RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 CNGA1P29973 690 aa10.96□□□□□ -0.65
TRIM28-208ENST00000597172 FUT2Q10981 343 aa10.96□□□□□ -0.65
TRIM28-208ENST00000597172 SPP2Q13103 211 aa10.96□□□□□ -0.65
TRIM28-208ENST00000597172 RTN1Q16799 776 aa10.96□□□□□ -0.65
TRIM28-208ENST00000597172 SLC35G1Q2M3R5 365 aa10.96□□□□□ -0.65
TRIM28-208ENST00000597172 MFSD14CQ5VZR4 134 aa10.96□□□□□ -0.65
TRIM28-208ENST00000597172 SLFN13Q68D06 897 aa10.96□□□□□ -0.65
TRIM28-208ENST00000597172 USP17L2Q6R6M4 530 aa10.96□□□□□ -0.65
TRIM28-208ENST00000597172 CMTR1Q8N1G2 835 aaKnown RBP10.96□□□□□ -0.65
TRIM28-208ENST00000597172 SRBD1Q8N5C6 995 aaKnown RBP10.96□□□□□ -0.65
TRIM28-208ENST00000597172 ZNF280CQ8ND82 737 aa10.96□□□□□ -0.65
TRIM28-208ENST00000597172 NSUN7Q8NE18 718 aaKnown RBP10.96□□□□□ -0.65
TRIM28-208ENST00000597172 INTS4Q96HW7 963 aaKnown RBP10.96□□□□□ -0.65
TRIM28-208ENST00000597172 PHOX2BQ99453 314 aa10.96□□□□□ -0.65
TRIM28-208ENST00000597172 VCPKMTQ9H867 229 aa10.96□□□□□ -0.65
TRIM28-208ENST00000597172 ARHGEF10LQ9HCE6 1279 aa10.96□□□□□ -0.65
TRIM28-208ENST00000597172 CD320Q9NPF0 282 aa10.96□□□□□ -0.65
TRIM28-208ENST00000597172 MORF4L1Q9UBU8 362 aa10.96□□□□□ -0.65
TRIM28-208ENST00000597172 USP17L10C9JJH3 530 aa10.95□□□□□ -0.66
TRIM28-208ENST00000597172 KBTBD13C9JR72 458 aa10.95□□□□□ -0.66
TRIM28-208ENST00000597172 KIAA0355O15063 1070 aa10.95□□□□□ -0.66
TRIM28-208ENST00000597172 PPFIA3O75145 1194 aa10.95□□□□□ -0.66
TRIM28-208ENST00000597172 PLEKHA8P1O95397 391 aa10.95□□□□□ -0.66
TRIM28-208ENST00000597172 CLTBP09497 229 aa10.95□□□□□ -0.66
TRIM28-208ENST00000597172 GOLGA8HP0CJ92 632 aa10.95□□□□□ -0.66
TRIM28-208ENST00000597172 ZNF543Q08ER8 600 aa10.95□□□□□ -0.66
TRIM28-208ENST00000597172 PABPC4Q13310 644 aaKnown RBP eCLIP10.95□□□□□ -0.66
TRIM28-208ENST00000597172 PPP2R5BQ15173 497 aa10.95□□□□□ -0.66
TRIM28-208ENST00000597172 C1orf53Q5VUE5 145 aa10.95□□□□□ -0.66
TRIM28-208ENST00000597172 PROCA1Q8NCQ7 364 aaPredicted RBP10.95□□□□□ -0.66
TRIM28-208ENST00000597172 SMARCC2Q8TAQ2 1214 aa10.95□□□□□ -0.66
TRIM28-208ENST00000597172 KIAA1683Q9H0B3 1180 aa10.95□□□□□ -0.66
TRIM28-208ENST00000597172 ASCC2Q9H1I8 757 aaPredicted RBP10.95□□□□□ -0.66
TRIM28-208ENST00000597172 EMILIN3Q9NT22 766 aa10.95□□□□□ -0.66
TRIM28-208ENST00000597172 ACACBO00763 2458 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 FRMPD2Q68DX3 1309 aaPredicted RBP10.94□□□□□ -0.66
TRIM28-208ENST00000597172 JAK2O60674 1132 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 PARP1P09874 1014 aaKnown RBP10.94□□□□□ -0.66
TRIM28-208ENST00000597172 FDPSP14324 419 aaKnown RBP10.94□□□□□ -0.66
TRIM28-208ENST00000597172 IFNAR1P17181 557 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 MAPK4P31152 587 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 BACE1P56817 501 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 MTMR2Q13614 643 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 RAB30Q15771 203 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 ZYXQ15942 572 aaKnown RBP10.94□□□□□ -0.66
TRIM28-208ENST00000597172 MORN1Q5T089 497 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 TTBK2Q6IQ55 1244 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 TMTC3Q6ZXV5 915 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 KCTD1Q719H9 257 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 CCAR1Q8IX12 1150 aaKnown RBP10.94□□□□□ -0.66
TRIM28-208ENST00000597172 SPICE1Q8N0Z3 855 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 CCDC82Q8N4S0 544 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 CTCFLQ8NI51 663 aaPredicted RBP10.94□□□□□ -0.66
TRIM28-208ENST00000597172 DCAF4Q8WV16 495 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 GMCL1Q96IK5 515 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 NUP88Q99567 741 aaPredicted RBP10.94□□□□□ -0.66
TRIM28-208ENST00000597172 APBA2Q99767 749 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.94□□□□□ -0.661e-12■□□□□ 9.7
TRIM28-208ENST00000597172 LLPHQ9BRT6 129 aaKnown RBP10.94□□□□□ -0.66
TRIM28-208ENST00000597172 NKX2-4Q9H2Z4 354 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 CPVLQ9H3G5 476 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 SLC28A3Q9HAS3 691 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 AS3MTQ9HBK9 375 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 GPCPD1Q9NPB8 672 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 RBM28Q9NW13 759 aaKnown RBP10.94□□□□□ -0.66
TRIM28-208ENST00000597172 LRRC37A2A6NM11 1700 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 NCOR2Q9Y618 2525 aa10.94□□□□□ -0.66
TRIM28-208ENST00000597172 ATAD5Q96QE3 1844 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 TRANK1O15050 2925 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 CCDC196A0A1B0GTZ2 297 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 C19orf81C9J6K1 198 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 KLRF2D3W0D1 207 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 CYTH3O43739 400 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 DHX16O60231 1041 aaKnown RBP10.93□□□□□ -0.66
TRIM28-208ENST00000597172 MYCNP04198 464 aaPredicted RBP10.93□□□□□ -0.66
TRIM28-208ENST00000597172 BMP3P12645 472 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 ALADP13716 330 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 KIF5BP33176 963 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 DDIT3P35638 169 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 ADCYAP1R1P41586 468 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 SLC1A4P43007 532 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 ASPRV1Q53RT3 343 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 SH3D19Q5HYK7 790 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 GPRC5AQ8NFJ5 357 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 PHKBQ93100 1093 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 FERMT2Q96AC1 680 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 UBA5Q9GZZ9 404 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 SH2D4AQ9H788 454 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 GOPCQ9HD26 462 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 TMEM39AQ9NV64 488 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.93□□□□□ -0.66
TRIM28-208ENST00000597172 DOCK1Q14185 1865 aa10.93□□□□□ -0.66
TRIM28-208ENST00000597172 PTPDC1A2A3K4 754 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 CPLX1O14810 134 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 RAD21O60216 631 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 PEX10O60683 326 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 SMARCA1P28370 1054 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 GJB2P29033 226 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 SLC16A2P36021 539 aa10.92□□□□□ -0.66
TRIM28-208ENST00000597172 GNAQP50148 359 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms