RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 BTBD19C9JJ37 291 aa17.37■□□□□ 0.37
TRIM28-209ENST00000597423 PPP6R2O75170 966 aa17.37■□□□□ 0.37
TRIM28-209ENST00000597423 SLC10A3P09131 477 aa17.37■□□□□ 0.37
TRIM28-209ENST00000597423 ME1P48163 572 aa17.37■□□□□ 0.37
TRIM28-209ENST00000597423 UBE2HP62256 183 aa17.37■□□□□ 0.37
TRIM28-209ENST00000597423 SREBF2Q12772 1141 aa17.37■□□□□ 0.37
TRIM28-209ENST00000597423 INF2Q27J81 1249 aa17.37■□□□□ 0.37
TRIM28-209ENST00000597423 TBCKQ8TEA7 893 aa17.37■□□□□ 0.37
TRIM28-209ENST00000597423 SMCR8Q8TEV9 937 aaPredicted RBP17.37■□□□□ 0.37
TRIM28-209ENST00000597423 BRI3BPQ8WY22 251 aa17.37■□□□□ 0.37
TRIM28-209ENST00000597423 PARK7Q99497 189 aaKnown RBP17.37■□□□□ 0.37
TRIM28-209ENST00000597423 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.37■□□□□ 0.37
TRIM28-209ENST00000597423 RNF146Q9NTX7 359 aa17.37■□□□□ 0.37
TRIM28-209ENST00000597423 TMEM260Q9NX78 707 aa17.37■□□□□ 0.37
TRIM28-209ENST00000597423 ZNF214Q9UL59 606 aaPredicted RBP17.37■□□□□ 0.37
TRIM28-209ENST00000597423 CCNA1P78396 465 aa17.36■□□□□ 0.37
TRIM28-209ENST00000597423 GHRHRQ02643 423 aa17.36■□□□□ 0.37
TRIM28-209ENST00000597423 ZNF174Q15697 407 aa17.36■□□□□ 0.37
TRIM28-209ENST00000597423 EARS2Q5JPH6 523 aaKnown RBP17.36■□□□□ 0.37
TRIM28-209ENST00000597423 RIOX2Q8IUF8 465 aa17.36■□□□□ 0.37
TRIM28-209ENST00000597423 REM2Q8IYK8 340 aaPredicted RBP17.36■□□□□ 0.37
TRIM28-209ENST00000597423 CLEC4DQ8WXI8 215 aa17.36■□□□□ 0.37
TRIM28-209ENST00000597423 CHAMP1Q96JM3 812 aa17.36■□□□□ 0.37
TRIM28-209ENST00000597423 SPATC1LQ9H0A9 340 aa17.36■□□□□ 0.37
TRIM28-209ENST00000597423 ACAD9Q9H845 621 aa17.36■□□□□ 0.37
TRIM28-209ENST00000597423 GDPD2Q9HCC8 539 aa17.36■□□□□ 0.37
TRIM28-209ENST00000597423 HOMER2Q9NSB8 354 aa17.36■□□□□ 0.37
TRIM28-209ENST00000597423 LMBRD1Q9NUN5 540 aa17.36■□□□□ 0.37
TRIM28-209ENST00000597423 MORC2Q9Y6X9 1032 aaPredicted RBP17.36■□□□□ 0.37
TRIM28-209ENST00000597423 LAD1O00515 517 aa17.35■□□□□ 0.37
TRIM28-209ENST00000597423 MBD3O95983 291 aa17.35■□□□□ 0.37
TRIM28-209ENST00000597423 GCFC2P16383 781 aaKnown RBP17.35■□□□□ 0.37
TRIM28-209ENST00000597423 HSD17B4P51659 736 aa17.35■□□□□ 0.37
TRIM28-209ENST00000597423 LETM2Q2VYF4 491 aa17.35■□□□□ 0.37
TRIM28-209ENST00000597423 RNF207Q6ZRF8 634 aa17.35■□□□□ 0.37
TRIM28-209ENST00000597423 FCHSD1Q86WN1 690 aa17.35■□□□□ 0.37
TRIM28-209ENST00000597423 GPRC5AQ8NFJ5 357 aa17.35■□□□□ 0.37
TRIM28-209ENST00000597423 PAGR1Q9BTK6 254 aa17.35■□□□□ 0.37
TRIM28-209ENST00000597423 ANO3Q9BYT9 981 aa17.35■□□□□ 0.37
TRIM28-209ENST00000597423 PCDHB6Q9Y5E3 794 aa17.35■□□□□ 0.37
TRIM28-209ENST00000597423 TRPM7Q96QT4 1865 aa17.35■□□□□ 0.37
TRIM28-209ENST00000597423 FAM205CA6NFA0 338 aa17.34■□□□□ 0.37
TRIM28-209ENST00000597423 OPLAHO14841 1288 aa17.34■□□□□ 0.37
TRIM28-209ENST00000597423 CCNT1O60563 726 aaKnown RBP17.34■□□□□ 0.37
TRIM28-209ENST00000597423 HOXA13P31271 388 aaPredicted RBP17.34■□□□□ 0.37
TRIM28-209ENST00000597423 PAXIP1Q6ZW49 1069 aaPredicted RBP17.34■□□□□ 0.37
TRIM28-209ENST00000597423 CCAR1Q8IX12 1150 aaKnown RBP17.34■□□□□ 0.37
TRIM28-209ENST00000597423 KRI1Q8N9T8 703 aaKnown RBP17.34■□□□□ 0.37
TRIM28-209ENST00000597423 FERMT2Q96AC1 680 aa17.34■□□□□ 0.37
TRIM28-209ENST00000597423 ANP32EQ9BTT0 268 aa17.34■□□□□ 0.37
TRIM28-209ENST00000597423 MROH8Q9H579 483 aa17.34■□□□□ 0.37
TRIM28-209ENST00000597423 CREBZFQ9NS37 354 aa17.34■□□□□ 0.37
TRIM28-209ENST00000597423 BTBD7Q9P203 1132 aa17.34■□□□□ 0.37
TRIM28-209ENST00000597423 RBPJLQ9UBG7 517 aa17.34■□□□□ 0.37
TRIM28-209ENST00000597423 ADAMTS3O15072 1205 aa17.33■□□□□ 0.36
TRIM28-209ENST00000597423 MCM7P33993 719 aa17.33■□□□□ 0.36
TRIM28-209ENST00000597423 ZNF76P36508 570 aa17.33■□□□□ 0.36
TRIM28-209ENST00000597423 SREBF1P36956 1147 aa17.33■□□□□ 0.36
TRIM28-209ENST00000597423 APLP1P51693 650 aa17.33■□□□□ 0.36
TRIM28-209ENST00000597423 PTPAQ15257 358 aa17.33■□□□□ 0.36
TRIM28-209ENST00000597423 DEFB115Q30KQ5 88 aa17.33■□□□□ 0.36
TRIM28-209ENST00000597423 NOM1Q5C9Z4 860 aaKnown RBP17.33■□□□□ 0.36
TRIM28-209ENST00000597423 MUM1L1Q5H9M0 696 aa17.33■□□□□ 0.36
TRIM28-209ENST00000597423 ARL6IP4Q66PJ3 421 aaKnown RBP17.33■□□□□ 0.36
TRIM28-209ENST00000597423 ADALQ6DHV7 355 aa17.33■□□□□ 0.36
TRIM28-209ENST00000597423 PPP4R3AQ6IN85 833 aa17.33■□□□□ 0.36
TRIM28-209ENST00000597423 MOXD1Q6UVY6 613 aa17.33■□□□□ 0.36
TRIM28-209ENST00000597423 NSMFQ6X4W1 530 aa17.33■□□□□ 0.36
TRIM28-209ENST00000597423 NCAPG2Q86XI2 1143 aa17.33■□□□□ 0.36
TRIM28-209ENST00000597423 RIPK3Q9Y572 518 aa17.33■□□□□ 0.36
TRIM28-209ENST00000597423 DDX49Q9Y6V7 483 aaKnown RBP17.33■□□□□ 0.36
TRIM28-209ENST00000597423 PFASO15067 1338 aa17.32■□□□□ 0.36
TRIM28-209ENST00000597423 B4DLN1 442 aa17.32■□□□□ 0.36
TRIM28-209ENST00000597423 NFIBO00712 420 aa17.32■□□□□ 0.36
TRIM28-209ENST00000597423 MARCH6O60337 910 aa17.32■□□□□ 0.36
TRIM28-209ENST00000597423 CUTAO60888 179 aa17.32■□□□□ 0.36
TRIM28-209ENST00000597423 CYP2C8P10632 490 aa17.32■□□□□ 0.36
TRIM28-209ENST00000597423 ARHGAP4P98171 946 aa17.32■□□□□ 0.36
TRIM28-209ENST00000597423 PTGDRQ13258 359 aa17.32■□□□□ 0.36
TRIM28-209ENST00000597423 ANKRD35Q8N283 1001 aa17.32■□□□□ 0.36
TRIM28-209ENST00000597423 FAM43AQ8N2R8 423 aa17.32■□□□□ 0.36
TRIM28-209ENST00000597423 SHCBP1Q8NEM2 672 aa17.32■□□□□ 0.36
TRIM28-209ENST00000597423 TBC1D5Q92609 795 aa17.32■□□□□ 0.36
TRIM28-209ENST00000597423 PTPN18Q99952 460 aa17.32■□□□□ 0.36
TRIM28-209ENST00000597423 FTOQ9C0B1 505 aaKnown RBP eCLIP17.32■□□□□ 0.365e-6■■■■□ 23.7
TRIM28-209ENST00000597423 LOC285556D6RIA3 1793 aa17.31■□□□□ 0.36
TRIM28-209ENST00000597423 CYP3A7-CYP3A51PA0A087WV96 503 aa17.31■□□□□ 0.36
TRIM28-209ENST00000597423 A0A1W2PQ27 194 aa17.31■□□□□ 0.36
TRIM28-209ENST00000597423 A0A1W2PQ64 194 aa17.31■□□□□ 0.36
TRIM28-209ENST00000597423 A0A1W2PQD8 194 aa17.31■□□□□ 0.36
TRIM28-209ENST00000597423 TRAK2O60296 914 aa17.31■□□□□ 0.36
TRIM28-209ENST00000597423 NEMFO60524 1076 aa17.31■□□□□ 0.36
TRIM28-209ENST00000597423 CYP3A4P08684 503 aa17.31■□□□□ 0.36
TRIM28-209ENST00000597423 CYP3A7P24462 503 aa17.31■□□□□ 0.36
TRIM28-209ENST00000597423 TM4SF4P48230 202 aa17.31■□□□□ 0.36
TRIM28-209ENST00000597423 RPS6P62753 249 aaKnown RBP17.31■□□□□ 0.36
TRIM28-209ENST00000597423 ERVK-9P63128 1117 aa17.31■□□□□ 0.36
TRIM28-209ENST00000597423 ERVK-24P63145 666 aa17.31■□□□□ 0.36
TRIM28-209ENST00000597423 NOGQ13253 232 aa17.31■□□□□ 0.36
TRIM28-209ENST00000597423 BAATQ14032 418 aaPredicted RBP17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms