RNA–Protein interactions for RNA: ENST00000610828.4

NEK3-205, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK3, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-205ENST00000610828 VPS16Q9H269 839 aa15.3■□□□□ 0.04
NEK3-205ENST00000610828 LIMA1Q9UHB6 759 aaKnown RBP15.3■□□□□ 0.04
NEK3-205ENST00000610828 DDX25Q9UHL0 483 aaKnown RBP15.3■□□□□ 0.04
NEK3-205ENST00000610828 F5H6K3 240 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 CTIFO43310 598 aaKnown RBP15.29■□□□□ 0.04
NEK3-205ENST00000610828 ENTPD3O75355 529 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 PBX1P40424 430 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 AMPD3Q01432 767 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 KLRC3Q07444 240 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 PDE4DQ08499 809 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 RBL2Q08999 1139 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 PPP4R3AQ6IN85 833 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 POTEAQ6S8J7 498 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 SYT10Q6XYQ8 523 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 CCDC47Q96A33 483 aaKnown RBP15.29■□□□□ 0.04
NEK3-205ENST00000610828 EXOC1Q9NV70 894 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 USP17L15C9J2P7 530 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 USP17L13C9JLJ4 530 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 USP17L11C9JVI0 530 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 USP17L18D6R9N7 530 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 USP17L22D6RA61 530 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 USP17L17D6RBQ6 530 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 USP17L19D6RCP7 530 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 USP17L20D6RJB6 530 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 H7C1D1 291 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 PSMA7O14818 248 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 GH2P01242 217 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 PMS1P54277 932 aaKnown RBP15.29■□□□□ 0.04
NEK3-205ENST00000610828 USP17L24Q0WX57 530 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 IKQ13123 557 aaPredicted RBP15.29■□□□□ 0.04
NEK3-205ENST00000610828 USP17L6PQ6QN14 398 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 FCHSD1Q86WN1 690 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 TTLL6Q8N841 843 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 NUP88Q99567 741 aaPredicted RBP15.29■□□□□ 0.04
NEK3-205ENST00000610828 TAB2Q9NYJ8 693 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 RGS17Q9UGC6 210 aaPredicted RBP15.29■□□□□ 0.04
NEK3-205ENST00000610828 ATRNL1Q5VV63 1379 aa15.29■□□□□ 0.04
NEK3-205ENST00000610828 LRRC10BA6NIK2 292 aa15.28■□□□□ 0.04
NEK3-205ENST00000610828 TCP10L2B9ZVM9 353 aa15.28■□□□□ 0.04
NEK3-205ENST00000610828 ZSCAN12O43309 604 aa15.28■□□□□ 0.04
NEK3-205ENST00000610828 MARCH6O60337 910 aa15.28■□□□□ 0.04
NEK3-205ENST00000610828 RAD17O75943 681 aa15.28■□□□□ 0.04
NEK3-205ENST00000610828 COPB1P53618 953 aaKnown RBP15.28■□□□□ 0.04
NEK3-205ENST00000610828 SEMA3FQ13275 785 aa15.28■□□□□ 0.04
NEK3-205ENST00000610828 GRB10Q13322 594 aa15.28■□□□□ 0.04
NEK3-205ENST00000610828 RBM26Q5T8P6 1007 aaKnown RBP15.28■□□□□ 0.04
NEK3-205ENST00000610828 C7orf25Q9BPX7 421 aa15.28■□□□□ 0.04
NEK3-205ENST00000610828 TMOD2Q9NZR1 351 aa15.28■□□□□ 0.04
NEK3-205ENST00000610828 CLRN2A0PK11 232 aa15.28■□□□□ 0.04
NEK3-205ENST00000610828 JAG1P78504 1218 aa15.28■□□□□ 0.04
NEK3-205ENST00000610828 PDIA5Q14554 519 aa15.28■□□□□ 0.04
NEK3-205ENST00000610828 CCDC93Q567U6 631 aa15.28■□□□□ 0.04
NEK3-205ENST00000610828 SV2BQ7L1I2 683 aa15.28■□□□□ 0.04
NEK3-205ENST00000610828 ZNF710Q8N1W2 664 aa15.28■□□□□ 0.04
NEK3-205ENST00000610828 SNX29Q8TEQ0 813 aa15.28■□□□□ 0.04
NEK3-205ENST00000610828 TRIM47Q96LD4 638 aa15.28■□□□□ 0.04
NEK3-205ENST00000610828 PPP2R2CQ9Y2T4 447 aa15.28■□□□□ 0.04
NEK3-205ENST00000610828 MYH7BA7E2Y1 1941 aa15.28■□□□□ 0.04
NEK3-205ENST00000610828 NDUFB10O96000 172 aa15.27■□□□□ 0.04
NEK3-205ENST00000610828 SNAP25P60880 206 aa15.27■□□□□ 0.04
NEK3-205ENST00000610828 KRT79Q5XKE5 535 aa15.27■□□□□ 0.04
NEK3-205ENST00000610828 GJA10Q969M2 543 aa15.27■□□□□ 0.04
NEK3-205ENST00000610828 PANX2Q96RD6 677 aa15.27■□□□□ 0.04
NEK3-205ENST00000610828 FCER1AP12319 257 aa15.27■□□□□ 0.03
NEK3-205ENST00000610828 CASP14P31944 242 aa15.27■□□□□ 0.03
NEK3-205ENST00000610828 STK4Q13043 487 aa15.27■□□□□ 0.03
NEK3-205ENST00000610828 MCM6Q14566 821 aa15.27■□□□□ 0.03
NEK3-205ENST00000610828 RSBN1LQ6PCB5 846 aaPredicted RBP15.27■□□□□ 0.03
NEK3-205ENST00000610828 TOGARAM2Q6ZUX3 1019 aa15.27■□□□□ 0.03
NEK3-205ENST00000610828 REXO1L1PQ8IX06 675 aa15.27■□□□□ 0.03
NEK3-205ENST00000610828 RTKN2Q8IZC4 609 aa15.27■□□□□ 0.03
NEK3-205ENST00000610828 LARGE2Q8N3Y3 721 aa15.27■□□□□ 0.03
NEK3-205ENST00000610828 GMCL1P1Q8NEA9 526 aa15.27■□□□□ 0.03
NEK3-205ENST00000610828 LARP4BQ92615 738 aaKnown RBP15.27■□□□□ 0.03
NEK3-205ENST00000610828 PNMA5Q96PV4 448 aa15.27■□□□□ 0.03
NEK3-205ENST00000610828 SRRTQ9BXP5 876 aaKnown RBP15.27■□□□□ 0.03
NEK3-205ENST00000610828 GLT8D2Q9H1C3 349 aa15.27■□□□□ 0.03
NEK3-205ENST00000610828 ZNF277Q9NRM2 450 aaPredicted RBP15.27■□□□□ 0.03
NEK3-205ENST00000610828 BLOC1S4Q9NUP1 217 aa15.27■□□□□ 0.03
NEK3-205ENST00000610828 STK17AQ9UEE5 414 aa15.27■□□□□ 0.03
NEK3-205ENST00000610828 ATF5Q9Y2D1 282 aaPredicted RBP15.27■□□□□ 0.03
NEK3-205ENST00000610828 ITIH6Q6UXX5 1313 aa15.27■□□□□ 0.03
NEK3-205ENST00000610828 SPDYE2BA6NHP3 402 aa15.26■□□□□ 0.03
NEK3-205ENST00000610828 PSMD14O00487 310 aa15.26■□□□□ 0.03
NEK3-205ENST00000610828 SPDYE6P0CI01 402 aa15.26■□□□□ 0.03
NEK3-205ENST00000610828 RRP1BQ14684 758 aaKnown RBP15.26■□□□□ 0.03
NEK3-205ENST00000610828 IRF2BP1Q8IU81 584 aa15.26■□□□□ 0.03
NEK3-205ENST00000610828 HAS1Q92839 578 aa15.26■□□□□ 0.03
NEK3-205ENST00000610828 NUDT12Q9BQG2 462 aa15.26■□□□□ 0.03
NEK3-205ENST00000610828 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.26■□□□□ 0.03
NEK3-205ENST00000610828 MFAP3LO75121 409 aa15.26■□□□□ 0.03
NEK3-205ENST00000610828 TUBB4AP04350 444 aa15.26■□□□□ 0.03
NEK3-205ENST00000610828 GYPCP04921 128 aa15.26■□□□□ 0.03
NEK3-205ENST00000610828 TPM1P09493 284 aa15.26■□□□□ 0.03
NEK3-205ENST00000610828 GCFC2P16383 781 aaKnown RBP15.26■□□□□ 0.03
NEK3-205ENST00000610828 ETF1P62495 437 aaKnown RBP15.26■□□□□ 0.03
NEK3-205ENST00000610828 UBXN1Q04323 297 aa15.26■□□□□ 0.03
NEK3-205ENST00000610828 USH1GQ495M9 461 aa15.26■□□□□ 0.03
NEK3-205ENST00000610828 OGFOD1Q8N543 542 aa15.26■□□□□ 0.03
NEK3-205ENST00000610828 DHTKD1Q96HY7 919 aaPredicted RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms