa5.27□□□□□ -1.57
SCN1A-208ENST00000625916 CARFQ8N187 725 aa5.27□□□□□ -1.57
SCN1A-208ENST00000625916 LZTR1Q8N653 840 aa5.27□□□□□ -1.57
SCN1A-208ENST00000625916 ADCY4Q8NFM4 1077 aa5.27□□□□□ -1.57
SCN1A-208ENST00000625916 NUDT5Q9UKK9 219 aa5.27□□□□□ -1.57
SCN1A-208ENST00000625916 PPT2Q9UMR5 302 aa5.27□□□□□ -1.57
SCN1A-208ENST00000625916 RWDD3Q9Y3V2 267 aa5.27□□□□□ -1.57
SCN1A-208ENST00000625916 RCSD1Q6JBY9 416 aa5.26□□□□□ -1.57
SCN1A-208ENST00000625916 SMARCC2Q8TAQ2 1214 aa5.26□□□□□ -1.57
SCN1A-208ENST00000625916 TSPAN17Q96FV3 270 aa5.26□□□□□ -1.57
SCN1A-208ENST00000625916 PEX11GQ96HA9 241 aa5.26□□□□□ -1.57
SCN1A-208ENST00000625916 NTMQ9P121 344 aa5.26□□□□□ -1.57
SCN1A-208ENST00000625916 ZNF214Q9UL59 606 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-208ENST00000625916 MYRFQ9Y2G1 1151 aa5.26□□□□□ -1.57
SCN1A-208ENST00000625916 STXBP3O00186 592 aa5.25□□□□□ -1.57
SCN1A-208ENST00000625916 AURKAO14965 403 aa5.25□□□□□ -1.57
SCN1A-208ENST00000625916 CBFA2T2O43439 604 aa5.25□□□□□ -1.57
SCN1A-208ENST00000625916 NOBOXO60393 691 aa5.25□□□□□ -1.57
SCN1A-208ENST00000625916 SARSP49591 514 aaKnown RBP5.25□□□□□ -1.57
SCN1A-208ENST00000625916 SEPHS1P49903 392 aa5.25□□□□□ -1.57
SCN1A-208ENST00000625916 DLX2Q07687 328 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-208ENST00000625916 TRIM26Q12899 539 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-208ENST00000625916 DPY19L1Q2PZI1 675 aa5.25□□□□□ -1.57
SCN1A-208ENST00000625916 GNPTABQ3T906 1256 aa5.25□□□□□ -1.57
SCN1A-208ENST00000625916 TTLL7Q6ZT98 887 aa5.25□□□□□ -1.57
SCN1A-208ENST00000625916 ADAT2Q7Z6V5 191 aaKnown RBP5.25□□□□□ -1.57
SCN1A-208ENST00000625916 NETO2Q8NC67 525 aa5.25□□□□□ -1.57
SCN1A-208ENST00000625916 RBBP8NLQ8NC74 664 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-208ENST00000625916 USP33Q8TEY7 942 aa5.25□□□□□ -1.57
SCN1A-208ENST00000625916 CRBNQ96SW2 442 aa5.25□□□□□ -1.57
SCN1A-208ENST00000625916 HAUS7Q99871 368 aa5.25□□□□□ -1.57
SCN1A-208ENST00000625916 GBP3Q9H0R5 595 aa5.25□□□□□ -1.57
SCN1A-208ENST00000625916 WHRNQ9P202 907 aa5.25□□□□□ -1.57
SCN1A-208ENST00000625916 DUSP10Q9Y6W6 482 aa5.25□□□□□ -1.57
SCN1A-208ENST00000625916 VAMP4O75379 141 aa5.24□□□□□ -1.57
SCN1A-208ENST00000625916 MAGEA10P43363 369 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-208ENST00000625916 SLC9A5Q14940 896 aa5.24□□□□□ -1.57
SCN1A-208ENST00000625916 ZNF394Q53GI3 561 aa5.24□□□□□ -1.57
SCN1A-208ENST00000625916 HEATR6Q6AI08 1181 aaKnown RBP5.24□□□□□ -1.57
SCN1A-208ENST00000625916 CPNE8Q86YQ8 564 aa5.24□□□□□ -1.57
SCN1A-208ENST00000625916 CPA5Q8WXQ8 436 aa5.24□□□□□ -1.57
SCN1A-208ENST00000625916 ZBTB8AQ96BR9 441 aa5.24□□□□□ -1.57
SCN1A-208ENST00000625916 NOX5Q96PH1 765 aa5.24□□□□□ -1.57
SCN1A-208ENST00000625916 MCMBPQ9BTE3 642 aa5.24□□□□□ -1.57
SCN1A-208ENST00000625916 LNPKQ9C0E8 428 aa5.24□□□□□ -1.57
SCN1A-208ENST00000625916 GULP1Q9UBP9 304 aa5.24□□□□□ -1.57
SCN1A-208ENST00000625916 PCDHGB7Q9Y5F8 929 aa5.24□□□□□ -1.57
SCN1A-208ENST00000625916 LTBP3Q9NS15 1303 aa5.23□□□□□ -1.57
SCN1A-208ENST00000625916 SMARCA5O60264 1052 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-208ENST00000625916 PPM1BO75688 479 aa5.23□□□□□ -1.57
SCN1A-208ENST00000625916 ZBTB7AO95365 584 aa5.23□□□□□ -1.57
SCN1A-208ENST00000625916 CACNB2Q08289 660 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-208ENST00000625916 CCDC81Q6ZN84 652 aa5.23□□□□□ -1.57
SCN1A-208ENST00000625916 SMPD4Q9NXE4 827 aa5.23□□□□□ -1.57
SCN1A-208ENST00000625916 FBLN5Q9UBX5 448 aa5.23□□□□□ -1.57
SCN1A-208ENST00000625916 BACE2Q9Y5Z0 518 aa5.23□□□□□ -1.57
SCN1A-208ENST00000625916 SLC12A7Q9Y666 1083 aa5.23□□□□□ -1.57
SCN1A-208ENST00000625916 NPHP3-ACAD11A0A0J9YXS1 232 aa5.22□□□□□ -1.57
SCN1A-208ENST00000625916 C2orf71A6NGG8 1288 aa5.22□□□□□ -1.57
SCN1A-208ENST00000625916 ITGB3P05106 788 aa5.22□□□□□ -1.57
SCN1A-208ENST00000625916 PAMP19021 973 aa5.22□□□□□ -1.57
SCN1A-208ENST00000625916 AMPD2Q01433 879 aa5.22□□□□□ -1.57
SCN1A-208ENST00000625916 SMAD4Q13485 552 aaKnown RBP5.22□□□□□ -1.57
SCN1A-208ENST00000625916 LDLRAD1Q5T700 205 aa5.22□□□□□ -1.57
SCN1A-208ENST00000625916 WWC2Q6AWC2 1192 aa5.22□□□□□ -1.57
SCN1A-208ENST00000625916 ZNF761Q86XN6 746 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-208ENST00000625916 DDX11Q96FC9 970 aa5.22□□□□□ -1.57
SCN1A-208ENST00000625916 FGD4Q96M96 766 aa5.22□□□□□ -1.57
SCN1A-208ENST00000625916 KLHL25Q9H0H3 589 aa5.22□□□□□ -1.57
SCN1A-208ENST00000625916 PHAXQ9H814 394 aaKnown RBP5.22□□□□□ -1.57
SCN1A-208ENST00000625916 SPATA6Q9NWH7 488 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-208ENST00000625916 SUGT1Q9Y2Z0 365 aa5.22□□□□□ -1.57
SCN1A-208ENST00000625916 TRBV23OR9-2A0A075B6M9 112 aa5.21□□□□□ -1.58
SCN1A-208ENST00000625916 NPHS1O60500 1241 aa5.21□□□□□ -1.58
SCN1A-208ENST00000625916 PPP1R11O60927 126 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-208ENST00000625916 EPHX1P07099 455 aa5.21□□□□□ -1.58
SCN1A-208ENST00000625916 CYP2C8P10632 490 aa5.21□□□□□ -1.58
SCN1A-208ENST00000625916 ADAM17P78536 824 aa5.21□□□□□ -1.58
SCN1A-208ENST00000625916 FANCCQ00597 558 aa5.21□□□□□ -1.58
SCN1A-208ENST00000625916 SLC7A5Q01650 507 aa5.21□□□□□ -1.58
SCN1A-208ENST00000625916 MTA3Q9BTC8 594 aa5.21□□□□□ -1.58
SCN1A-208ENST00000625916 BACH2Q9BYV9 841 aa5.21□□□□□ -1.58
SCN1A-208ENST00000625916 CGGBP1Q9UFW8 167 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-208ENST00000625916 PCDHB10Q9UN67 800 aa5.21□□□□□ -1.58
SCN1A-208ENST00000625916 FUCA1P04066 466 aa5.2□□□□□ -1.58
SCN1A-208ENST00000625916 NTRK1P04629 796 aa5.2□□□□□ -1.58
SCN1A-208ENST00000625916 EIF6P56537 245 aaKnown RBP5.2□□□□□ -1.58
SCN1A-208ENST00000625916 RBM10P98175 930 aaKnown RBP5.2□□□□□ -1.58
SCN1A-208ENST00000625916 ADAMTS17Q8TE56 1095 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms