RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 TAAR1Q96RJ0 339 aa16.46■□□□□ 0.23
SHKBP1-217ENST00000598558 PNMA2Q9UL42 364 aa16.46■□□□□ 0.23
SHKBP1-217ENST00000598558 MRPL11Q9Y3B7 192 aaKnown RBP16.46■□□□□ 0.23
SHKBP1-217ENST00000598558 CENPFP49454 3210 aa16.46■□□□□ 0.23
SHKBP1-217ENST00000598558 PFASO15067 1338 aa16.45■□□□□ 0.22
SHKBP1-217ENST00000598558 LARGE1O95461 756 aa16.45■□□□□ 0.22
SHKBP1-217ENST00000598558 GJB1P08034 283 aa16.45■□□□□ 0.22
SHKBP1-217ENST00000598558 ZNF865P0CJ78 1059 aaPredicted RBP16.45■□□□□ 0.22
SHKBP1-217ENST00000598558 STK3Q13188 491 aa16.45■□□□□ 0.22
SHKBP1-217ENST00000598558 IFFO2Q5TF58 517 aa16.45■□□□□ 0.22
SHKBP1-217ENST00000598558 LHX8Q68G74 356 aa16.45■□□□□ 0.22
SHKBP1-217ENST00000598558 TYW1BQ6NUM6 668 aa16.45■□□□□ 0.22
SHKBP1-217ENST00000598558 ZNF467Q7Z7K2 595 aaPredicted RBP16.45■□□□□ 0.22
SHKBP1-217ENST00000598558 DEFB118Q96PH6 123 aa16.45■□□□□ 0.22
SHKBP1-217ENST00000598558 KATNBL1Q9H079 304 aa16.45■□□□□ 0.22
SHKBP1-217ENST00000598558 HMX1Q9NP08 348 aaPredicted RBP16.45■□□□□ 0.22
SHKBP1-217ENST00000598558 HSD17B4P51659 736 aa16.44■□□□□ 0.22
SHKBP1-217ENST00000598558 GHRHRQ02643 423 aa16.44■□□□□ 0.22
SHKBP1-217ENST00000598558 PKN1Q16512 942 aa16.44■□□□□ 0.22
SHKBP1-217ENST00000598558 NOL8Q76FK4 1167 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-217ENST00000598558 ARMCX2Q7L311 632 aa16.44■□□□□ 0.22
SHKBP1-217ENST00000598558 U2AF1L4Q8WU68 220 aaKnown RBP16.44■□□□□ 0.22
SHKBP1-217ENST00000598558 GPKOWQ92917 476 aaPredicted RBP eCLIP16.44■□□□□ 0.22
SHKBP1-217ENST00000598558 PHKBQ93100 1093 aa16.44■□□□□ 0.22
SHKBP1-217ENST00000598558 TMEM106CQ9BVX2 250 aa16.44■□□□□ 0.22
SHKBP1-217ENST00000598558 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.44■□□□□ 0.22
SHKBP1-217ENST00000598558 ADAMTS3O15072 1205 aa16.43■□□□□ 0.22
SHKBP1-217ENST00000598558 SGPL1O95470 568 aa16.43■□□□□ 0.22
SHKBP1-217ENST00000598558 CFBP00751 764 aa16.43■□□□□ 0.22
SHKBP1-217ENST00000598558 HOXA13P31271 388 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-217ENST00000598558 GJA8P48165 433 aa16.43■□□□□ 0.22
SHKBP1-217ENST00000598558 ALDH5A1P51649 535 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-217ENST00000598558 SCRN1Q12765 414 aa16.43■□□□□ 0.22
SHKBP1-217ENST00000598558 TMEM63BQ5T3F8 832 aa16.43■□□□□ 0.22
SHKBP1-217ENST00000598558 ANO1Q5XXA6 986 aa16.43■□□□□ 0.22
SHKBP1-217ENST00000598558 WWC2Q6AWC2 1192 aa16.43■□□□□ 0.22
SHKBP1-217ENST00000598558 MORC4Q8TE76 937 aa16.43■□□□□ 0.22
SHKBP1-217ENST00000598558 CRISPLD2Q9H0B8 497 aa16.43■□□□□ 0.22
SHKBP1-217ENST00000598558 SYNGAP1Q96PV0 1343 aa16.43■□□□□ 0.22
SHKBP1-217ENST00000598558 ADCY6O43306 1168 aa16.42■□□□□ 0.22
SHKBP1-217ENST00000598558 PFKFB2O60825 505 aa16.42■□□□□ 0.22
SHKBP1-217ENST00000598558 IFNAR1P17181 557 aa16.42■□□□□ 0.22
SHKBP1-217ENST00000598558 PTGS1P23219 599 aa16.42■□□□□ 0.22
SHKBP1-217ENST00000598558 CNGA1P29973 690 aa16.42■□□□□ 0.22
SHKBP1-217ENST00000598558 MNX1P50219 401 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-217ENST00000598558 ST3GAL1Q11201 340 aa16.42■□□□□ 0.22
SHKBP1-217ENST00000598558 PPP2R5BQ15173 497 aa16.42■□□□□ 0.22
SHKBP1-217ENST00000598558 ME3Q16798 604 aa16.42■□□□□ 0.22
SHKBP1-217ENST00000598558 MCF2L2Q86YR7 1114 aa16.42■□□□□ 0.22
SHKBP1-217ENST00000598558 MSL3Q8N5Y2 521 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-217ENST00000598558 NECAB1Q8N987 351 aa16.42■□□□□ 0.22
SHKBP1-217ENST00000598558 TBC1D32Q96NH3 1257 aa16.42■□□□□ 0.22
SHKBP1-217ENST00000598558 BAZ2BQ9UIF8 2168 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-217ENST00000598558 CCDC196A0A1B0GTZ2 297 aa16.41■□□□□ 0.22
SHKBP1-217ENST00000598558 MEIS2O14770 477 aa16.41■□□□□ 0.22
SHKBP1-217ENST00000598558 PRPF3O43395 683 aaKnown RBP16.41■□□□□ 0.22
SHKBP1-217ENST00000598558 CTDNEP1O95476 244 aa16.41■□□□□ 0.22
SHKBP1-217ENST00000598558 EDNRBP24530 442 aa16.41■□□□□ 0.22
SHKBP1-217ENST00000598558 ACVR2BQ13705 512 aa16.41■□□□□ 0.22
SHKBP1-217ENST00000598558 USP17L6PQ6QN14 398 aa16.41■□□□□ 0.22
SHKBP1-217ENST00000598558 EEPD1Q7L9B9 569 aa16.41■□□□□ 0.22
SHKBP1-217ENST00000598558 HEATR3Q7Z4Q2 680 aa16.41■□□□□ 0.22
SHKBP1-217ENST00000598558 LENG1Q96BZ8 264 aaPredicted RBP16.41■□□□□ 0.22
SHKBP1-217ENST00000598558 PDGFCQ9NRA1 345 aa16.41■□□□□ 0.22
SHKBP1-217ENST00000598558 SEC63Q9UGP8 760 aaKnown RBP16.41■□□□□ 0.22
SHKBP1-217ENST00000598558 ZNFX1Q9P2E3 1918 aaKnown RBP16.41■□□□□ 0.22
SHKBP1-217ENST00000598558 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.4■□□□□ 0.22
SHKBP1-217ENST00000598558 ASB14A6NK59 587 aa16.4■□□□□ 0.22
SHKBP1-217ENST00000598558 STXBP3O00186 592 aa16.4■□□□□ 0.22
SHKBP1-217ENST00000598558 SEPT4O43236 478 aa16.4■□□□□ 0.22
SHKBP1-217ENST00000598558 RGS19P49795 217 aa16.4■□□□□ 0.22
SHKBP1-217ENST00000598558 IRX5P78411 483 aaPredicted RBP16.4■□□□□ 0.22
SHKBP1-217ENST00000598558 TAPT1Q6NXT6 567 aa16.4■□□□□ 0.22
SHKBP1-217ENST00000598558 DDX20Q9UHI6 824 aaKnown RBP16.4■□□□□ 0.22
SHKBP1-217ENST00000598558 ZHX1Q9UKY1 873 aaPredicted RBP16.4■□□□□ 0.22
SHKBP1-217ENST00000598558 LCTP09848 1927 aa16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 BRCA2P51587 3418 aa16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 GCOM1H8Y6P7 765 aaPredicted RBP16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 TFRCP02786 760 aaKnown RBP16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 POLR2MP0CAP2 368 aa16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 ANKRD1Q15327 319 aa16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 UBE2SQ16763 222 aa16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 PFKFB3Q16875 520 aaPredicted RBP16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 FCHSD1Q86WN1 690 aa16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 FBXO16Q8IX29 292 aaPredicted RBP16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 DNERQ8NFT8 737 aa16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 IL31RAQ8NI17 732 aa16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 ZFP91Q96JP5 570 aaPredicted RBP16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 RMDN3Q96TC7 470 aa16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 SLC26A6Q9BXS9 759 aa16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 MAF1Q9H063 256 aa16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 SLKQ9H2G2 1235 aaPredicted RBP16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 ABHD16BQ9H3Z7 469 aa16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 ADD3Q9UEY8 706 aaKnown RBP16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 NRBP1Q9UHY1 535 aa16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 OGDHLQ9ULD0 1010 aa16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 CNPY2Q9Y2B0 182 aa16.39■□□□□ 0.21
SHKBP1-217ENST00000598558 CD2BP2O95400 341 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-217ENST00000598558 SCG2P13521 617 aa16.38■□□□□ 0.21
SHKBP1-217ENST00000598558 EIF2AK2P19525 551 aaKnown RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms