RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 BRWD1Q9NSI6 2320 aa10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 FASNP49327 2511 aaKnown RBP10.29□□□□□ -0.76
SHKBP1-220ENST00000599716 SCN5AQ14524 2016 aa10.28□□□□□ -0.76
SHKBP1-220ENST00000599716 PATL2C9JE40 543 aaKnown RBP10.28□□□□□ -0.76
SHKBP1-220ENST00000599716 FOXP2O15409 715 aa10.28□□□□□ -0.76
SHKBP1-220ENST00000599716 DYNC1LI2O43237 492 aaPredicted RBP10.28□□□□□ -0.76
SHKBP1-220ENST00000599716 CD4P01730 458 aa10.28□□□□□ -0.76
SHKBP1-220ENST00000599716 SLC16A2P36021 539 aa10.28□□□□□ -0.76
SHKBP1-220ENST00000599716 PPARAQ07869 468 aa10.28□□□□□ -0.76
SHKBP1-220ENST00000599716 GIMAP6Q6P9H5 292 aa10.28□□□□□ -0.76
SHKBP1-220ENST00000599716 MICALL1Q8N3F8 863 aa10.28□□□□□ -0.76
SHKBP1-220ENST00000599716 PCSK9Q8NBP7 692 aaKnown RBP10.28□□□□□ -0.76
SHKBP1-220ENST00000599716 GMCL1P1Q8NEA9 526 aa10.28□□□□□ -0.76
SHKBP1-220ENST00000599716 CHST13Q8NET6 341 aa10.28□□□□□ -0.76
SHKBP1-220ENST00000599716 NEDD1Q8NHV4 660 aa10.28□□□□□ -0.76
SHKBP1-220ENST00000599716 SP7Q8TDD2 431 aaPredicted RBP10.28□□□□□ -0.76
SHKBP1-220ENST00000599716 TRERF1Q96PN7 1200 aa10.28□□□□□ -0.76
SHKBP1-220ENST00000599716 HIPK3Q9H422 1215 aa10.28□□□□□ -0.76
SHKBP1-220ENST00000599716 ACAD9Q9H845 621 aa10.28□□□□□ -0.76
SHKBP1-220ENST00000599716 SPC25Q9HBM1 224 aa10.28□□□□□ -0.76
SHKBP1-220ENST00000599716 B4GALT4O60513 344 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 SLC1A4P43007 532 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 STAT2P52630 851 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 VPS53Q5VIR6 699 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 TTBK2Q6IQ55 1244 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 NSMFQ6X4W1 530 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 TMEM199Q8N511 208 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 PI4K2BQ8TCG2 481 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 HERVK_113Q902F9 699 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 VWCEQ96DN2 955 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 UIMC1Q96RL1 719 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 FSD1Q9BTV5 496 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 NAPBQ9H115 298 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 WNT8AQ9H1J5 351 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 DCTPP1Q9H773 170 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 IL23AQ9NPF7 189 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 IL17RBQ9NRM6 502 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 FBXO40Q9UH90 709 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 PRR12Q9ULL5 1215 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 STX8Q9UNK0 236 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 GNEQ9Y223 722 aaKnown RBP10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 VPS13AQ96RL7 3174 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 MROH7Q68CQ1 1323 aa10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 SETXQ7Z333 2677 aaKnown RBP10.27□□□□□ -0.77
SHKBP1-220ENST00000599716 PLIN4Q96Q06 1357 aa10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 UNC79Q9P2D8 2635 aa10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 RFXAPO00287 272 aa10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 TLR3O15455 904 aaKnown RBP10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 TLL1O43897 1013 aa10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 CYP2C9P11712 490 aa10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 ITGA7Q13683 1181 aa10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 FSCN1Q16658 493 aaKnown RBP10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 CCDC96Q2M329 555 aa10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 TAPT1Q6NXT6 567 aa10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 PSRC1Q6PGN9 363 aaPredicted RBP10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 ERMP1Q7Z2K6 904 aa10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 STAG1Q8WVM7 1258 aa10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 NOC4LQ9BVI4 516 aaKnown RBP10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 AP5M1Q9H0R1 490 aa10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 CERS4Q9HA82 394 aa10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 TRMT13Q9NUP7 481 aaKnown RBP10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 CYP39A1Q9NYL5 469 aa10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 PCDHB15Q9Y5E8 787 aa10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 FRMPD2Q68DX3 1309 aaPredicted RBP10.26□□□□□ -0.77
SHKBP1-220ENST00000599716 PRRC2BQ5JSZ5 2229 aaKnown RBP10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 TSPY2A6NKD2 308 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 ZBBXA8MT70 800 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 NFIBO00712 420 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 FGBP02675 491 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 GNAT2P19087 354 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 OAZ1P54368 228 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 PDE4BQ07343 736 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 TTLL4Q14679 1199 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 CSPP1Q1MSJ5 1256 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 ZMYM1Q5SVZ6 1142 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 KRT40Q6A162 431 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 SLC30A10Q6XR72 485 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 KIAA1211Q6ZU35 1233 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 SPRED2Q7Z698 418 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 DEFB128Q7Z7B8 93 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 SLC43A3Q8NBI5 491 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 GPATCH3Q96I76 525 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 GMCL1Q96IK5 515 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 GPCPD1Q9NPB8 672 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 CCPG1Q9ULG6 757 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 COG5Q9UP83 839 aa10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.25□□□□□ -0.77
SHKBP1-220ENST00000599716 RANBP6O60518 1105 aaKnown RBP10.24□□□□□ -0.77
SHKBP1-220ENST00000599716 ARHGEF15O94989 841 aa10.24□□□□□ -0.77
SHKBP1-220ENST00000599716 ZFYP08048 801 aaPredicted RBP10.24□□□□□ -0.77
SHKBP1-220ENST00000599716 MYL3P08590 195 aa10.24□□□□□ -0.77
SHKBP1-220ENST00000599716 CHMP4BP1P59074 171 aa10.24□□□□□ -0.77
SHKBP1-220ENST00000599716 BAATQ14032 418 aaPredicted RBP10.24□□□□□ -0.77
SHKBP1-220ENST00000599716 SKIV2LQ15477 1246 aaKnown RBP10.24□□□□□ -0.77
SHKBP1-220ENST00000599716 RRP12Q5JTH9 1297 aaKnown RBP10.24□□□□□ -0.77
SHKBP1-220ENST00000599716 RCSD1Q6JBY9 416 aa10.24□□□□□ -0.77
SHKBP1-220ENST00000599716 FAM160B2Q86V87 743 aa10.24□□□□□ -0.77
SHKBP1-220ENST00000599716 CHURC1Q8WUH1 139 aa10.24□□□□□ -0.77
SHKBP1-220ENST00000599716 COPS5Q92905 334 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms