RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 GOLGA8BA8MQT2 603 aa16.87■□□□□ 0.29
VRK3-206ENST00000594090 MNX1P50219 401 aaPredicted RBP16.87■□□□□ 0.29
VRK3-206ENST00000594090 ALDH5A1P51649 535 aaPredicted RBP16.87■□□□□ 0.29
VRK3-206ENST00000594090 RCAN1P53805 252 aa16.87■□□□□ 0.29
VRK3-206ENST00000594090 APOBRQ0VD83 1088 aa16.87■□□□□ 0.29
VRK3-206ENST00000594090 TRAF1Q13077 416 aa16.87■□□□□ 0.29
VRK3-206ENST00000594090 RTN1Q16799 776 aa16.87■□□□□ 0.29
VRK3-206ENST00000594090 ANO1Q5XXA6 986 aa16.87■□□□□ 0.29
VRK3-206ENST00000594090 MCF2L2Q86YR7 1114 aa16.87■□□□□ 0.29
VRK3-206ENST00000594090 CMTR1Q8N1G2 835 aaKnown RBP16.87■□□□□ 0.29
VRK3-206ENST00000594090 RRP36Q96EU6 259 aaKnown RBP16.87■□□□□ 0.29
VRK3-206ENST00000594090 KATNBL1Q9H079 304 aa16.87■□□□□ 0.29
VRK3-206ENST00000594090 ABHD16BQ9H3Z7 469 aa16.87■□□□□ 0.29
VRK3-206ENST00000594090 RBM28Q9NW13 759 aaKnown RBP16.87■□□□□ 0.29
VRK3-206ENST00000594090 ZHX1Q9UKY1 873 aaPredicted RBP16.87■□□□□ 0.29
VRK3-206ENST00000594090 CYP46A1Q9Y6A2 500 aa16.87■□□□□ 0.29
VRK3-206ENST00000594090 CNTNAP5Q8WYK1 1306 aa16.87■□□□□ 0.29
VRK3-206ENST00000594090 OPLAHO14841 1288 aa16.87■□□□□ 0.29
VRK3-206ENST00000594090 AKR1A1P14550 325 aa16.87■□□□□ 0.29
VRK3-206ENST00000594090 ANAPC15P60006 121 aa16.87■□□□□ 0.29
VRK3-206ENST00000594090 ACVR2BQ13705 512 aa16.87■□□□□ 0.29
VRK3-206ENST00000594090 C8orf34Q49A92 452 aa16.87■□□□□ 0.29
VRK3-206ENST00000594090 MORC4Q8TE76 937 aa16.87■□□□□ 0.29
VRK3-206ENST00000594090 DIS3LQ8TF46 1054 aaKnown RBP16.87■□□□□ 0.29
VRK3-206ENST00000594090 TBC1D5Q92609 795 aa16.87■□□□□ 0.29
VRK3-206ENST00000594090 SEC63Q9UGP8 760 aaKnown RBP16.87■□□□□ 0.29
VRK3-206ENST00000594090 NAP1L2Q9ULW6 460 aaPredicted RBP16.87■□□□□ 0.29
VRK3-206ENST00000594090 DDX49Q9Y6V7 483 aaKnown RBP16.87■□□□□ 0.29
VRK3-206ENST00000594090 TNRC18O15417 2968 aaPredicted RBP16.86■□□□□ 0.29
VRK3-206ENST00000594090 NID2Q14112 1375 aa16.86■□□□□ 0.29
VRK3-206ENST00000594090 LOC102724159A0A0B4J2E5 919 aa16.86■□□□□ 0.29
VRK3-206ENST00000594090 SEC24BO95487 1268 aa16.86■□□□□ 0.29
VRK3-206ENST00000594090 PWP2Q15269 919 aaKnown RBP16.86■□□□□ 0.29
VRK3-206ENST00000594090 DNERQ8NFT8 737 aa16.86■□□□□ 0.29
VRK3-206ENST00000594090 SYTL5Q8TDW5 730 aaPredicted RBP16.86■□□□□ 0.29
VRK3-206ENST00000594090 UPF3BQ9BZI7 483 aaKnown RBP16.86■□□□□ 0.29
VRK3-206ENST00000594090 COL20A1Q9P218 1284 aa16.86■□□□□ 0.29
VRK3-206ENST00000594090 CFBP00751 764 aa16.85■□□□□ 0.29
VRK3-206ENST00000594090 RARBP10826 455 aa16.85■□□□□ 0.29
VRK3-206ENST00000594090 METAP2P50579 478 aaKnown RBP eCLIP16.85■□□□□ 0.29
VRK3-206ENST00000594090 HSD17B4P51659 736 aa16.85■□□□□ 0.29
VRK3-206ENST00000594090 GHRHRQ02643 423 aa16.85■□□□□ 0.29
VRK3-206ENST00000594090 TOB2Q14106 344 aaPredicted RBP16.85■□□□□ 0.29
VRK3-206ENST00000594090 CCDC82Q8N4S0 544 aa16.85■□□□□ 0.29
VRK3-206ENST00000594090 LENG1Q96BZ8 264 aaPredicted RBP16.85■□□□□ 0.29
VRK3-206ENST00000594090 PAWRQ96IZ0 340 aaKnown RBP16.85■□□□□ 0.29
VRK3-206ENST00000594090 FAM217BQ9NTX9 383 aaPredicted RBP16.85■□□□□ 0.29
VRK3-206ENST00000594090 EDNRBP24530 442 aa16.84■□□□□ 0.29
VRK3-206ENST00000594090 CDC27P30260 824 aa16.84■□□□□ 0.29
VRK3-206ENST00000594090 FUT2Q10981 343 aa16.84■□□□□ 0.29
VRK3-206ENST00000594090 CCDC144BQ3MJ40 725 aa16.84■□□□□ 0.29
VRK3-206ENST00000594090 IL17RAQ96F46 866 aa16.84■□□□□ 0.29
VRK3-206ENST00000594090 FAM184BQ9ULE4 1060 aa16.84■□□□□ 0.29
VRK3-206ENST00000594090 DNM1LO00429 736 aa16.83■□□□□ 0.28
VRK3-206ENST00000594090 ADCY6O43306 1168 aa16.83■□□□□ 0.28
VRK3-206ENST00000594090 EVCP57679 992 aa16.83■□□□□ 0.28
VRK3-206ENST00000594090 PPP2R5BQ15173 497 aa16.83■□□□□ 0.28
VRK3-206ENST00000594090 NECAB2Q7Z6G3 386 aa16.83■□□□□ 0.28
VRK3-206ENST00000594090 FBXO16Q8IX29 292 aaPredicted RBP16.83■□□□□ 0.28
VRK3-206ENST00000594090 SAMD3Q8N6K7 520 aa16.83■□□□□ 0.28
VRK3-206ENST00000594090 TAAR1Q96RJ0 339 aa16.83■□□□□ 0.28
VRK3-206ENST00000594090 MPHOSPH6Q99547 160 aaKnown RBP16.83■□□□□ 0.28
VRK3-206ENST00000594090 VTA1Q9NP79 307 aa16.83■□□□□ 0.28
VRK3-206ENST00000594090 XPNPEP3Q9NQH7 507 aa16.83■□□□□ 0.28
VRK3-206ENST00000594090 MAP3K20Q9NYL2 800 aaKnown RBP16.83■□□□□ 0.28
VRK3-206ENST00000594090 CCDC196A0A1B0GTZ2 297 aa16.82■□□□□ 0.28
VRK3-206ENST00000594090 hCG_1642624A0A1W2PR95 340 aa16.82■□□□□ 0.28
VRK3-206ENST00000594090 PDE4DQ08499 809 aa16.82■□□□□ 0.28
VRK3-206ENST00000594090 EEPD1Q7L9B9 569 aa16.82■□□□□ 0.28
VRK3-206ENST00000594090 NSUN6Q8TEA1 469 aaKnown RBP16.82■□□□□ 0.28
VRK3-206ENST00000594090 PDRG1Q9NUG6 133 aa16.82■□□□□ 0.28
VRK3-206ENST00000594090 SYNRGQ9UMZ2 1314 aa16.81■□□□□ 0.28
VRK3-206ENST00000594090 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.81■□□□□ 0.28
VRK3-206ENST00000594090 B4DLN1 442 aa16.81■□□□□ 0.28
VRK3-206ENST00000594090 GCOM1H8Y6P7 765 aaPredicted RBP16.81■□□□□ 0.28
VRK3-206ENST00000594090 DUSP11O75319 330 aaKnown RBP16.81■□□□□ 0.28
VRK3-206ENST00000594090 PGK1P00558 417 aa16.81■□□□□ 0.28
VRK3-206ENST00000594090 POLR2MP0CAP2 368 aa16.81■□□□□ 0.28
VRK3-206ENST00000594090 COL6A1P12109 1028 aa16.81■□□□□ 0.28
VRK3-206ENST00000594090 HOXA13P31271 388 aaPredicted RBP16.81■□□□□ 0.28
VRK3-206ENST00000594090 ADD1P35611 737 aaKnown RBP16.81■□□□□ 0.28
VRK3-206ENST00000594090 ADCYAP1R1P41586 468 aa16.81■□□□□ 0.28
VRK3-206ENST00000594090 MRPL12P52815 198 aaKnown RBP16.81■□□□□ 0.28
VRK3-206ENST00000594090 LRRC41Q15345 812 aa16.81■□□□□ 0.28
VRK3-206ENST00000594090 GJC2Q5T442 439 aaPredicted RBP16.81■□□□□ 0.28
VRK3-206ENST00000594090 TAPT1Q6NXT6 567 aa16.81■□□□□ 0.28
VRK3-206ENST00000594090 ARRDC4Q8NCT1 418 aa16.81■□□□□ 0.28
VRK3-206ENST00000594090 RMDN3Q96TC7 470 aa16.81■□□□□ 0.28
VRK3-206ENST00000594090 HTATIP2Q9BUP3 242 aa16.81■□□□□ 0.28
VRK3-206ENST00000594090 C11orf49Q9H6J7 331 aa16.81■□□□□ 0.28
VRK3-206ENST00000594090 PDGFCQ9NRA1 345 aa16.81■□□□□ 0.28
VRK3-206ENST00000594090 ADAMTS4O75173 837 aa16.8■□□□□ 0.28
VRK3-206ENST00000594090 PDIA3P30101 505 aaKnown RBP16.8■□□□□ 0.28
VRK3-206ENST00000594090 ARHGEF16Q5VV41 709 aa16.8■□□□□ 0.28
VRK3-206ENST00000594090 HEATR3Q7Z4Q2 680 aa16.8■□□□□ 0.28
VRK3-206ENST00000594090 PXMP2Q9NR77 195 aa16.8■□□□□ 0.28
VRK3-206ENST00000594090 ALPK3Q96L96 1907 aa16.8■□□□□ 0.28
VRK3-206ENST00000594090 KBTBD13C9JR72 458 aa16.79■□□□□ 0.28
VRK3-206ENST00000594090 MYCNP04198 464 aaPredicted RBP16.79■□□□□ 0.28
VRK3-206ENST00000594090 EIF2AK2P19525 551 aaKnown RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms