RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 EHBP1Q8NDI1 1231 aa20.41■□□□□ 0.86
UPF1-210ENST00000600689 ZNF507Q8TCN5 953 aa20.41■□□□□ 0.86
UPF1-210ENST00000600689 AENQ8WTP8 325 aaKnown RBP20.41■□□□□ 0.86
UPF1-210ENST00000600689 NGLY1Q96IV0 654 aa20.41■□□□□ 0.86
UPF1-210ENST00000600689 CCDC43Q96MW1 224 aaKnown RBP20.41■□□□□ 0.86
UPF1-210ENST00000600689 SRP68Q9UHB9 627 aaKnown RBP20.41■□□□□ 0.86
UPF1-210ENST00000600689 NFU1Q9UMS0 254 aa20.41■□□□□ 0.86
UPF1-210ENST00000600689 ZNF652Q9Y2D9 606 aa20.41■□□□□ 0.86
UPF1-210ENST00000600689 RTL9Q8NET4 1388 aa20.41■□□□□ 0.86
UPF1-210ENST00000600689 TARSL2A2RTX5 802 aaKnown RBP20.4■□□□□ 0.86
UPF1-210ENST00000600689 BACH1O14867 736 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 TACC1O75410 805 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 INF2Q27J81 1249 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 ANKRD40Q6AI12 368 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 CELF1Q92879 486 aaKnown RBP20.4■□□□□ 0.86
UPF1-210ENST00000600689 SNX12Q9UMY4 172 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 GRIN2DO15399 1336 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 ATP2C2O75185 946 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 BMP15O95972 392 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 FAM153BP0C7A2 387 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 DNM2P50570 870 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 ASIC1P78348 528 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 TROAPQ12815 778 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 FAM153CQ494X1 144 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 OTUD6BQ8N6M0 293 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 FAM153AQ9UHL3 310 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 PACSIN2Q9UNF0 486 aaPredicted RBP20.4■□□□□ 0.86
UPF1-210ENST00000600689 RREB1Q92766 1687 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 KIAA0754O94854 1291 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 EIF4A3P38919 411 aaKnown RBP20.4■□□□□ 0.86
UPF1-210ENST00000600689 ARID5AQ03989 594 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 TRADDQ15628 312 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 C8orf74Q6P047 294 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 KCNV1Q6PIU1 500 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 ZIM3Q96PE6 472 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 CPVLQ9H3G5 476 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 DISC1Q9NRI5 854 aa20.4■□□□□ 0.86
UPF1-210ENST00000600689 RBM12Q9NTZ6 932 aaKnown RBP20.4■□□□□ 0.86
UPF1-210ENST00000600689 DOCK2Q92608 1830 aa20.39■□□□□ 0.86
UPF1-210ENST00000600689 SSBP05455 408 aaKnown RBP eCLIP20.39■□□□□ 0.85
UPF1-210ENST00000600689 CYP2D6P10635 497 aa20.39■□□□□ 0.85
UPF1-210ENST00000600689 STK4Q13043 487 aa20.39■□□□□ 0.85
UPF1-210ENST00000600689 NNTQ13423 1086 aa20.39■□□□□ 0.85
UPF1-210ENST00000600689 NAALADL2Q58DX5 795 aa20.39■□□□□ 0.85
UPF1-210ENST00000600689 TMTC3Q6ZXV5 915 aa20.39■□□□□ 0.85
UPF1-210ENST00000600689 CCDC155Q8N6L0 562 aa20.39■□□□□ 0.85
UPF1-210ENST00000600689 TNFRSF25Q93038 417 aa20.39■□□□□ 0.85
UPF1-210ENST00000600689 MYCBPQ99417 103 aaPredicted RBP20.39■□□□□ 0.85
UPF1-210ENST00000600689 JPH2Q9BR39 696 aaPredicted RBP20.39■□□□□ 0.85
UPF1-210ENST00000600689 SCG2P13521 617 aa20.39■□□□□ 0.85
UPF1-210ENST00000600689 KLRK1P26718 216 aa20.39■□□□□ 0.85
UPF1-210ENST00000600689 CARSP49589 748 aaKnown RBP20.39■□□□□ 0.85
UPF1-210ENST00000600689 RASSF7Q02833 373 aa20.39■□□□□ 0.85
UPF1-210ENST00000600689 IQCEQ6IPM2 695 aa20.39■□□□□ 0.85
UPF1-210ENST00000600689 DTHD1Q6ZMT9 781 aa20.39■□□□□ 0.85
UPF1-210ENST00000600689 AMIGO3Q86WK7 504 aa20.39■□□□□ 0.85
UPF1-210ENST00000600689 LRRC15Q8TF66 581 aa20.39■□□□□ 0.85
UPF1-210ENST00000600689 OSBPL9Q96SU4 736 aa20.39■□□□□ 0.85
UPF1-210ENST00000600689 SLC39A2Q9NP94 309 aa20.39■□□□□ 0.85
UPF1-210ENST00000600689 USO1O60763 962 aaKnown RBP20.38■□□□□ 0.85
UPF1-210ENST00000600689 VAV2P52735 878 aa20.38■□□□□ 0.85
UPF1-210ENST00000600689 TDRD12Q587J7 1177 aaKnown RBP20.38■□□□□ 0.85
UPF1-210ENST00000600689 RRAGAQ7L523 313 aa20.38■□□□□ 0.85
UPF1-210ENST00000600689 NCAPGQ9BPX3 1015 aa20.38■□□□□ 0.85
UPF1-210ENST00000600689 PCDHA13Q9Y5I0 950 aa20.38■□□□□ 0.85
UPF1-210ENST00000600689 BCL9LQ86UU0 1499 aa20.38■□□□□ 0.85
UPF1-210ENST00000600689 PDS5AQ29RF7 1337 aaKnown RBP20.38■□□□□ 0.85
UPF1-210ENST00000600689 GNAT2P19087 354 aa20.38■□□□□ 0.85
UPF1-210ENST00000600689 GUCY2DQ02846 1103 aa20.38■□□□□ 0.85
UPF1-210ENST00000600689 DUSP9Q99956 384 aaKnown RBP20.38■□□□□ 0.85
UPF1-210ENST00000600689 TANGO6Q9C0B7 1094 aa20.38■□□□□ 0.85
UPF1-210ENST00000600689 SALL4Q9UJQ4 1053 aa20.38■□□□□ 0.85
UPF1-210ENST00000600689 CCDC194A0A1B0GVG4 234 aa20.38■□□□□ 0.85
UPF1-210ENST00000600689 SRGNP10124 158 aa20.38■□□□□ 0.85
UPF1-210ENST00000600689 RPGRIP1Q96KN7 1286 aa20.38■□□□□ 0.85
UPF1-210ENST00000600689 UIMC1Q96RL1 719 aa20.38■□□□□ 0.85
UPF1-210ENST00000600689 NLRC4Q9NPP4 1024 aa20.38■□□□□ 0.85
UPF1-210ENST00000600689 SHOX2O60902 331 aaPredicted RBP20.37■□□□□ 0.85
UPF1-210ENST00000600689 PAFAH1B1P43034 410 aa20.37■□□□□ 0.85
UPF1-210ENST00000600689 ZBED6P86452 979 aa20.37■□□□□ 0.85
UPF1-210ENST00000600689 GFPT1Q06210 699 aaPredicted RBP20.37■□□□□ 0.85
UPF1-210ENST00000600689 SLC51AQ86UW1 340 aa20.37■□□□□ 0.85
UPF1-210ENST00000600689 RNPC3Q96LT9 517 aaKnown RBP20.37■□□□□ 0.85
UPF1-210ENST00000600689 EPB41L5Q9HCM4 733 aa20.37■□□□□ 0.85
UPF1-210ENST00000600689 COL1A1P02452 1464 aaPredicted RBP20.37■□□□□ 0.85
UPF1-210ENST00000600689 CNTNAP5Q8WYK1 1306 aa20.37■□□□□ 0.85
UPF1-210ENST00000600689 COL5A3P25940 1745 aaPredicted RBP20.37■□□□□ 0.85
UPF1-210ENST00000600689 OPA1O60313 960 aa20.37■□□□□ 0.85
UPF1-210ENST00000600689 EEF1GP26641 437 aaKnown RBP20.37■□□□□ 0.85
UPF1-210ENST00000600689 KIF11P52732 1056 aa20.37■□□□□ 0.85
UPF1-210ENST00000600689 TTI2Q6NXR4 508 aa20.37■□□□□ 0.85
UPF1-210ENST00000600689 CLEC4GQ6UXB4 293 aa20.37■□□□□ 0.85
UPF1-210ENST00000600689 MAATS1Q7Z4T9 603 aa20.37■□□□□ 0.85
UPF1-210ENST00000600689 AMOTL1Q8IY63 956 aa20.37■□□□□ 0.85
UPF1-210ENST00000600689 KANSL2Q9H9L4 492 aa20.37■□□□□ 0.85
UPF1-210ENST00000600689 ARHGAP20Q9P2F6 1191 aa20.37■□□□□ 0.85
UPF1-210ENST00000600689 MINPP1Q9UNW1 487 aa20.37■□□□□ 0.85
UPF1-210ENST00000600689 FTCDO95954 541 aa20.36■□□□□ 0.85
UPF1-210ENST00000600689 CD248Q9HCU0 757 aa20.36■□□□□ 0.85
UPF1-210ENST00000600689 PPANQ9NQ55 473 aaKnown RBP20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms