RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 RIOK1Q9BRS2 568 aaKnown RBP10.96□□□□□ -0.66
LIG3-216ENST00000593099 GCNT3O95395 438 aa10.96□□□□□ -0.66
LIG3-216ENST00000593099 TOB2Q14106 344 aaPredicted RBP10.96□□□□□ -0.66
LIG3-216ENST00000593099 TAF4BQ92750 862 aa10.96□□□□□ -0.66
LIG3-216ENST00000593099 GPRC5DQ9NZD1 345 aa10.96□□□□□ -0.66
LIG3-216ENST00000593099 PCDHA6Q9UN73 950 aa10.96□□□□□ -0.66
LIG3-216ENST00000593099 PCDHA8Q9Y5H6 950 aa10.96□□□□□ -0.66
LIG3-216ENST00000593099 STK36Q9NRP7 1315 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 LTBP4Q8N2S1 1624 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 TOPAZ1Q8N9V7 1692 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 LMO7Q8WWI1 1683 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 NEBLO76041 1014 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 UVSSAQ2YD98 709 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 FKBP1CQ5VVH2 108 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 TMC6Q7Z403 805 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 LRP10Q7Z4F1 713 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 CCDC84Q86UT8 332 aaPredicted RBP10.95□□□□□ -0.66
LIG3-216ENST00000593099 CLEC10AQ8IUN9 316 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 FAM163AQ96GL9 167 aaPredicted RBP10.95□□□□□ -0.66
LIG3-216ENST00000593099 PRDM10Q9NQV6 1147 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 TKFCQ3LXA3 575 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 VGLL2Q8N8G2 317 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 NLGN2Q8NFZ4 835 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 SLC7A3Q8WY07 619 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 ZKSCAN4Q969J2 545 aaPredicted RBP10.95□□□□□ -0.66
LIG3-216ENST00000593099 AK8Q96MA6 479 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 PRKAG2Q9UGJ0 569 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 PCDHB13Q9Y5F0 798 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 EXOC8Q8IYI6 725 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 RAET1EQ8TD07 263 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 AIFM3Q96NN9 605 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 GLIS2Q9BZE0 524 aaPredicted RBP10.95□□□□□ -0.66
LIG3-216ENST00000593099 EHD4Q9H223 541 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 TTC12Q9H892 705 aaPredicted RBP10.95□□□□□ -0.66
LIG3-216ENST00000593099 ANAPC4Q9UJX5 808 aa10.95□□□□□ -0.66
LIG3-216ENST00000593099 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.95□□□□□ -0.66
LIG3-216ENST00000593099 ANKRD62A6NC57 917 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 ASB14A6NK59 587 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 STOX1Q6ZVD7 989 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 RETREG2Q8NC44 543 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 GIMAP8Q8ND71 665 aaPredicted RBP10.94□□□□□ -0.66
LIG3-216ENST00000593099 STAMQ92783 540 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 KCNQ5Q9NR82 932 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 SEPT9Q9UHD8 586 aaPredicted RBP10.94□□□□□ -0.66
LIG3-216ENST00000593099 MYO6Q9UM54 1294 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 USO1O60763 962 aaKnown RBP10.94□□□□□ -0.66
LIG3-216ENST00000593099 LARGE1O95461 756 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 GSDMDP57764 484 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 POSTNQ15063 836 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 USP17L6PQ6QN14 398 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 ADPGKQ9BRR6 497 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 SPZ1Q9BXG8 430 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 TBC1D7Q9P0N9 293 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 LRP6O75581 1613 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 PSAPP07602 524 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 TFDP1Q14186 410 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 DCAF17Q5H9S7 520 aaPredicted RBP10.94□□□□□ -0.66
LIG3-216ENST00000593099 MRIQ9BWK5 157 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 SERTAD1Q9UHV2 236 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 COL4A3BPQ9Y5P4 624 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 EXOC3O60645 756 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 CMA1P23946 247 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 SLC39A14Q15043 492 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 PPP2R5AQ15172 486 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 TTBK2Q6IQ55 1244 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 PDXDC2PQ6P474 469 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 MLKLQ8NB16 471 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 NACC1Q96RE7 527 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 SYNCQ9H7C4 482 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 KIAA1024Q9UPX6 916 aa10.94□□□□□ -0.66
LIG3-216ENST00000593099 YY1P25490 414 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 TRPC3Q13507 836 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 TTLL4Q14679 1199 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 WDR44Q5JSH3 913 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 FAM177A1Q8N128 213 aaPredicted RBP10.93□□□□□ -0.66
LIG3-216ENST00000593099 CLSTN2Q9H4D0 955 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 SLC25A27O95847 323 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 STAG2Q8N3U4 1231 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 MAPK8IP1Q9UQF2 711 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 DDTLA6NHG4 134 aaPredicted RBP10.93□□□□□ -0.66
LIG3-216ENST00000593099 LRRIQ4A6NIV6 560 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 AKR1B10O60218 316 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 INPP5BP32019 993 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 MYL5Q02045 173 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 TAF12Q16514 161 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 FAM178BQ8IXR5 827 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 GPRC5AQ8NFJ5 357 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 CCDC102AQ96A19 550 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 IDI2Q9BXS1 227 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 BARHL2Q9NY43 387 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 PFKFB1P16118 471 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 EXOSC10Q01780 885 aaKnown RBP10.93□□□□□ -0.66
LIG3-216ENST00000593099 MTMR1Q13613 665 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 NEDD9Q14511 834 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 CSGALNACT2Q8N6G5 542 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 PRR12Q9ULL5 1215 aa10.93□□□□□ -0.66
LIG3-216ENST00000593099 H0YHG0 523 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 ZSCAN12O43309 604 aa10.92□□□□□ -0.66
LIG3-216ENST00000593099 DMP1Q13316 513 aaPredicted RBP10.92□□□□□ -0.66
LIG3-216ENST00000593099 APOBEC3HQ6NTF7 200 aaKnown RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms