RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 TFF2Q03403 129 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 PDE4BQ07343 736 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 BAATQ14032 418 aaPredicted RBP7.26□□□□□ -1.25
VRK3-220ENST00000600259 GPNMBQ14956 572 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 TTBK2Q6IQ55 1244 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 KIAA1211Q6ZU35 1233 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 NOL8Q76FK4 1167 aaKnown RBP7.26□□□□□ -1.25
VRK3-220ENST00000600259 FBXO16Q8IX29 292 aaPredicted RBP7.26□□□□□ -1.25
VRK3-220ENST00000600259 CLEC4DQ8WXI8 215 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 CHMP4CQ96CF2 233 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 CTAGE1Q96RT6 745 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 MTIF3Q9H2K0 278 aaKnown RBP7.26□□□□□ -1.25
VRK3-220ENST00000600259 RANBP17Q9H2T7 1088 aaKnown RBP7.26□□□□□ -1.25
VRK3-220ENST00000600259 CHMP4BQ9H444 224 aaKnown RBP7.26□□□□□ -1.25
VRK3-220ENST00000600259 VTA1Q9NP79 307 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 TRMT13Q9NUP7 481 aaKnown RBP7.26□□□□□ -1.25
VRK3-220ENST00000600259 ANAPC4Q9UJX5 808 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 SLC4A7Q9Y6M7 1214 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 MYH8P13535 1937 aa7.26□□□□□ -1.25
VRK3-220ENST00000600259 LOC102724159A0A0B4J2E5 919 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 A6NJR5 290 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 NFIBO00712 420 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 ERC2O15083 957 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 TLL1O43897 1013 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 ZEB2O60315 1214 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 LPXNO60711 386 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 ICAM1P05362 532 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 ATP2A2P16615 1042 aaKnown RBP7.25□□□□□ -1.25
VRK3-220ENST00000600259 EDNRBP24530 442 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 ALDH5A1P51649 535 aaPredicted RBP7.25□□□□□ -1.25
VRK3-220ENST00000600259 KCNQ1P51787 676 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 TAP1Q03518 808 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 CTDSPL2Q05D32 466 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 PWP2Q15269 919 aaKnown RBP7.25□□□□□ -1.25
VRK3-220ENST00000600259 ALX1Q15699 326 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 NBPF20Q3BBV1 942 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 KRT40Q6A162 431 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 PHOSPHO2Q8TCD6 241 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 OTUD7AQ8TE49 926 aaPredicted RBP7.25□□□□□ -1.25
VRK3-220ENST00000600259 WDR11Q9BZH6 1224 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 RCAN3Q9UKA8 241 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 TNKSO95271 1327 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 SALL3Q9BXA9 1300 aa7.25□□□□□ -1.25
VRK3-220ENST00000600259 RBAK-RBAKDNI3L0D1 243 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 ORC4O43929 436 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 CA3P07451 260 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 PFKMP08237 780 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 IQCF3P0C7M6 154 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 SUPT20HL2P0C7V6 817 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 SLC16A2P36021 539 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 PLA2G5P39877 138 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 TMEM67Q5HYA8 995 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 VPS53Q5VIR6 699 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 PPP2R2DQ66LE6 453 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 CCDC62Q6P9F0 684 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 NSMFQ6X4W1 530 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 SPRED2Q7Z698 418 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 DEFB128Q7Z7B8 93 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 PPP1R13LQ8WUF5 828 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 COPS5Q92905 334 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 KHSRPQ92945 711 aaKnown RBP eCLIP7.24□□□□□ -1.25
VRK3-220ENST00000600259 MTG1Q9BT17 334 aaPredicted RBP7.24□□□□□ -1.25
VRK3-220ENST00000600259 NACAP1Q9BZK3 213 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 NAPBQ9H115 298 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 EPHX3Q9H6B9 360 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 TCP11L1Q9NUJ3 509 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 POLR3EQ9NVU0 708 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 CCPG1Q9ULG6 757 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 STX8Q9UNK0 236 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 PCDHB15Q9Y5E8 787 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 TTC41PQ6P2S7 1318 aa7.24□□□□□ -1.25
VRK3-220ENST00000600259 MYH7P12883 1935 aa7.23□□□□□ -1.25
VRK3-220ENST00000600259 TSPY2A6NKD2 308 aa7.23□□□□□ -1.25
VRK3-220ENST00000600259 ZBBXA8MT70 800 aa7.23□□□□□ -1.25
VRK3-220ENST00000600259 PITPNM1O00562 1244 aa7.23□□□□□ -1.25
VRK3-220ENST00000600259 ARIH2O95376 493 aa7.23□□□□□ -1.25
VRK3-220ENST00000600259 SLC3A2P08195 630 aaKnown RBP7.23□□□□□ -1.25
VRK3-220ENST00000600259 SNHG28P0DPA3 235 aa7.23□□□□□ -1.25
VRK3-220ENST00000600259 IKQ13123 557 aaPredicted RBP7.23□□□□□ -1.25
VRK3-220ENST00000600259 TCTN1Q2MV58 587 aa7.23□□□□□ -1.25
VRK3-220ENST00000600259 PPP4R3BQ5MIZ7 849 aa7.23□□□□□ -1.25
VRK3-220ENST00000600259 SYDE2Q5VT97 1194 aa7.23□□□□□ -1.25
VRK3-220ENST00000600259 NFRKBQ6P4R8 1299 aa7.23□□□□□ -1.25
VRK3-220ENST00000600259 HERC6Q8IVU3 1022 aa7.23□□□□□ -1.25
VRK3-220ENST00000600259 DCAF4Q8WV16 495 aa7.23□□□□□ -1.25
VRK3-220ENST00000600259 TBC1D5Q92609 795 aa7.23□□□□□ -1.25
VRK3-220ENST00000600259 TMEM47Q9BQJ4 181 aa7.23□□□□□ -1.25
VRK3-220ENST00000600259 LRFN3Q9BTN0 628 aa7.23□□□□□ -1.25
VRK3-220ENST00000600259 CERS4Q9HA82 394 aa7.23□□□□□ -1.25
VRK3-220ENST00000600259 ADD3Q9UEY8 706 aaKnown RBP7.23□□□□□ -1.25
VRK3-220ENST00000600259 MYH4Q9Y623 1939 aa7.23□□□□□ -1.25
VRK3-220ENST00000600259 PIEZO1Q92508 2521 aa7.23□□□□□ -1.25
VRK3-220ENST00000600259 NKRFO15226 690 aaKnown RBP eCLIP7.22□□□□□ -1.25
VRK3-220ENST00000600259 RANBP6O60518 1105 aaKnown RBP7.22□□□□□ -1.25
VRK3-220ENST00000600259 KPNA6O60684 536 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 FGAP02671 866 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 MYL3P08590 195 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 TOP1P11387 765 aaKnown RBP7.22□□□□□ -1.25
VRK3-220ENST00000600259 RFC2P35250 354 aa7.22□□□□□ -1.25
VRK3-220ENST00000600259 CPT1AP50416 773 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms