RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 TRPV6Q9H1D0 765 aa29.36■■■□□ 2.29
PTPRF-216ENST00000617451 TTC28Q96AY4 2481 aa29.35■■■□□ 2.29
PTPRF-216ENST00000617451 PDHBP11177 359 aa29.35■■■□□ 2.29
PTPRF-216ENST00000617451 PSMC6P62333 389 aa29.35■■■□□ 2.29
PTPRF-216ENST00000617451 NMIQ13287 307 aaPredicted RBP29.35■■■□□ 2.29
PTPRF-216ENST00000617451 CLEC4DQ8WXI8 215 aa29.35■■■□□ 2.29
PTPRF-216ENST00000617451 TTC14Q96N46 770 aa29.35■■■□□ 2.29
PTPRF-216ENST00000617451 UMODL1Q5DID0 1318 aa29.35■■■□□ 2.29
PTPRF-216ENST00000617451 B4GALT4O60513 344 aa29.34■■■□□ 2.29
PTPRF-216ENST00000617451 HAND2P61296 217 aa29.34■■■□□ 2.29
PTPRF-216ENST00000617451 NOC4LQ9BVI4 516 aaKnown RBP29.34■■■□□ 2.29
PTPRF-216ENST00000617451 PNMA2Q9UL42 364 aa29.34■■■□□ 2.29
PTPRF-216ENST00000617451 RBM47A0AV96 593 aaKnown RBP29.33■■■□□ 2.29
PTPRF-216ENST00000617451 PTPDC1A2A3K4 754 aa29.33■■■□□ 2.29
PTPRF-216ENST00000617451 FGBP02675 491 aa29.33■■■□□ 2.29
PTPRF-216ENST00000617451 PCP11498 1178 aaKnown RBP29.33■■■□□ 2.29
PTPRF-216ENST00000617451 AKNAD1Q5T1N1 836 aa29.33■■■□□ 2.29
PTPRF-216ENST00000617451 WDR11Q9BZH6 1224 aa29.33■■■□□ 2.29
PTPRF-216ENST00000617451 CXXC1Q9P0U4 656 aaPredicted RBP29.33■■■□□ 2.29
PTPRF-216ENST00000617451 CCDC171Q6TFL3 1326 aa29.33■■■□□ 2.29
PTPRF-216ENST00000617451 SNHG28P0DPA3 235 aa29.32■■■□□ 2.28
PTPRF-216ENST00000617451 ZNF543Q08ER8 600 aa29.32■■■□□ 2.28
PTPRF-216ENST00000617451 SLC30A10Q6XR72 485 aa29.32■■■□□ 2.28
PTPRF-216ENST00000617451 MFSD6Q6ZSS7 791 aa29.32■■■□□ 2.28
PTPRF-216ENST00000617451 USP38Q8NB14 1042 aa29.32■■■□□ 2.28
PTPRF-216ENST00000617451 MTIF3Q9H2K0 278 aaKnown RBP29.32■■■□□ 2.28
PTPRF-216ENST00000617451 MYO9BQ13459 2157 aa29.31■■■□□ 2.28
PTPRF-216ENST00000617451 TRIM6-TRIM34B2RNG4 842 aa29.31■■■□□ 2.28
PTPRF-216ENST00000617451 CCL23P55773 120 aa29.31■■■□□ 2.28
PTPRF-216ENST00000617451 RNF207Q6ZRF8 634 aa29.31■■■□□ 2.28
PTPRF-216ENST00000617451 LNPKQ9C0E8 428 aa29.31■■■□□ 2.28
PTPRF-216ENST00000617451 WNT8AQ9H1J5 351 aa29.31■■■□□ 2.28
PTPRF-216ENST00000617451 ALDH8A1Q9H2A2 487 aaPredicted RBP29.31■■■□□ 2.28
PTPRF-216ENST00000617451 POLR3EQ9NVU0 708 aa29.31■■■□□ 2.28
PTPRF-216ENST00000617451 CHD7Q9P2D1 2997 aa29.3■■■□□ 2.28
PTPRF-216ENST00000617451 WDR19Q8NEZ3 1342 aa29.3■■■□□ 2.28
PTPRF-216ENST00000617451 CALML3P27482 149 aa29.3■■■□□ 2.28
PTPRF-216ENST00000617451 TBC1D10CQ8IV04 446 aa29.3■■■□□ 2.28
PTPRF-216ENST00000617451 CPT1AP50416 773 aa29.29■■■□□ 2.28
PTPRF-216ENST00000617451 RPS6P62753 249 aaKnown RBP29.29■■■□□ 2.28
PTPRF-216ENST00000617451 PURAQ00577 322 aaKnown RBP29.29■■■□□ 2.28
PTPRF-216ENST00000617451 RAB30Q15771 203 aa29.29■■■□□ 2.28
PTPRF-216ENST00000617451 OTOP2Q7RTS6 562 aa29.29■■■□□ 2.28
PTPRF-216ENST00000617451 RILPL2Q969X0 211 aa29.29■■■□□ 2.28
PTPRF-216ENST00000617451 MSRAQ9UJ68 235 aa29.29■■■□□ 2.28
PTPRF-216ENST00000617451 EDNRBP24530 442 aa29.28■■■□□ 2.28
PTPRF-216ENST00000617451 GAS2L1Q99501 681 aaPredicted RBP29.28■■■□□ 2.28
PTPRF-216ENST00000617451 RNF41Q9H4P4 317 aaPredicted RBP29.28■■■□□ 2.28
PTPRF-216ENST00000617451 PRDM12Q9H4Q4 367 aa29.28■■■□□ 2.28
PTPRF-216ENST00000617451 MUC3AQ02505 3323 aa29.28■■■□□ 2.28
PTPRF-216ENST00000617451 RPUSD2Q8IZ73 545 aaKnown RBP29.27■■■□□ 2.28
PTPRF-216ENST00000617451 OR6J1Q8NGC5 347 aa29.27■■■□□ 2.28
PTPRF-216ENST00000617451 VWCEQ96DN2 955 aa29.27■■■□□ 2.28
PTPRF-216ENST00000617451 SDSP20132 328 aa29.26■■■□□ 2.27
PTPRF-216ENST00000617451 MFAP1P55081 439 aaKnown RBP29.26■■■□□ 2.27
PTPRF-216ENST00000617451 PDE4DQ08499 809 aa29.26■■■□□ 2.27
PTPRF-216ENST00000617451 GPATCH4Q5T3I0 446 aaKnown RBP29.26■■■□□ 2.27
PTPRF-216ENST00000617451 SMC5Q8IY18 1101 aa29.26■■■□□ 2.27
PTPRF-216ENST00000617451 DNERQ8NFT8 737 aa29.26■■■□□ 2.27
PTPRF-216ENST00000617451 ESR2Q92731 530 aa29.26■■■□□ 2.27
PTPRF-216ENST00000617451 SYMPKQ92797 1274 aaKnown RBP29.26■■■□□ 2.27
PTPRF-216ENST00000617451 MPHOSPH6Q99547 160 aaKnown RBP29.26■■■□□ 2.27
PTPRF-216ENST00000617451 TRMT13Q9NUP7 481 aaKnown RBP29.26■■■□□ 2.27
PTPRF-216ENST00000617451 NKRFO15226 690 aaKnown RBP eCLIP29.25■■■□□ 2.272e-6■■□□□ 12.9
PTPRF-216ENST00000617451 MYL3P08590 195 aa29.25■■■□□ 2.27
PTPRF-216ENST00000617451 SUPT20HL2P0C7V6 817 aa29.25■■■□□ 2.27
PTPRF-216ENST00000617451 DGKHQ86XP1 1220 aa29.25■■■□□ 2.27
PTPRF-216ENST00000617451 SCLYQ96I15 445 aa29.25■■■□□ 2.27
PTPRF-216ENST00000617451 MTG1Q9BT17 334 aaPredicted RBP29.25■■■□□ 2.27
PTPRF-216ENST00000617451 TNKSO95271 1327 aa29.24■■■□□ 2.27
PTPRF-216ENST00000617451 NEDD4P46934 1319 aa29.24■■■□□ 2.27
PTPRF-216ENST00000617451 AAMPQ13685 434 aa29.24■■■□□ 2.27
PTPRF-216ENST00000617451 PPP2R5BQ15173 497 aa29.24■■■□□ 2.27
PTPRF-216ENST00000617451 RGS22Q8NE09 1264 aa29.24■■■□□ 2.27
PTPRF-216ENST00000617451 SCFD2Q8WU76 684 aa29.24■■■□□ 2.27
PTPRF-216ENST00000617451 ZKSCAN3Q9BRR0 538 aa29.24■■■□□ 2.27
PTPRF-216ENST00000617451 NKX2-4Q9H2Z4 354 aa29.24■■■□□ 2.27
PTPRF-216ENST00000617451 GPHNQ9NQX3 736 aaPredicted RBP29.24■■■□□ 2.27
PTPRF-216ENST00000617451 YBX2Q9Y2T7 364 aaKnown RBP29.24■■■□□ 2.27
PTPRF-216ENST00000617451 ZNF213O14771 459 aa29.23■■■□□ 2.27
PTPRF-216ENST00000617451 GOLGA8HP0CJ92 632 aa29.23■■■□□ 2.27
PTPRF-216ENST00000617451 CYP2C9P11712 490 aa29.23■■■□□ 2.27
PTPRF-216ENST00000617451 BRDTQ58F21 947 aaPredicted RBP29.23■■■□□ 2.27
PTPRF-216ENST00000617451 RAD50Q92878 1312 aa29.22■■■□□ 2.27
PTPRF-216ENST00000617451 A6NJR5 290 aa29.22■■■□□ 2.27
PTPRF-216ENST00000617451 NT5C2P49902 561 aa29.22■■■□□ 2.27
PTPRF-216ENST00000617451 ADGRE1Q14246 886 aa29.22■■■□□ 2.27
PTPRF-216ENST00000617451 B4GALNT3Q6L9W6 998 aa29.22■■■□□ 2.27
PTPRF-216ENST00000617451 UBA5Q9GZZ9 404 aa29.22■■■□□ 2.27
PTPRF-216ENST00000617451 CPVLQ9H3G5 476 aa29.22■■■□□ 2.27
PTPRF-216ENST00000617451 OSBPL3Q9H4L5 887 aa29.22■■■□□ 2.27
PTPRF-216ENST00000617451 SLC28A3Q9HAS3 691 aa29.22■■■□□ 2.27
PTPRF-216ENST00000617451 SLC4A7Q9Y6M7 1214 aa29.22■■■□□ 2.27
PTPRF-216ENST00000617451 SCN10AQ9Y5Y9 1956 aa29.21■■■□□ 2.27
PTPRF-216ENST00000617451 B4DLN1 442 aa29.21■■■□□ 2.27
PTPRF-216ENST00000617451 KPNA6O60684 536 aa29.21■■■□□ 2.27
PTPRF-216ENST00000617451 MRPL12P52815 198 aaKnown RBP29.21■■■□□ 2.27
PTPRF-216ENST00000617451 NBPF20Q3BBV1 942 aa29.21■■■□□ 2.27
PTPRF-216ENST00000617451 USH1GQ495M9 461 aa29.21■■■□□ 2.27
PTPRF-216ENST00000617451 TJAP1Q5JTD0 557 aa29.21■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms