RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 HIPK3Q9H422 1215 aa20.97■□□□□ 0.95
SHKBP1-227ENST00000602011 INCENPQ9NQS7 918 aa20.97■□□□□ 0.95
SHKBP1-227ENST00000602011 MSRAQ9UJ68 235 aa20.97■□□□□ 0.95
SHKBP1-227ENST00000602011 ASTN1O14525 1302 aa20.97■□□□□ 0.95
SHKBP1-227ENST00000602011 RBM47A0AV96 593 aaKnown RBP20.96■□□□□ 0.95
SHKBP1-227ENST00000602011 NKRFO15226 690 aaKnown RBP eCLIP20.96■□□□□ 0.95
SHKBP1-227ENST00000602011 KPNA6O60684 536 aa20.96■□□□□ 0.95
SHKBP1-227ENST00000602011 CPT1AP50416 773 aa20.96■□□□□ 0.95
SHKBP1-227ENST00000602011 BAATQ14032 418 aaPredicted RBP20.96■□□□□ 0.95
SHKBP1-227ENST00000602011 RGS22Q8NE09 1264 aa20.96■□□□□ 0.95
SHKBP1-227ENST00000602011 CHD9Q3L8U1 2897 aa20.96■□□□□ 0.95
SHKBP1-227ENST00000602011 TJAP1Q5JTD0 557 aa20.95■□□□□ 0.94
SHKBP1-227ENST00000602011 RRP12Q5JTH9 1297 aaKnown RBP20.95■□□□□ 0.94
SHKBP1-227ENST00000602011 AKNAD1Q5T1N1 836 aa20.95■□□□□ 0.94
SHKBP1-227ENST00000602011 GPATCH4Q5T3I0 446 aaKnown RBP20.95■□□□□ 0.94
SHKBP1-227ENST00000602011 DNERQ8NFT8 737 aa20.95■□□□□ 0.94
SHKBP1-227ENST00000602011 GAS2L1Q99501 681 aaPredicted RBP20.95■□□□□ 0.94
SHKBP1-227ENST00000602011 PDGFCQ9NRA1 345 aa20.95■□□□□ 0.94
SHKBP1-227ENST00000602011 UMODL1Q5DID0 1318 aa20.95■□□□□ 0.94
SHKBP1-227ENST00000602011 WDR19Q8NEZ3 1342 aa20.95■□□□□ 0.94
SHKBP1-227ENST00000602011 MUC3AQ02505 3323 aa20.94■□□□□ 0.94
SHKBP1-227ENST00000602011 PFKMP08237 780 aa20.94■□□□□ 0.94
SHKBP1-227ENST00000602011 PDHBP11177 359 aa20.94■□□□□ 0.94
SHKBP1-227ENST00000602011 ALDH5A1P51649 535 aaPredicted RBP20.94■□□□□ 0.94
SHKBP1-227ENST00000602011 SNAP25P60880 206 aa20.94■□□□□ 0.94
SHKBP1-227ENST00000602011 EEPD1Q7L9B9 569 aa20.94■□□□□ 0.94
SHKBP1-227ENST00000602011 DGKHQ86XP1 1220 aa20.94■□□□□ 0.94
SHKBP1-227ENST00000602011 FBXO16Q8IX29 292 aaPredicted RBP20.94■□□□□ 0.94
SHKBP1-227ENST00000602011 ESR2Q92731 530 aa20.94■□□□□ 0.94
SHKBP1-227ENST00000602011 WDR11Q9BZH6 1224 aa20.94■□□□□ 0.94
SHKBP1-227ENST00000602011 GPHNQ9NQX3 736 aaPredicted RBP20.94■□□□□ 0.94
SHKBP1-227ENST00000602011 CXXC1Q9P0U4 656 aaPredicted RBP20.94■□□□□ 0.94
SHKBP1-227ENST00000602011 MTMR7Q9Y216 660 aa20.94■□□□□ 0.94
SHKBP1-227ENST00000602011 RAD50Q92878 1312 aa20.94■□□□□ 0.94
SHKBP1-227ENST00000602011 PTPDC1A2A3K4 754 aa20.93■□□□□ 0.94
SHKBP1-227ENST00000602011 SNHG28P0DPA3 235 aa20.93■□□□□ 0.94
SHKBP1-227ENST00000602011 SLC16A2P36021 539 aa20.93■□□□□ 0.94
SHKBP1-227ENST00000602011 ZNF543Q08ER8 600 aa20.93■□□□□ 0.94
SHKBP1-227ENST00000602011 ADGRE1Q14246 886 aa20.93■□□□□ 0.94
SHKBP1-227ENST00000602011 CCDC85BQ15834 202 aaPredicted RBP20.93■□□□□ 0.94
SHKBP1-227ENST00000602011 TMEM63BQ5T3F8 832 aa20.93■□□□□ 0.94
SHKBP1-227ENST00000602011 TTBK2Q6IQ55 1244 aa20.93■□□□□ 0.94
SHKBP1-227ENST00000602011 RNF207Q6ZRF8 634 aa20.93■□□□□ 0.94
SHKBP1-227ENST00000602011 FAM227BQ96M60 508 aa20.93■□□□□ 0.94
SHKBP1-227ENST00000602011 RWDD1Q9H446 243 aaPredicted RBP20.93■□□□□ 0.94
SHKBP1-227ENST00000602011 GRIN2DO15399 1336 aa20.93■□□□□ 0.94
SHKBP1-227ENST00000602011 A0A0D9SFI3 127 aa20.92■□□□□ 0.94
SHKBP1-227ENST00000602011 TRIM6-TRIM34B2RNG4 842 aa20.92■□□□□ 0.94
SHKBP1-227ENST00000602011 RASGRP2Q7LDG7 609 aa20.92■□□□□ 0.94
SHKBP1-227ENST00000602011 SCFD2Q8WU76 684 aa20.92■□□□□ 0.94
SHKBP1-227ENST00000602011 NOC4LQ9BVI4 516 aaKnown RBP20.92■□□□□ 0.94
SHKBP1-227ENST00000602011 NKX2-4Q9H2Z4 354 aa20.92■□□□□ 0.94
SHKBP1-227ENST00000602011 GPCPD1Q9NPB8 672 aa20.92■□□□□ 0.94
SHKBP1-227ENST00000602011 CCDC171Q6TFL3 1326 aa20.92■□□□□ 0.94
SHKBP1-227ENST00000602011 HIP1O00291 1037 aa20.91■□□□□ 0.94
SHKBP1-227ENST00000602011 ZNF213O14771 459 aa20.91■□□□□ 0.94
SHKBP1-227ENST00000602011 PTPN11Q06124 597 aaPredicted RBP20.91■□□□□ 0.94
SHKBP1-227ENST00000602011 PDE4DQ08499 809 aa20.91■□□□□ 0.94
SHKBP1-227ENST00000602011 IQCA1Q86XH1 822 aa20.91■□□□□ 0.94
SHKBP1-227ENST00000602011 CLEC4DQ8WXI8 215 aa20.91■□□□□ 0.94
SHKBP1-227ENST00000602011 CRBNQ96SW2 442 aa20.91■□□□□ 0.94
SHKBP1-227ENST00000602011 MTG1Q9BT17 334 aaPredicted RBP20.91■□□□□ 0.94
SHKBP1-227ENST00000602011 ALDH8A1Q9H2A2 487 aaPredicted RBP20.91■□□□□ 0.94
SHKBP1-227ENST00000602011 OSBPL3Q9H4L5 887 aa20.91■□□□□ 0.94
SHKBP1-227ENST00000602011 RAPGEFL1Q9UHV5 662 aa20.91■□□□□ 0.94
SHKBP1-227ENST00000602011 YBX2Q9Y2T7 364 aaKnown RBP20.91■□□□□ 0.94
SHKBP1-227ENST00000602011 NFIBO00712 420 aa20.9■□□□□ 0.94
SHKBP1-227ENST00000602011 B4GALT4O60513 344 aa20.9■□□□□ 0.94
SHKBP1-227ENST00000602011 EDNRBP24530 442 aa20.9■□□□□ 0.94
SHKBP1-227ENST00000602011 CCL23P55773 120 aa20.9■□□□□ 0.94
SHKBP1-227ENST00000602011 NMIQ13287 307 aaPredicted RBP20.9■□□□□ 0.94
SHKBP1-227ENST00000602011 PURBQ96QR8 312 aaKnown RBP20.9■□□□□ 0.94
SHKBP1-227ENST00000602011 TRPV6Q9H1D0 765 aa20.9■□□□□ 0.94
SHKBP1-227ENST00000602011 SLC28A3Q9HAS3 691 aa20.9■□□□□ 0.94
SHKBP1-227ENST00000602011 FRMPD2Q68DX3 1309 aaPredicted RBP20.89■□□□□ 0.93
SHKBP1-227ENST00000602011 TNFRSF10AO00220 468 aa20.89■□□□□ 0.93
SHKBP1-227ENST00000602011 IGFBP4P22692 258 aa20.89■□□□□ 0.93
SHKBP1-227ENST00000602011 CALML3P27482 149 aa20.89■□□□□ 0.93
SHKBP1-227ENST00000602011 RFC2P35250 354 aa20.89■□□□□ 0.93
SHKBP1-227ENST00000602011 PSMC6P62333 389 aa20.89■□□□□ 0.93
SHKBP1-227ENST00000602011 RPS6P62753 249 aaKnown RBP20.89■□□□□ 0.93
SHKBP1-227ENST00000602011 PURAQ00577 322 aaKnown RBP20.89■□□□□ 0.93
SHKBP1-227ENST00000602011 PPP2R5BQ15173 497 aa20.89■□□□□ 0.93
SHKBP1-227ENST00000602011 NFRKBQ6P4R8 1299 aa20.89■□□□□ 0.93
SHKBP1-227ENST00000602011 OTOP2Q7RTS6 562 aa20.89■□□□□ 0.93
SHKBP1-227ENST00000602011 SMC5Q8IY18 1101 aa20.89■□□□□ 0.93
SHKBP1-227ENST00000602011 ANKS1AQ92625 1134 aa20.89■□□□□ 0.93
SHKBP1-227ENST00000602011 RILPL2Q969X0 211 aa20.89■□□□□ 0.93
SHKBP1-227ENST00000602011 SLC4A7Q9Y6M7 1214 aa20.89■□□□□ 0.93
SHKBP1-227ENST00000602011 GBF1Q92538 1859 aa20.89■□□□□ 0.93
SHKBP1-227ENST00000602011 CHD7Q9P2D1 2997 aa20.89■□□□□ 0.93
SHKBP1-227ENST00000602011 LRRC37A2A6NM11 1700 aa20.88■□□□□ 0.93
SHKBP1-227ENST00000602011 A6NJR5 290 aa20.88■□□□□ 0.93
SHKBP1-227ENST00000602011 SDSP20132 328 aa20.88■□□□□ 0.93
SHKBP1-227ENST00000602011 RABGGTBP53611 331 aa20.88■□□□□ 0.93
SHKBP1-227ENST00000602011 ZNF589Q86UQ0 364 aaPredicted RBP20.88■□□□□ 0.93
SHKBP1-227ENST00000602011 MCF2L2Q86YR7 1114 aa20.88■□□□□ 0.93
SHKBP1-227ENST00000602011 OR6J1Q8NGC5 347 aa20.88■□□□□ 0.93
SHKBP1-227ENST00000602011 TNKSO95271 1327 aa20.87■□□□□ 0.93
SHKBP1-227ENST00000602011 ACTN1P12814 892 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms