RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 TTBK2Q6IQ55 1244 aa11.8□□□□□ -0.52
LIG1-209ENST00000596104 BTNL9Q6UXG8 535 aa11.8□□□□□ -0.52
LIG1-209ENST00000596104 RPUSD2Q8IZ73 545 aaKnown RBP11.8□□□□□ -0.52
LIG1-209ENST00000596104 DCAF4Q8WV16 495 aa11.8□□□□□ -0.52
LIG1-209ENST00000596104 SCLYQ96I15 445 aa11.8□□□□□ -0.52
LIG1-209ENST00000596104 PCDHA11Q9Y5I1 949 aa11.8□□□□□ -0.52
LIG1-209ENST00000596104 MYH4Q9Y623 1939 aa11.8□□□□□ -0.52
LIG1-209ENST00000596104 CHD7Q9P2D1 2997 aa11.79□□□□□ -0.52
LIG1-209ENST00000596104 LOC102724159A0A0B4J2E5 919 aa11.79□□□□□ -0.52
LIG1-209ENST00000596104 ORC4O43929 436 aa11.79□□□□□ -0.52
LIG1-209ENST00000596104 PFKMP08237 780 aa11.79□□□□□ -0.52
LIG1-209ENST00000596104 CYP2C9P11712 490 aa11.79□□□□□ -0.52
LIG1-209ENST00000596104 ATP2A2P16615 1042 aaKnown RBP11.79□□□□□ -0.52
LIG1-209ENST00000596104 SLC16A2P36021 539 aa11.79□□□□□ -0.52
LIG1-209ENST00000596104 PURAQ00577 322 aaKnown RBP11.79□□□□□ -0.52
LIG1-209ENST00000596104 TTLL4Q14679 1199 aa11.79□□□□□ -0.52
LIG1-209ENST00000596104 PWP2Q15269 919 aaKnown RBP11.79□□□□□ -0.52
LIG1-209ENST00000596104 CCDC96Q2M329 555 aa11.79□□□□□ -0.52
LIG1-209ENST00000596104 VPS53Q5VIR6 699 aa11.79□□□□□ -0.52
LIG1-209ENST00000596104 PPP2R2DQ66LE6 453 aa11.79□□□□□ -0.52
LIG1-209ENST00000596104 UHRF1Q96T88 793 aaPredicted RBP11.79□□□□□ -0.52
LIG1-209ENST00000596104 WDR11Q9BZH6 1224 aa11.79□□□□□ -0.52
LIG1-209ENST00000596104 TRMT13Q9NUP7 481 aaKnown RBP11.79□□□□□ -0.52
LIG1-209ENST00000596104 POLR3EQ9NVU0 708 aa11.79□□□□□ -0.52
LIG1-209ENST00000596104 MTMR7Q9Y216 660 aa11.79□□□□□ -0.52
LIG1-209ENST00000596104 PCDHB15Q9Y5E8 787 aa11.79□□□□□ -0.52
LIG1-209ENST00000596104 TNKSO95271 1327 aa11.79□□□□□ -0.52
LIG1-209ENST00000596104 SALL3Q9BXA9 1300 aa11.79□□□□□ -0.52
LIG1-209ENST00000596104 ZBBXA8MT70 800 aa11.78□□□□□ -0.52
LIG1-209ENST00000596104 RANBP6O60518 1105 aaKnown RBP11.78□□□□□ -0.52
LIG1-209ENST00000596104 SUPT20HL2P0C7V6 817 aa11.78□□□□□ -0.52
LIG1-209ENST00000596104 ALX1Q15699 326 aa11.78□□□□□ -0.52
LIG1-209ENST00000596104 SYDE2Q5VT97 1194 aa11.78□□□□□ -0.52
LIG1-209ENST00000596104 SLC30A10Q6XR72 485 aa11.78□□□□□ -0.52
LIG1-209ENST00000596104 CLEC4DQ8WXI8 215 aa11.78□□□□□ -0.52
LIG1-209ENST00000596104 ADD3Q9UEY8 706 aaKnown RBP11.78□□□□□ -0.52
LIG1-209ENST00000596104 BMP1P13497 986 aa11.77□□□□□ -0.53
LIG1-209ENST00000596104 POU3F3P20264 500 aaPredicted RBP11.77□□□□□ -0.53
LIG1-209ENST00000596104 MX1P20591 662 aa11.77□□□□□ -0.53
LIG1-209ENST00000596104 EDNRBP24530 442 aa11.77□□□□□ -0.53
LIG1-209ENST00000596104 CPT1AP50416 773 aa11.77□□□□□ -0.53
LIG1-209ENST00000596104 OR6J1Q8NGC5 347 aa11.77□□□□□ -0.53
LIG1-209ENST00000596104 TMEM47Q9BQJ4 181 aa11.77□□□□□ -0.53
LIG1-209ENST00000596104 MTG1Q9BT17 334 aaPredicted RBP11.77□□□□□ -0.53
LIG1-209ENST00000596104 RAPGEFL1Q9UHV5 662 aa11.77□□□□□ -0.53
LIG1-209ENST00000596104 A6NJR5 290 aa11.76□□□□□ -0.53
LIG1-209ENST00000596104 RFXAPO00287 272 aa11.76□□□□□ -0.53
LIG1-209ENST00000596104 CA3P07451 260 aa11.76□□□□□ -0.53
LIG1-209ENST00000596104 MYL3P08590 195 aa11.76□□□□□ -0.53
LIG1-209ENST00000596104 PDHBP11177 359 aa11.76□□□□□ -0.53
LIG1-209ENST00000596104 TOP1P11387 765 aaKnown RBP11.76□□□□□ -0.53
LIG1-209ENST00000596104 TFF2Q03403 129 aa11.76□□□□□ -0.53
LIG1-209ENST00000596104 NBPF20Q3BBV1 942 aa11.76□□□□□ -0.53
LIG1-209ENST00000596104 TMEM67Q5HYA8 995 aa11.76□□□□□ -0.53
LIG1-209ENST00000596104 DEFB128Q7Z7B8 93 aa11.76□□□□□ -0.53
LIG1-209ENST00000596104 NECAB3Q96P71 396 aaPredicted RBP11.76□□□□□ -0.53
LIG1-209ENST00000596104 GPCPD1Q9NPB8 672 aa11.76□□□□□ -0.53
LIG1-209ENST00000596104 TCP11L1Q9NUJ3 509 aa11.76□□□□□ -0.53
LIG1-209ENST00000596104 MTCH2Q9Y6C9 303 aa11.76□□□□□ -0.53
LIG1-209ENST00000596104 FRMPD2Q68DX3 1309 aaPredicted RBP11.76□□□□□ -0.53
LIG1-209ENST00000596104 PTPDC1A2A3K4 754 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 EPOPA6NHQ4 379 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 PITPNM1O00562 1244 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 NKRFO15226 690 aaKnown RBP eCLIP11.75□□□□□ -0.53
LIG1-209ENST00000596104 ARHGEF15O94989 841 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 FGAP02671 866 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 IQCF3P0C7M6 154 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 CALML3P27482 149 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 RFC2P35250 354 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 RPS6P62753 249 aaKnown RBP11.75□□□□□ -0.53
LIG1-209ENST00000596104 PPP2R5BQ15173 497 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 NFRKBQ6P4R8 1299 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 RNF207Q6ZRF8 634 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 MICALL1Q8N3F8 863 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 IL27Q8NEV9 243 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 PHOSPHO2Q8TCD6 241 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 SCFD2Q8WU76 684 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 PPP1R13LQ8WUF5 828 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 COPS5Q92905 334 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 SLC9A7Q96T83 725 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 TSPYL2Q9H2G4 693 aaPredicted RBP11.75□□□□□ -0.53
LIG1-209ENST00000596104 GPHNQ9NQX3 736 aaPredicted RBP11.75□□□□□ -0.53
LIG1-209ENST00000596104 LCTP09848 1927 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 WDR19Q8NEZ3 1342 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 MYO9BQ13459 2157 aa11.75□□□□□ -0.53
LIG1-209ENST00000596104 NCOR1O75376 2440 aa11.74□□□□□ -0.53
LIG1-209ENST00000596104 KPNA6O60684 536 aa11.74□□□□□ -0.53
LIG1-209ENST00000596104 SNHG28P0DPA3 235 aa11.74□□□□□ -0.53
LIG1-209ENST00000596104 ACTN1P12814 892 aa11.74□□□□□ -0.53
LIG1-209ENST00000596104 KCNQ1P51787 676 aa11.74□□□□□ -0.53
LIG1-209ENST00000596104 TAP1Q03518 808 aa11.74□□□□□ -0.53
LIG1-209ENST00000596104 PTPN11Q06124 597 aaPredicted RBP11.74□□□□□ -0.53
LIG1-209ENST00000596104 PDE4DQ08499 809 aa11.74□□□□□ -0.53
LIG1-209ENST00000596104 ZNF543Q08ER8 600 aa11.74□□□□□ -0.53
LIG1-209ENST00000596104 FAM47CQ5HY64 1035 aa11.74□□□□□ -0.53
LIG1-209ENST00000596104 RRP12Q5JTH9 1297 aaKnown RBP11.74□□□□□ -0.53
LIG1-209ENST00000596104 DNERQ8NFT8 737 aa11.74□□□□□ -0.53
LIG1-209ENST00000596104 EVI5LQ96CN4 794 aa11.74□□□□□ -0.53
LIG1-209ENST00000596104 FAM227BQ96M60 508 aa11.74□□□□□ -0.53
LIG1-209ENST00000596104 HELLSQ9NRZ9 838 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms