RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 TMEM87AQ8NBN3 555 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 SMCR8Q8TEV9 937 aaPredicted RBP16.73■□□□□ 0.27
VRK3-212ENST00000596814 SPATA32Q96LK8 384 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 PARK7Q99497 189 aaKnown RBP16.73■□□□□ 0.27
VRK3-212ENST00000596814 PTPN18Q99952 460 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 RIPK3Q9Y572 518 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 CLIC4Q9Y696 253 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 MYH7BA7E2Y1 1941 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 SPDYE3A6NKU9 549 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 CNMDO75829 334 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 YEATS4O95619 227 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 HOXA13P31271 388 aaPredicted RBP16.73■□□□□ 0.27
VRK3-212ENST00000596814 NASPP49321 788 aaPredicted RBP16.73■□□□□ 0.27
VRK3-212ENST00000596814 APLP1P51693 650 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 TTC38Q5R3I4 469 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 LEO1Q8WVC0 666 aaPredicted RBP16.73■□□□□ 0.27
VRK3-212ENST00000596814 ANO3Q9BYT9 981 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 SPATC1LQ9H0A9 340 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 CREBZFQ9NS37 354 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 RABGAP1Q9Y3P9 1069 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 FOSP01100 380 aaPredicted RBP16.72■□□□□ 0.27
VRK3-212ENST00000596814 GHRHRQ02643 423 aa16.72■□□□□ 0.27
VRK3-212ENST00000596814 STK38Q15208 465 aa16.72■□□□□ 0.27
VRK3-212ENST00000596814 SF3A1Q15459 793 aaKnown RBP16.72■□□□□ 0.27
VRK3-212ENST00000596814 RIOX2Q8IUF8 465 aa16.72■□□□□ 0.27
VRK3-212ENST00000596814 SAMD3Q8N6K7 520 aa16.72■□□□□ 0.27
VRK3-212ENST00000596814 TBCKQ8TEA7 893 aa16.72■□□□□ 0.27
VRK3-212ENST00000596814 TBC1D5Q92609 795 aa16.72■□□□□ 0.27
VRK3-212ENST00000596814 ACAD9Q9H845 621 aa16.72■□□□□ 0.27
VRK3-212ENST00000596814 ZCCHC17Q9NP64 241 aaKnown RBP16.72■□□□□ 0.27
VRK3-212ENST00000596814 PCDHB6Q9Y5E3 794 aa16.72■□□□□ 0.27
VRK3-212ENST00000596814 ELP1O95163 1332 aa16.71■□□□□ 0.27
VRK3-212ENST00000596814 PEX10O60683 326 aa16.71■□□□□ 0.27
VRK3-212ENST00000596814 HSD17B4P51659 736 aa16.71■□□□□ 0.27
VRK3-212ENST00000596814 INHBEP58166 350 aa16.71■□□□□ 0.27
VRK3-212ENST00000596814 SREBF2Q12772 1141 aa16.71■□□□□ 0.27
VRK3-212ENST00000596814 NEK8Q86SG6 692 aa16.71■□□□□ 0.27
VRK3-212ENST00000596814 CHST13Q8NET6 341 aa16.71■□□□□ 0.27
VRK3-212ENST00000596814 TXNRD2Q9NNW7 524 aa16.71■□□□□ 0.27
VRK3-212ENST00000596814 MAP3K20Q9NYL2 800 aaKnown RBP16.71■□□□□ 0.27
VRK3-212ENST00000596814 RBPJLQ9UBG7 517 aa16.71■□□□□ 0.27
VRK3-212ENST00000596814 CEP131Q9UPN4 1083 aa16.71■□□□□ 0.27
VRK3-212ENST00000596814 IGF2BP3O00425 579 aaKnown RBP eCLIP16.7■□□□□ 0.26
VRK3-212ENST00000596814 WNT7AO00755 349 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 PRPF40AO75400 957 aaKnown RBP16.7■□□□□ 0.26
VRK3-212ENST00000596814 PTMSP20962 102 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 COPB2P35606 906 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 GCLCP48506 637 aaPredicted RBP16.7■□□□□ 0.26
VRK3-212ENST00000596814 GRM1Q13255 1194 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 CYP4F22Q6NT55 531 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 FCHSD1Q86WN1 690 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 LINC00301Q8NCQ3 95 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 KCNG4Q8TDN1 519 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.7■□□□□ 0.26
VRK3-212ENST00000596814 RCOR1Q9UKL0 485 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 RASSF10A6NK89 507 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 SLC25A27O95847 323 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 BMP15O95972 392 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 ERVK-9P63128 1117 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 ERVK-24P63145 666 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 PTPAQ15257 358 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 NSMFQ6X4W1 530 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 SLC30A10Q6XR72 485 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 RNF207Q6ZRF8 634 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 MOV10L1Q9BXT6 1211 aaKnown RBP16.7■□□□□ 0.26
VRK3-212ENST00000596814 EHMT1Q9H9B1 1298 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 FBXO40Q9UH90 709 aa16.7■□□□□ 0.26
VRK3-212ENST00000596814 SPTLC2O15270 562 aa16.69■□□□□ 0.26
VRK3-212ENST00000596814 MCM7P33993 719 aa16.69■□□□□ 0.26
VRK3-212ENST00000596814 RPS6P62753 249 aaKnown RBP16.69■□□□□ 0.26
VRK3-212ENST00000596814 SLC39A14Q15043 492 aa16.69■□□□□ 0.26
VRK3-212ENST00000596814 ZNF174Q15697 407 aa16.69■□□□□ 0.26
VRK3-212ENST00000596814 LETM2Q2VYF4 491 aa16.69■□□□□ 0.26
VRK3-212ENST00000596814 NCAPG2Q86XI2 1143 aa16.69■□□□□ 0.26
VRK3-212ENST00000596814 IFNL1Q8IU54 200 aa16.69■□□□□ 0.26
VRK3-212ENST00000596814 MAF1Q9H063 256 aa16.69■□□□□ 0.26
VRK3-212ENST00000596814 LMBRD1Q9NUN5 540 aa16.69■□□□□ 0.26
VRK3-212ENST00000596814 SREBF1P36956 1147 aa16.68■□□□□ 0.26
VRK3-212ENST00000596814 ORC2Q13416 577 aaPredicted RBP16.68■□□□□ 0.26
VRK3-212ENST00000596814 DEFB115Q30KQ5 88 aa16.68■□□□□ 0.26
VRK3-212ENST00000596814 JMYQ8N9B5 988 aa16.68■□□□□ 0.26
VRK3-212ENST00000596814 SYTL5Q8TDW5 730 aaPredicted RBP16.68■□□□□ 0.26
VRK3-212ENST00000596814 CCNT1O60563 726 aaKnown RBP16.67■□□□□ 0.26
VRK3-212ENST00000596814 ERCC3P19447 782 aa16.67■□□□□ 0.26
VRK3-212ENST00000596814 ARHGAP4P98171 946 aa16.67■□□□□ 0.26
VRK3-212ENST00000596814 NOGQ13253 232 aa16.67■□□□□ 0.26
VRK3-212ENST00000596814 BAATQ14032 418 aaPredicted RBP16.67■□□□□ 0.26
VRK3-212ENST00000596814 TAF1CQ15572 869 aaPredicted RBP16.67■□□□□ 0.26
VRK3-212ENST00000596814 Q3C1V9 767 aa16.67■□□□□ 0.26
VRK3-212ENST00000596814 ANKRD13CQ8N6S4 541 aa16.67■□□□□ 0.26
VRK3-212ENST00000596814 GPRC5AQ8NFJ5 357 aa16.67■□□□□ 0.26
VRK3-212ENST00000596814 CAPNS2Q96L46 248 aa16.67■□□□□ 0.26
VRK3-212ENST00000596814 A1CFQ9NQ94 594 aaKnown RBP16.67■□□□□ 0.26
VRK3-212ENST00000596814 COL20A1Q9P218 1284 aa16.67■□□□□ 0.26
VRK3-212ENST00000596814 MORF4L1Q9UBU8 362 aa16.67■□□□□ 0.26
VRK3-212ENST00000596814 LCTP09848 1927 aa16.67■□□□□ 0.26
VRK3-212ENST00000596814 PPP6R2O75170 966 aa16.67■□□□□ 0.26
VRK3-212ENST00000596814 ME1P48163 572 aa16.67■□□□□ 0.26
VRK3-212ENST00000596814 CCNA1P78396 465 aa16.67■□□□□ 0.26
VRK3-212ENST00000596814 SHCBP1Q8NEM2 672 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms