RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 ALDH8A1Q9H2A2 487 aaPredicted RBP22.63■■□□□ 1.21
SHKBP1-221ENST00000599833 GOLGA8AA7E2F4 631 aa22.62■■□□□ 1.21
SHKBP1-221ENST00000599833 GOLGA8BA8MQT2 603 aa22.62■■□□□ 1.21
SHKBP1-221ENST00000599833 PDIA3P30101 505 aaKnown RBP22.62■■□□□ 1.21
SHKBP1-221ENST00000599833 ADD1P35611 737 aaKnown RBP22.62■■□□□ 1.21
SHKBP1-221ENST00000599833 RTN1Q16799 776 aa22.62■■□□□ 1.21
SHKBP1-221ENST00000599833 RNF207Q6ZRF8 634 aa22.62■■□□□ 1.21
SHKBP1-221ENST00000599833 DEFB118Q96PH6 123 aa22.62■■□□□ 1.21
SHKBP1-221ENST00000599833 TMEM106CQ9BVX2 250 aa22.62■■□□□ 1.21
SHKBP1-221ENST00000599833 RBM28Q9NW13 759 aaKnown RBP22.62■■□□□ 1.21
SHKBP1-221ENST00000599833 hCG_1642624A0A1W2PR95 340 aa22.61■■□□□ 1.21
SHKBP1-221ENST00000599833 EIF5BO60841 1220 aaKnown RBP22.61■■□□□ 1.21
SHKBP1-221ENST00000599833 HSD17B4P51659 736 aa22.61■■□□□ 1.21
SHKBP1-221ENST00000599833 NTRK3Q16288 839 aa22.61■■□□□ 1.21
SHKBP1-221ENST00000599833 SYTL5Q8TDW5 730 aaPredicted RBP22.61■■□□□ 1.21
SHKBP1-221ENST00000599833 NRBP1Q9UHY1 535 aa22.61■■□□□ 1.21
SHKBP1-221ENST00000599833 MRPL11Q9Y3B7 192 aaKnown RBP22.61■■□□□ 1.21
SHKBP1-221ENST00000599833 PCDHA1Q9Y5I3 950 aa22.61■■□□□ 1.21
SHKBP1-221ENST00000599833 ADCY6O43306 1168 aa22.6■■□□□ 1.21
SHKBP1-221ENST00000599833 EDNRBP24530 442 aa22.6■■□□□ 1.21
SHKBP1-221ENST00000599833 SYNE3Q6ZMZ3 975 aa22.6■■□□□ 1.21
SHKBP1-221ENST00000599833 ARMCX2Q7L311 632 aa22.6■■□□□ 1.21
SHKBP1-221ENST00000599833 CCDC82Q8N4S0 544 aa22.6■■□□□ 1.21
SHKBP1-221ENST00000599833 PIBF1Q8WXW3 757 aa22.6■■□□□ 1.21
SHKBP1-221ENST00000599833 LARP6Q9BRS8 491 aaKnown RBP22.6■■□□□ 1.21
SHKBP1-221ENST00000599833 PDRG1Q9NUG6 133 aa22.6■■□□□ 1.21
SHKBP1-221ENST00000599833 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.6■■□□□ 1.21
SHKBP1-221ENST00000599833 OGDHLQ9ULD0 1010 aa22.6■■□□□ 1.21
SHKBP1-221ENST00000599833 PTPDC1A2A3K4 754 aa22.59■■□□□ 1.21
SHKBP1-221ENST00000599833 METAP2P50579 478 aaKnown RBP eCLIP22.59■■□□□ 1.21
SHKBP1-221ENST00000599833 ALDH5A1P51649 535 aaPredicted RBP22.59■■□□□ 1.21
SHKBP1-221ENST00000599833 RRP36Q96EU6 259 aaKnown RBP22.59■■□□□ 1.21
SHKBP1-221ENST00000599833 DDX20Q9UHI6 824 aaKnown RBP22.59■■□□□ 1.21
SHKBP1-221ENST00000599833 SEPT4O43236 478 aa22.58■■□□□ 1.21
SHKBP1-221ENST00000599833 CALML3P27482 149 aa22.58■■□□□ 1.21
SHKBP1-221ENST00000599833 RBM25P49756 843 aaKnown RBP22.58■■□□□ 1.21
SHKBP1-221ENST00000599833 TYW1BQ6NUM6 668 aa22.58■■□□□ 1.21
SHKBP1-221ENST00000599833 ZNF274Q96GC6 653 aaPredicted RBP22.58■■□□□ 1.21
SHKBP1-221ENST00000599833 FGD1P98174 961 aa22.57■■□□□ 1.2
SHKBP1-221ENST00000599833 PPP2R5BQ15173 497 aa22.57■■□□□ 1.2
SHKBP1-221ENST00000599833 TAAR1Q96RJ0 339 aa22.57■■□□□ 1.2
SHKBP1-221ENST00000599833 ALPK3Q96L96 1907 aa22.57■■□□□ 1.2
SHKBP1-221ENST00000599833 LOC102724159A0A0B4J2E5 919 aa22.56■■□□□ 1.2
SHKBP1-221ENST00000599833 AK2P54819 239 aa22.56■■□□□ 1.2
SHKBP1-221ENST00000599833 ACVR2BQ13705 512 aa22.56■■□□□ 1.2
SHKBP1-221ENST00000599833 PWP2Q15269 919 aaKnown RBP22.56■■□□□ 1.2
SHKBP1-221ENST00000599833 TAPT1Q6NXT6 567 aa22.56■■□□□ 1.2
SHKBP1-221ENST00000599833 MCF2L2Q86YR7 1114 aa22.56■■□□□ 1.2
SHKBP1-221ENST00000599833 DNERQ8NFT8 737 aa22.56■■□□□ 1.2
SHKBP1-221ENST00000599833 LENG1Q96BZ8 264 aaPredicted RBP22.56■■□□□ 1.2
SHKBP1-221ENST00000599833 NCOA5Q9HCD5 579 aaKnown RBP22.56■■□□□ 1.2
SHKBP1-221ENST00000599833 TPCN1Q9ULQ1 816 aa22.56■■□□□ 1.2
SHKBP1-221ENST00000599833 KIAA1217Q5T5P2 1943 aa22.56■■□□□ 1.2
SHKBP1-221ENST00000599833 PKN1Q16512 942 aa22.55■■□□□ 1.2
SHKBP1-221ENST00000599833 WWC2Q6AWC2 1192 aa22.55■■□□□ 1.2
SHKBP1-221ENST00000599833 SAMD3Q8N6K7 520 aa22.55■■□□□ 1.2
SHKBP1-221ENST00000599833 ABHD16BQ9H3Z7 469 aa22.55■■□□□ 1.2
SHKBP1-221ENST00000599833 ASB14A6NK59 587 aa22.54■■□□□ 1.2
SHKBP1-221ENST00000599833 MEIS2O14770 477 aa22.54■■□□□ 1.2
SHKBP1-221ENST00000599833 CFBP00751 764 aa22.54■■□□□ 1.2
SHKBP1-221ENST00000599833 CCT2P78371 535 aaKnown RBP22.54■■□□□ 1.2
SHKBP1-221ENST00000599833 TMEM63BQ5T3F8 832 aa22.54■■□□□ 1.2
SHKBP1-221ENST00000599833 ANO1Q5XXA6 986 aa22.54■■□□□ 1.2
SHKBP1-221ENST00000599833 DIS3LQ8TF46 1054 aaKnown RBP22.54■■□□□ 1.2
SHKBP1-221ENST00000599833 GPKOWQ92917 476 aaPredicted RBP eCLIP22.54■■□□□ 1.2
SHKBP1-221ENST00000599833 C22orf23Q9BZE7 217 aa22.54■■□□□ 1.2
SHKBP1-221ENST00000599833 MAP3K20Q9NYL2 800 aaKnown RBP22.54■■□□□ 1.2
SHKBP1-221ENST00000599833 V9GY48 417 aaPredicted RBP22.54■■□□□ 1.2
SHKBP1-221ENST00000599833 FRMPD4Q14CM0 1322 aa22.54■■□□□ 1.2
SHKBP1-221ENST00000599833 LARGE1O95461 756 aa22.53■■□□□ 1.2
SHKBP1-221ENST00000599833 IFNAR1P17181 557 aa22.53■■□□□ 1.2
SHKBP1-221ENST00000599833 CAPN2P17655 700 aa22.53■■□□□ 1.2
SHKBP1-221ENST00000599833 HOXA13P31271 388 aaPredicted RBP22.53■■□□□ 1.2
SHKBP1-221ENST00000599833 TRAF1Q13077 416 aa22.53■■□□□ 1.2
SHKBP1-221ENST00000599833 PDGFCQ9NRA1 345 aa22.53■■□□□ 1.2
SHKBP1-221ENST00000599833 ADD3Q9UEY8 706 aaKnown RBP22.53■■□□□ 1.2
SHKBP1-221ENST00000599833 SEC63Q9UGP8 760 aaKnown RBP22.53■■□□□ 1.2
SHKBP1-221ENST00000599833 NAP1L2Q9ULW6 460 aaPredicted RBP22.53■■□□□ 1.2
SHKBP1-221ENST00000599833 CNPY2Q9Y2B0 182 aa22.53■■□□□ 1.2
SHKBP1-221ENST00000599833 PDE4DIPQ5VU43 2346 aa22.53■■□□□ 1.2
SHKBP1-221ENST00000599833 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.52■■□□□ 1.2
SHKBP1-221ENST00000599833 RBM47A0AV96 593 aaKnown RBP22.52■■□□□ 1.2
SHKBP1-221ENST00000599833 STXBP3O00186 592 aa22.52■■□□□ 1.2
SHKBP1-221ENST00000599833 PIK3CDO00329 1044 aa22.52■■□□□ 1.2
SHKBP1-221ENST00000599833 MSCO60682 206 aa22.52■■□□□ 1.2
SHKBP1-221ENST00000599833 TFRCP02786 760 aaKnown RBP22.52■■□□□ 1.2
SHKBP1-221ENST00000599833 PTGS1P23219 599 aa22.52■■□□□ 1.2
SHKBP1-221ENST00000599833 CNGA1P29973 690 aa22.52■■□□□ 1.2
SHKBP1-221ENST00000599833 SCRN1Q12765 414 aa22.52■■□□□ 1.2
SHKBP1-221ENST00000599833 CCDC144BQ3MJ40 725 aa22.52■■□□□ 1.2
SHKBP1-221ENST00000599833 FBXO16Q8IX29 292 aaPredicted RBP22.52■■□□□ 1.2
SHKBP1-221ENST00000599833 ANKLE1Q8NAG6 615 aa22.52■■□□□ 1.2
SHKBP1-221ENST00000599833 PHKBQ93100 1093 aa22.52■■□□□ 1.2
SHKBP1-221ENST00000599833 PXMP2Q9NR77 195 aa22.52■■□□□ 1.2
SHKBP1-221ENST00000599833 ZHX1Q9UKY1 873 aaPredicted RBP22.52■■□□□ 1.2
SHKBP1-221ENST00000599833 CCDC196A0A1B0GTZ2 297 aa22.51■■□□□ 1.19
SHKBP1-221ENST00000599833 PRPF3O43395 683 aaKnown RBP22.51■■□□□ 1.19
SHKBP1-221ENST00000599833 COL6A1P12109 1028 aa22.51■■□□□ 1.19
SHKBP1-221ENST00000599833 AKR1A1P14550 325 aa22.51■■□□□ 1.19
SHKBP1-221ENST00000599833 NEK4P51957 841 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms