RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 CDC27P30260 824 aa12.83□□□□□ -0.36
LIG1-211ENST00000596457 STK3Q13188 491 aa12.83□□□□□ -0.36
LIG1-211ENST00000596457 TOB2Q14106 344 aaPredicted RBP12.83□□□□□ -0.36
LIG1-211ENST00000596457 MAP3K21Q5TCX8 1036 aa12.83□□□□□ -0.36
LIG1-211ENST00000596457 TMTC3Q6ZXV5 915 aa12.83□□□□□ -0.36
LIG1-211ENST00000596457 NOL8Q76FK4 1167 aaKnown RBP12.83□□□□□ -0.36
LIG1-211ENST00000596457 FAM133AQ8N9E0 248 aa12.83□□□□□ -0.36
LIG1-211ENST00000596457 SPZ1Q9BXG8 430 aa12.83□□□□□ -0.36
LIG1-211ENST00000596457 PAK6Q9NQU5 681 aaPredicted RBP12.83□□□□□ -0.36
LIG1-211ENST00000596457 ZHX1Q9UKY1 873 aaPredicted RBP12.83□□□□□ -0.36
LIG1-211ENST00000596457 CNPY2Q9Y2B0 182 aa12.83□□□□□ -0.36
LIG1-211ENST00000596457 ASB14A6NK59 587 aa12.82□□□□□ -0.36
LIG1-211ENST00000596457 PPFIA3O75145 1194 aa12.82□□□□□ -0.36
LIG1-211ENST00000596457 SNAI1O95863 264 aaPredicted RBP12.82□□□□□ -0.36
LIG1-211ENST00000596457 CYBAP13498 195 aa12.82□□□□□ -0.36
LIG1-211ENST00000596457 ADD1P35611 737 aaKnown RBP12.82□□□□□ -0.36
LIG1-211ENST00000596457 ANAPC15P60006 121 aa12.82□□□□□ -0.36
LIG1-211ENST00000596457 RPS6P62753 249 aaKnown RBP12.82□□□□□ -0.36
LIG1-211ENST00000596457 ARMCX2Q7L311 632 aa12.82□□□□□ -0.36
LIG1-211ENST00000596457 EEPD1Q7L9B9 569 aa12.82□□□□□ -0.36
LIG1-211ENST00000596457 MCF2L2Q86YR7 1114 aa12.82□□□□□ -0.36
LIG1-211ENST00000596457 ANKLE1Q8NAG6 615 aa12.82□□□□□ -0.36
LIG1-211ENST00000596457 SHISA4Q96DD7 197 aa12.82□□□□□ -0.36
LIG1-211ENST00000596457 FGD4Q96M96 766 aa12.82□□□□□ -0.36
LIG1-211ENST00000596457 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.82□□□□□ -0.36
LIG1-211ENST00000596457 FRMPD3Q5JV73 1810 aa12.82□□□□□ -0.36
LIG1-211ENST00000596457 SMARCA1P28370 1054 aa12.81□□□□□ -0.36
LIG1-211ENST00000596457 HOXA13P31271 388 aaPredicted RBP12.81□□□□□ -0.36
LIG1-211ENST00000596457 ALDH5A1P51649 535 aaPredicted RBP12.81□□□□□ -0.36
LIG1-211ENST00000596457 TRAF1Q13077 416 aa12.81□□□□□ -0.36
LIG1-211ENST00000596457 UBE2Q1Q7Z7E8 422 aa12.81□□□□□ -0.36
LIG1-211ENST00000596457 ZNF467Q7Z7K2 595 aaPredicted RBP12.81□□□□□ -0.36
LIG1-211ENST00000596457 TAAR1Q96RJ0 339 aa12.81□□□□□ -0.36
LIG1-211ENST00000596457 CRISPLD2Q9H0B8 497 aa12.81□□□□□ -0.36
LIG1-211ENST00000596457 NCOA5Q9HCD5 579 aaKnown RBP12.81□□□□□ -0.36
LIG1-211ENST00000596457 FAM217BQ9NTX9 383 aaPredicted RBP12.81□□□□□ -0.36
LIG1-211ENST00000596457 ADD3Q9UEY8 706 aaKnown RBP12.81□□□□□ -0.36
LIG1-211ENST00000596457 DDX20Q9UHI6 824 aaKnown RBP12.81□□□□□ -0.36
LIG1-211ENST00000596457 V9GY48 417 aaPredicted RBP12.81□□□□□ -0.36
LIG1-211ENST00000596457 SYNGAP1Q96PV0 1343 aa12.81□□□□□ -0.36
LIG1-211ENST00000596457 CCDC196A0A1B0GTZ2 297 aa12.8□□□□□ -0.36
LIG1-211ENST00000596457 IGHA2P01877 340 aa12.8□□□□□ -0.36
LIG1-211ENST00000596457 ZNF865P0CJ78 1059 aaPredicted RBP12.8□□□□□ -0.36
LIG1-211ENST00000596457 PDIA3P30101 505 aaKnown RBP12.8□□□□□ -0.36
LIG1-211ENST00000596457 NEK4P51957 841 aa12.8□□□□□ -0.36
LIG1-211ENST00000596457 PDE4DQ08499 809 aa12.8□□□□□ -0.36
LIG1-211ENST00000596457 ACVR2BQ13705 512 aa12.8□□□□□ -0.36
LIG1-211ENST00000596457 MAMDC4Q6UXC1 1216 aa12.8□□□□□ -0.36
LIG1-211ENST00000596457 HEATR3Q7Z4Q2 680 aa12.8□□□□□ -0.36
LIG1-211ENST00000596457 FCHSD1Q86WN1 690 aa12.8□□□□□ -0.36
LIG1-211ENST00000596457 MSL3Q8N5Y2 521 aaKnown RBP12.8□□□□□ -0.36
LIG1-211ENST00000596457 RGS22Q8NE09 1264 aa12.8□□□□□ -0.36
LIG1-211ENST00000596457 GPKOWQ92917 476 aaPredicted RBP eCLIP12.8□□□□□ -0.36
LIG1-211ENST00000596457 AGXT2Q9BYV1 514 aa12.8□□□□□ -0.36
LIG1-211ENST00000596457 C22orf23Q9BZE7 217 aa12.8□□□□□ -0.36
LIG1-211ENST00000596457 HTTP42858 3142 aa12.8□□□□□ -0.36
LIG1-211ENST00000596457 ASTN1O14525 1302 aa12.8□□□□□ -0.36
LIG1-211ENST00000596457 CNTNAP5Q8WYK1 1306 aa12.8□□□□□ -0.36
LIG1-211ENST00000596457 GCOM1H8Y6P7 765 aaPredicted RBP12.79□□□□□ -0.36
LIG1-211ENST00000596457 SEPT4O43236 478 aa12.79□□□□□ -0.36
LIG1-211ENST00000596457 FARP2O94887 1054 aaPredicted RBP12.79□□□□□ -0.36
LIG1-211ENST00000596457 POLR2MP0CAP2 368 aa12.79□□□□□ -0.36
LIG1-211ENST00000596457 AK2P54819 239 aa12.79□□□□□ -0.36
LIG1-211ENST00000596457 AKAP17AQ02040 695 aaKnown RBP12.79□□□□□ -0.36
LIG1-211ENST00000596457 ARHGEF16Q5VV41 709 aa12.79□□□□□ -0.36
LIG1-211ENST00000596457 LHX8Q68G74 356 aa12.79□□□□□ -0.36
LIG1-211ENST00000596457 FBXO16Q8IX29 292 aaPredicted RBP12.79□□□□□ -0.36
LIG1-211ENST00000596457 FBXL16Q8N461 479 aa12.79□□□□□ -0.36
LIG1-211ENST00000596457 SYTL5Q8TDW5 730 aaPredicted RBP12.79□□□□□ -0.36
LIG1-211ENST00000596457 DPF3Q92784 378 aa12.79□□□□□ -0.36
LIG1-211ENST00000596457 PHKBQ93100 1093 aa12.79□□□□□ -0.36
LIG1-211ENST00000596457 LENG1Q96BZ8 264 aaPredicted RBP12.79□□□□□ -0.36
LIG1-211ENST00000596457 MPHOSPH6Q99547 160 aaKnown RBP12.79□□□□□ -0.36
LIG1-211ENST00000596457 ABHD16BQ9H3Z7 469 aa12.79□□□□□ -0.36
LIG1-211ENST00000596457 UPF2Q9HAU5 1272 aaKnown RBP12.79□□□□□ -0.36
LIG1-211ENST00000596457 COL20A1Q9P218 1284 aa12.79□□□□□ -0.36
LIG1-211ENST00000596457 FAM184BQ9ULE4 1060 aa12.79□□□□□ -0.36
LIG1-211ENST00000596457 NR2E3Q9Y5X4 410 aa12.79□□□□□ -0.36
LIG1-211ENST00000596457 B4DLN1 442 aa12.78□□□□□ -0.36
LIG1-211ENST00000596457 CPLX1O14810 134 aa12.78□□□□□ -0.36
LIG1-211ENST00000596457 OPLAHO14841 1288 aa12.78□□□□□ -0.36
LIG1-211ENST00000596457 MSCO60682 206 aa12.78□□□□□ -0.36
LIG1-211ENST00000596457 RARBP10826 455 aa12.78□□□□□ -0.36
LIG1-211ENST00000596457 MYCLP12524 364 aaPredicted RBP12.78□□□□□ -0.36
LIG1-211ENST00000596457 AKR1A1P14550 325 aa12.78□□□□□ -0.36
LIG1-211ENST00000596457 EIF2AK2P19525 551 aaKnown RBP12.78□□□□□ -0.36
LIG1-211ENST00000596457 MRPL12P52815 198 aaKnown RBP12.78□□□□□ -0.36
LIG1-211ENST00000596457 RCAN1P53805 252 aa12.78□□□□□ -0.36
LIG1-211ENST00000596457 NAPAP54920 295 aa12.78□□□□□ -0.36
LIG1-211ENST00000596457 PPP2R5BQ15173 497 aa12.78□□□□□ -0.36
LIG1-211ENST00000596457 CCDC144BQ3MJ40 725 aa12.78□□□□□ -0.36
LIG1-211ENST00000596457 GJC2Q5T442 439 aaPredicted RBP12.78□□□□□ -0.36
LIG1-211ENST00000596457 NECAB2Q7Z6G3 386 aa12.78□□□□□ -0.36
LIG1-211ENST00000596457 SMARCC2Q8TAQ2 1214 aa12.78□□□□□ -0.36
LIG1-211ENST00000596457 DIS3LQ8TF46 1054 aaKnown RBP12.78□□□□□ -0.36
LIG1-211ENST00000596457 CUL5Q93034 780 aa12.78□□□□□ -0.36
LIG1-211ENST00000596457 ZNF274Q96GC6 653 aaPredicted RBP12.78□□□□□ -0.36
LIG1-211ENST00000596457 RMDN3Q96TC7 470 aa12.78□□□□□ -0.36
LIG1-211ENST00000596457 SLC26A6Q9BXS9 759 aa12.78□□□□□ -0.36
LIG1-211ENST00000596457 SLKQ9H2G2 1235 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms