RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 NECAB2Q7Z6G3 386 aa19.53■□□□□ 0.72
TRIM28-215ENST00000601150 SRBD1Q8N5C6 995 aaKnown RBP19.53■□□□□ 0.72
TRIM28-215ENST00000601150 RRP36Q96EU6 259 aaKnown RBP19.53■□□□□ 0.72
TRIM28-215ENST00000601150 PAWRQ96IZ0 340 aaKnown RBP19.53■□□□□ 0.72
TRIM28-215ENST00000601150 RBM28Q9NW13 759 aaKnown RBP19.53■□□□□ 0.72
TRIM28-215ENST00000601150 FAM184BQ9ULE4 1060 aa19.53■□□□□ 0.72
TRIM28-215ENST00000601150 PDE4DIPQ5VU43 2346 aa19.52■□□□□ 0.72
TRIM28-215ENST00000601150 RARBP10826 455 aa19.52■□□□□ 0.72
TRIM28-215ENST00000601150 MNX1P50219 401 aaPredicted RBP19.52■□□□□ 0.72
TRIM28-215ENST00000601150 RCAN1P53805 252 aa19.52■□□□□ 0.72
TRIM28-215ENST00000601150 RTN1Q16799 776 aa19.52■□□□□ 0.72
TRIM28-215ENST00000601150 TMTC3Q6ZXV5 915 aa19.52■□□□□ 0.72
TRIM28-215ENST00000601150 RUFY3Q7L099 469 aa19.52■□□□□ 0.72
TRIM28-215ENST00000601150 FBXL16Q8N461 479 aa19.52■□□□□ 0.72
TRIM28-215ENST00000601150 DNERQ8NFT8 737 aa19.52■□□□□ 0.72
TRIM28-215ENST00000601150 MORC4Q8TE76 937 aa19.52■□□□□ 0.72
TRIM28-215ENST00000601150 DIS3LQ8TF46 1054 aaKnown RBP19.52■□□□□ 0.72
TRIM28-215ENST00000601150 PIBF1Q8WXW3 757 aa19.52■□□□□ 0.72
TRIM28-215ENST00000601150 TM6SF1Q9BZW5 370 aa19.52■□□□□ 0.72
TRIM28-215ENST00000601150 ZSWIM6Q9HCJ5 1215 aa19.52■□□□□ 0.72
TRIM28-215ENST00000601150 CMTR1Q8N1G2 835 aaKnown RBP19.51■□□□□ 0.71
TRIM28-215ENST00000601150 ARRDC4Q8NCT1 418 aa19.51■□□□□ 0.71
TRIM28-215ENST00000601150 TBC1D5Q92609 795 aa19.51■□□□□ 0.71
TRIM28-215ENST00000601150 BRF1Q92994 677 aa19.51■□□□□ 0.71
TRIM28-215ENST00000601150 MPHOSPH6Q99547 160 aaKnown RBP19.51■□□□□ 0.71
TRIM28-215ENST00000601150 HTATIP2Q9BUP3 242 aa19.51■□□□□ 0.71
TRIM28-215ENST00000601150 AGXT2Q9BYV1 514 aa19.51■□□□□ 0.71
TRIM28-215ENST00000601150 KATNBL1Q9H079 304 aa19.51■□□□□ 0.71
TRIM28-215ENST00000601150 SEC63Q9UGP8 760 aaKnown RBP19.51■□□□□ 0.71
TRIM28-215ENST00000601150 NAP1L2Q9ULW6 460 aaPredicted RBP19.51■□□□□ 0.71
TRIM28-215ENST00000601150 CYP46A1Q9Y6A2 500 aa19.51■□□□□ 0.71
TRIM28-215ENST00000601150 GOLGA8AA7E2F4 631 aa19.5■□□□□ 0.71
TRIM28-215ENST00000601150 GOLGA8BA8MQT2 603 aa19.5■□□□□ 0.71
TRIM28-215ENST00000601150 OPLAHO14841 1288 aa19.5■□□□□ 0.71
TRIM28-215ENST00000601150 CFBP00751 764 aa19.5■□□□□ 0.71
TRIM28-215ENST00000601150 APOBRQ0VD83 1088 aa19.5■□□□□ 0.71
TRIM28-215ENST00000601150 CCDC144BQ3MJ40 725 aa19.5■□□□□ 0.71
TRIM28-215ENST00000601150 SAMD3Q8N6K7 520 aa19.5■□□□□ 0.71
TRIM28-215ENST00000601150 SYTL5Q8TDW5 730 aaPredicted RBP19.5■□□□□ 0.71
TRIM28-215ENST00000601150 C11orf49Q9H6J7 331 aa19.5■□□□□ 0.71
TRIM28-215ENST00000601150 XPNPEP3Q9NQH7 507 aa19.5■□□□□ 0.71
TRIM28-215ENST00000601150 MAP3K20Q9NYL2 800 aaKnown RBP19.5■□□□□ 0.71
TRIM28-215ENST00000601150 DDX49Q9Y6V7 483 aaKnown RBP19.5■□□□□ 0.71
TRIM28-215ENST00000601150 ALPK3Q96L96 1907 aa19.5■□□□□ 0.71
TRIM28-215ENST00000601150 B4DLN1 442 aa19.49■□□□□ 0.71
TRIM28-215ENST00000601150 DNM1LO00429 736 aa19.49■□□□□ 0.71
TRIM28-215ENST00000601150 HSD17B4P51659 736 aa19.49■□□□□ 0.71
TRIM28-215ENST00000601150 MRPL12P52815 198 aaKnown RBP19.49■□□□□ 0.71
TRIM28-215ENST00000601150 GHRHRQ02643 423 aa19.49■□□□□ 0.71
TRIM28-215ENST00000601150 PPP2R5BQ15173 497 aa19.49■□□□□ 0.71
TRIM28-215ENST00000601150 VTA1Q9NP79 307 aa19.49■□□□□ 0.71
TRIM28-215ENST00000601150 ANAPC15P60006 121 aa19.48■□□□□ 0.71
TRIM28-215ENST00000601150 PDE4DQ08499 809 aa19.48■□□□□ 0.71
TRIM28-215ENST00000601150 GJC2Q5T442 439 aaPredicted RBP19.48■□□□□ 0.71
TRIM28-215ENST00000601150 CCDC82Q8N4S0 544 aa19.48■□□□□ 0.71
TRIM28-215ENST00000601150 TAAR1Q96RJ0 339 aa19.48■□□□□ 0.71
TRIM28-215ENST00000601150 COL20A1Q9P218 1284 aa19.48■□□□□ 0.71
TRIM28-215ENST00000601150 KIAA1217Q5T5P2 1943 aa19.48■□□□□ 0.71
TRIM28-215ENST00000601150 CCDC196A0A1B0GTZ2 297 aa19.47■□□□□ 0.71
TRIM28-215ENST00000601150 KBTBD13C9JR72 458 aa19.47■□□□□ 0.71
TRIM28-215ENST00000601150 GCOM1H8Y6P7 765 aaPredicted RBP19.47■□□□□ 0.71
TRIM28-215ENST00000601150 DUSP11O75319 330 aaKnown RBP19.47■□□□□ 0.71
TRIM28-215ENST00000601150 MYCNP04198 464 aaPredicted RBP19.47■□□□□ 0.71
TRIM28-215ENST00000601150 POLR2MP0CAP2 368 aa19.47■□□□□ 0.71
TRIM28-215ENST00000601150 COL6A1P12109 1028 aa19.47■□□□□ 0.71
TRIM28-215ENST00000601150 EDNRBP24530 442 aa19.47■□□□□ 0.71
TRIM28-215ENST00000601150 METAP2P50579 478 aaKnown RBP eCLIP19.47■□□□□ 0.711e-7■□□□□ 9.9
TRIM28-215ENST00000601150 LRRC41Q15345 812 aa19.47■□□□□ 0.71
TRIM28-215ENST00000601150 EEPD1Q7L9B9 569 aa19.47■□□□□ 0.71
TRIM28-215ENST00000601150 FBXO16Q8IX29 292 aaPredicted RBP19.47■□□□□ 0.71
TRIM28-215ENST00000601150 NSUN6Q8TEA1 469 aaKnown RBP19.47■□□□□ 0.71
TRIM28-215ENST00000601150 LENG1Q96BZ8 264 aaPredicted RBP19.47■□□□□ 0.71
TRIM28-215ENST00000601150 RMDN3Q96TC7 470 aa19.47■□□□□ 0.71
TRIM28-215ENST00000601150 UPF3BQ9BZI7 483 aaKnown RBP19.47■□□□□ 0.71
TRIM28-215ENST00000601150 CNTNAP5Q8WYK1 1306 aa19.47■□□□□ 0.71
TRIM28-215ENST00000601150 NID2Q14112 1375 aa19.46■□□□□ 0.71
TRIM28-215ENST00000601150 SEC24BO95487 1268 aa19.46■□□□□ 0.71
TRIM28-215ENST00000601150 PGK1P00558 417 aa19.46■□□□□ 0.71
TRIM28-215ENST00000601150 CDC27P30260 824 aa19.46■□□□□ 0.71
TRIM28-215ENST00000601150 ADCYAP1R1P41586 468 aa19.46■□□□□ 0.71
TRIM28-215ENST00000601150 EVCP57679 992 aa19.46■□□□□ 0.71
TRIM28-215ENST00000601150 TNFAIP2Q03169 654 aa19.46■□□□□ 0.71
TRIM28-215ENST00000601150 IQSEC1Q6DN90 963 aa19.46■□□□□ 0.71
TRIM28-215ENST00000601150 TAPT1Q6NXT6 567 aa19.46■□□□□ 0.71
TRIM28-215ENST00000601150 RNF180Q86T96 592 aa19.46■□□□□ 0.71
TRIM28-215ENST00000601150 DPF3Q92784 378 aa19.46■□□□□ 0.71
TRIM28-215ENST00000601150 IWS1Q96ST2 819 aa19.46■□□□□ 0.71
TRIM28-215ENST00000601150 FAM217BQ9NTX9 383 aaPredicted RBP19.46■□□□□ 0.71
TRIM28-215ENST00000601150 PDRG1Q9NUG6 133 aa19.46■□□□□ 0.71
TRIM28-215ENST00000601150 SYNRGQ9UMZ2 1314 aa19.46■□□□□ 0.71
TRIM28-215ENST00000601150 hCG_1642624A0A1W2PR95 340 aa19.45■□□□□ 0.7
TRIM28-215ENST00000601150 ADCY6O43306 1168 aa19.45■□□□□ 0.7
TRIM28-215ENST00000601150 HOXA13P31271 388 aaPredicted RBP19.45■□□□□ 0.7
TRIM28-215ENST00000601150 FUT2Q10981 343 aa19.45■□□□□ 0.7
TRIM28-215ENST00000601150 TOB2Q14106 344 aaPredicted RBP19.45■□□□□ 0.7
TRIM28-215ENST00000601150 ARHGEF16Q5VV41 709 aa19.45■□□□□ 0.7
TRIM28-215ENST00000601150 PDGFCQ9NRA1 345 aa19.45■□□□□ 0.7
TRIM28-215ENST00000601150 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.44■□□□□ 0.7
TRIM28-215ENST00000601150 ADAMTS4O75173 837 aa19.44■□□□□ 0.7
TRIM28-215ENST00000601150 ADD1P35611 737 aaKnown RBP19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms