RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 RPS6P62753 249 aaKnown RBP16.42■□□□□ 0.22
LIG1-218ENST00000599322 STOX1Q6ZVD7 989 aa16.42■□□□□ 0.22
LIG1-218ENST00000599322 HOMER1Q86YM7 354 aa16.42■□□□□ 0.22
LIG1-218ENST00000599322 IGDCC4Q8TDY8 1250 aa16.42■□□□□ 0.22
LIG1-218ENST00000599322 FERMT2Q96AC1 680 aa16.42■□□□□ 0.22
LIG1-218ENST00000599322 NEK1Q96PY6 1258 aa16.42■□□□□ 0.22
LIG1-218ENST00000599322 MAP3K14Q99558 947 aa16.42■□□□□ 0.22
LIG1-218ENST00000599322 LBHD1Q9BQE6 289 aaPredicted RBP16.42■□□□□ 0.22
LIG1-218ENST00000599322 MAD2L2Q9UI95 211 aa16.42■□□□□ 0.22
LIG1-218ENST00000599322 SMCHD1A6NHR9 2005 aa16.41■□□□□ 0.22
LIG1-218ENST00000599322 MOXD2PA6NHM9 499 aa16.41■□□□□ 0.22
LIG1-218ENST00000599322 HMGB1P09429 215 aaKnown RBP16.41■□□□□ 0.22
LIG1-218ENST00000599322 MAGEA10P43363 369 aaPredicted RBP16.41■□□□□ 0.22
LIG1-218ENST00000599322 BRDTQ58F21 947 aaPredicted RBP16.41■□□□□ 0.22
LIG1-218ENST00000599322 SLC39A5Q6ZMH5 540 aa16.41■□□□□ 0.22
LIG1-218ENST00000599322 EEPD1Q7L9B9 569 aa16.41■□□□□ 0.22
LIG1-218ENST00000599322 ZNF654Q8IZM8 581 aa16.41■□□□□ 0.22
LIG1-218ENST00000599322 STAG2Q8N3U4 1231 aa16.41■□□□□ 0.22
LIG1-218ENST00000599322 SAMD3Q8N6K7 520 aa16.41■□□□□ 0.22
LIG1-218ENST00000599322 CLEC4DQ8WXI8 215 aa16.41■□□□□ 0.22
LIG1-218ENST00000599322 GLT1D1Q96MS3 346 aa16.41■□□□□ 0.22
LIG1-218ENST00000599322 SEC63Q9UGP8 760 aaKnown RBP16.41■□□□□ 0.22
LIG1-218ENST00000599322 PHF24Q9UPV7 400 aa16.41■□□□□ 0.22
LIG1-218ENST00000599322 ATP11BQ9Y2G3 1177 aa16.41■□□□□ 0.22
LIG1-218ENST00000599322 PCDHA1Q9Y5I3 950 aa16.41■□□□□ 0.22
LIG1-218ENST00000599322 SLC12A7Q9Y666 1083 aa16.41■□□□□ 0.22
LIG1-218ENST00000599322 LIFRP42702 1097 aa16.4■□□□□ 0.22
LIG1-218ENST00000599322 RTP1P59025 263 aa16.4■□□□□ 0.22
LIG1-218ENST00000599322 LRRC26Q2I0M4 334 aa16.4■□□□□ 0.22
LIG1-218ENST00000599322 GNASQ5JWF2 1037 aa16.4■□□□□ 0.22
LIG1-218ENST00000599322 SLC30A10Q6XR72 485 aa16.4■□□□□ 0.22
LIG1-218ENST00000599322 NSUN6Q8TEA1 469 aaKnown RBP16.4■□□□□ 0.22
LIG1-218ENST00000599322 RRP36Q96EU6 259 aaKnown RBP16.4■□□□□ 0.22
LIG1-218ENST00000599322 FGD4Q96M96 766 aa16.4■□□□□ 0.22
LIG1-218ENST00000599322 STARD7Q9NQZ5 370 aa16.4■□□□□ 0.22
LIG1-218ENST00000599322 MAP3K20Q9NYL2 800 aaKnown RBP16.4■□□□□ 0.22
LIG1-218ENST00000599322 TAF6LQ9Y6J9 622 aa16.4■□□□□ 0.22
LIG1-218ENST00000599322 SYNRGQ9UMZ2 1314 aa16.4■□□□□ 0.22
LIG1-218ENST00000599322 PNMA6FA0A0J9YX94 578 aa16.39■□□□□ 0.21
LIG1-218ENST00000599322 CFBP00751 764 aa16.39■□□□□ 0.21
LIG1-218ENST00000599322 GJA9P57773 515 aa16.39■□□□□ 0.21
LIG1-218ENST00000599322 ANTXR2P58335 489 aa16.39■□□□□ 0.21
LIG1-218ENST00000599322 TROAPQ12815 778 aa16.39■□□□□ 0.21
LIG1-218ENST00000599322 ARHGEF16Q5VV41 709 aa16.39■□□□□ 0.21
LIG1-218ENST00000599322 LY9Q9HBG7 655 aa16.39■□□□□ 0.21
LIG1-218ENST00000599322 Q9Y3F1 56 aa16.39■□□□□ 0.21
LIG1-218ENST00000599322 SH2B2O14492 632 aaPredicted RBP16.38■□□□□ 0.21
LIG1-218ENST00000599322 DYNC1LI2O43237 492 aaPredicted RBP16.38■□□□□ 0.21
LIG1-218ENST00000599322 EIF5BO60841 1220 aaKnown RBP16.38■□□□□ 0.21
LIG1-218ENST00000599322 ADAMTS4O75173 837 aa16.38■□□□□ 0.21
LIG1-218ENST00000599322 SMARCA1P28370 1054 aa16.38■□□□□ 0.21
LIG1-218ENST00000599322 ACLYP53396 1101 aa16.38■□□□□ 0.21
LIG1-218ENST00000599322 KCNA10Q16322 511 aa16.38■□□□□ 0.21
LIG1-218ENST00000599322 DHX32Q7L7V1 743 aaKnown RBP16.38■□□□□ 0.21
LIG1-218ENST00000599322 FBXO16Q8IX29 292 aaPredicted RBP16.38■□□□□ 0.21
LIG1-218ENST00000599322 MORC4Q8TE76 937 aa16.38■□□□□ 0.21
LIG1-218ENST00000599322 PIGSQ96S52 555 aa16.38■□□□□ 0.21
LIG1-218ENST00000599322 IWS1Q96ST2 819 aa16.38■□□□□ 0.21
LIG1-218ENST00000599322 RIOX1Q9H6W3 641 aa16.38■□□□□ 0.21
LIG1-218ENST00000599322 A0A1W2PQ45 241 aaPredicted RBP16.37■□□□□ 0.21
LIG1-218ENST00000599322 A0A1W2PQY0 241 aa16.37■□□□□ 0.21
LIG1-218ENST00000599322 DCDC2CA8MYV0 355 aa16.37■□□□□ 0.21
LIG1-218ENST00000599322 NKRFO15226 690 aaKnown RBP eCLIP16.37■□□□□ 0.21
LIG1-218ENST00000599322 CABYRO75952 493 aa16.37■□□□□ 0.21
LIG1-218ENST00000599322 CST5P28325 142 aaPredicted RBP16.37■□□□□ 0.21
LIG1-218ENST00000599322 STXBP2Q15833 593 aa16.37■□□□□ 0.21
LIG1-218ENST00000599322 C1orf53Q5VUE5 145 aa16.37■□□□□ 0.21
LIG1-218ENST00000599322 TLK2Q86UE8 772 aa16.37■□□□□ 0.21
LIG1-218ENST00000599322 TDHQ8IZJ6 230 aa16.37■□□□□ 0.21
LIG1-218ENST00000599322 KLHDC9Q8NEP7 349 aa16.37■□□□□ 0.21
LIG1-218ENST00000599322 SCFD2Q8WU76 684 aa16.37■□□□□ 0.21
LIG1-218ENST00000599322 CUL5Q93034 780 aa16.37■□□□□ 0.21
LIG1-218ENST00000599322 LENG1Q96BZ8 264 aaPredicted RBP16.37■□□□□ 0.21
LIG1-218ENST00000599322 PURBQ96QR8 312 aaKnown RBP16.37■□□□□ 0.21
LIG1-218ENST00000599322 RMDN3Q96TC7 470 aa16.37■□□□□ 0.21
LIG1-218ENST00000599322 WDR11Q9BZH6 1224 aa16.37■□□□□ 0.21
LIG1-218ENST00000599322 UPF3AQ9H1J1 476 aaKnown RBP16.37■□□□□ 0.21
LIG1-218ENST00000599322 PRDM5Q9NQX1 630 aaPredicted RBP16.37■□□□□ 0.21
LIG1-218ENST00000599322 GPHNQ9NQX3 736 aaPredicted RBP16.37■□□□□ 0.21
LIG1-218ENST00000599322 ELP1O95163 1332 aa16.37■□□□□ 0.21
LIG1-218ENST00000599322 MROH7Q68CQ1 1323 aa16.37■□□□□ 0.21
LIG1-218ENST00000599322 GCOM1H8Y6P7 765 aaPredicted RBP16.36■□□□□ 0.21
LIG1-218ENST00000599322 POLR2MP0CAP2 368 aa16.36■□□□□ 0.21
LIG1-218ENST00000599322 PSMA5P28066 241 aa16.36■□□□□ 0.21
LIG1-218ENST00000599322 TTLL4Q14679 1199 aa16.36■□□□□ 0.21
LIG1-218ENST00000599322 PPP2R5BQ15173 497 aa16.36■□□□□ 0.21
LIG1-218ENST00000599322 LRIT3Q3SXY7 679 aa16.36■□□□□ 0.21
LIG1-218ENST00000599322 TSGA10IPQ3SY00 556 aa16.36■□□□□ 0.21
LIG1-218ENST00000599322 SYTL5Q8TDW5 730 aaPredicted RBP16.36■□□□□ 0.21
LIG1-218ENST00000599322 PIBF1Q8WXW3 757 aa16.36■□□□□ 0.21
LIG1-218ENST00000599322 MTMR8Q96EF0 704 aa16.36■□□□□ 0.21
LIG1-218ENST00000599322 SPZ1Q9BXG8 430 aa16.36■□□□□ 0.21
LIG1-218ENST00000599322 SEZ6LQ9BYH1 1024 aa16.36■□□□□ 0.21
LIG1-218ENST00000599322 KATNBL1Q9H079 304 aa16.36■□□□□ 0.21
LIG1-218ENST00000599322 SENP2Q9HC62 589 aa16.36■□□□□ 0.21
LIG1-218ENST00000599322 NAP1L2Q9ULW6 460 aaPredicted RBP16.36■□□□□ 0.21
LIG1-218ENST00000599322 TLR3O15455 904 aaKnown RBP16.35■□□□□ 0.21
LIG1-218ENST00000599322 ASGR1P07306 291 aa16.35■□□□□ 0.21
LIG1-218ENST00000599322 SMPD1P17405 629 aa16.35■□□□□ 0.21
LIG1-218ENST00000599322 CPT1AP50416 773 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms