RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 FBXO16Q8IX29 292 aaPredicted RBP12.77□□□□□ -0.37
LIG3-214ENST00000592244 TDHQ8IZJ6 230 aa12.77□□□□□ -0.37
LIG3-214ENST00000592244 CTCFLQ8NI51 663 aaPredicted RBP12.77□□□□□ -0.37
LIG3-214ENST00000592244 NSUN6Q8TEA1 469 aaKnown RBP12.77□□□□□ -0.37
LIG3-214ENST00000592244 LENG1Q96BZ8 264 aaPredicted RBP12.77□□□□□ -0.37
LIG3-214ENST00000592244 TMEM87BQ96K49 555 aa12.77□□□□□ -0.37
LIG3-214ENST00000592244 TOX2Q96NM4 488 aa12.77□□□□□ -0.37
LIG3-214ENST00000592244 MAP3K14Q99558 947 aa12.77□□□□□ -0.37
LIG3-214ENST00000592244 KATNBL1Q9H079 304 aa12.77□□□□□ -0.37
LIG3-214ENST00000592244 MAP3K20Q9NYL2 800 aaKnown RBP12.77□□□□□ -0.37
LIG3-214ENST00000592244 LAMA4Q16363 1823 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 A0A0U1RQG5 324 aaPredicted RBP12.76□□□□□ -0.37
LIG3-214ENST00000592244 PALM3A6NDB9 673 aaPredicted RBP12.76□□□□□ -0.37
LIG3-214ENST00000592244 CCDC69A6NI79 296 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 ZBTB5O15062 677 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 TLR3O15455 904 aaKnown RBP12.76□□□□□ -0.37
LIG3-214ENST00000592244 DYNC1LI2O43237 492 aaPredicted RBP12.76□□□□□ -0.37
LIG3-214ENST00000592244 PQBP1O60828 265 aaKnown RBP12.76□□□□□ -0.37
LIG3-214ENST00000592244 CDC45O75419 566 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 ASGR1P07306 291 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 CLTBP09497 229 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 CALM1P0DP23 149 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 CALM2P0DP24 149 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 CALM3P0DP25 149 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 GNAQP50148 359 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 CPT1AP50416 773 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 NKX3-2P78367 333 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 MDM2Q00987 491 aaPredicted RBP12.76□□□□□ -0.37
LIG3-214ENST00000592244 GRM4Q14833 912 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 FSCN1Q16658 493 aaKnown RBP12.76□□□□□ -0.37
LIG3-214ENST00000592244 SYNE3Q6ZMZ3 975 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 ANKRD33Q7Z3H0 272 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 SCFD2Q8WU76 684 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 IWS1Q96ST2 819 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 LZTS2Q9BRK4 669 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 WDR11Q9BZH6 1224 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 LSG1Q9H089 658 aaKnown RBP12.76□□□□□ -0.37
LIG3-214ENST00000592244 CPVLQ9H3G5 476 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 JMJD4Q9H9V9 463 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 GPHNQ9NQX3 736 aaPredicted RBP12.76□□□□□ -0.37
LIG3-214ENST00000592244 PCDH10Q9P2E7 1040 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 MAD2L2Q9UI95 211 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 PCDHA1Q9Y5I3 950 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 ZNFX1Q9P2E3 1918 aaKnown RBP12.76□□□□□ -0.37
LIG3-214ENST00000592244 TRIOBPQ9H2D6 2365 aa12.76□□□□□ -0.37
LIG3-214ENST00000592244 SLC27A2O14975 620 aa12.75□□□□□ -0.37
LIG3-214ENST00000592244 PRC1O43663 620 aa12.75□□□□□ -0.37
LIG3-214ENST00000592244 DDAH1O94760 285 aa12.75□□□□□ -0.37
LIG3-214ENST00000592244 KRT32Q14532 448 aa12.75□□□□□ -0.37
LIG3-214ENST00000592244 PPP2R5BQ15173 497 aa12.75□□□□□ -0.37
LIG3-214ENST00000592244 DUSP28Q4G0W2 176 aa12.75□□□□□ -0.37
LIG3-214ENST00000592244 ARHGEF16Q5VV41 709 aa12.75□□□□□ -0.37
LIG3-214ENST00000592244 CREB3L3Q68CJ9 461 aa12.75□□□□□ -0.37
LIG3-214ENST00000592244 CCSAPQ6IQ19 270 aaPredicted RBP12.75□□□□□ -0.37
LIG3-214ENST00000592244 TAPT1Q6NXT6 567 aa12.75□□□□□ -0.37
LIG3-214ENST00000592244 MB21D2Q8IYB1 491 aaPredicted RBP12.75□□□□□ -0.37
LIG3-214ENST00000592244 RMDN3Q96TC7 470 aa12.75□□□□□ -0.37
LIG3-214ENST00000592244 TMEM39AQ9NV64 488 aa12.75□□□□□ -0.37
LIG3-214ENST00000592244 PLXNA1Q9UIW2 1896 aa12.75□□□□□ -0.37
LIG3-214ENST00000592244 GNEQ9Y223 722 aaKnown RBP12.75□□□□□ -0.37
LIG3-214ENST00000592244 ASTN1O14525 1302 aa12.74□□□□□ -0.37
LIG3-214ENST00000592244 PNMA6FA0A0J9YX94 578 aa12.74□□□□□ -0.37
LIG3-214ENST00000592244 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.74□□□□□ -0.37
LIG3-214ENST00000592244 KPNA6O60684 536 aa12.74□□□□□ -0.37
LIG3-214ENST00000592244 CFBP00751 764 aa12.74□□□□□ -0.37
LIG3-214ENST00000592244 RAG1P15918 1043 aa12.74□□□□□ -0.37
LIG3-214ENST00000592244 SMPD1P17405 629 aa12.74□□□□□ -0.37
LIG3-214ENST00000592244 EDNRBP24530 442 aa12.74□□□□□ -0.37
LIG3-214ENST00000592244 TROAPQ12815 778 aa12.74□□□□□ -0.37
LIG3-214ENST00000592244 TTLL4Q14679 1199 aa12.74□□□□□ -0.37
LIG3-214ENST00000592244 STXBP2Q15833 593 aa12.74□□□□□ -0.37
LIG3-214ENST00000592244 LRIT3Q3SXY7 679 aa12.74□□□□□ -0.37
LIG3-214ENST00000592244 CHST3Q7LGC8 479 aa12.74□□□□□ -0.37
LIG3-214ENST00000592244 HOMER1Q86YM7 354 aa12.74□□□□□ -0.37
LIG3-214ENST00000592244 STAG2Q8N3U4 1231 aa12.74□□□□□ -0.37
LIG3-214ENST00000592244 IGDCC4Q8TDY8 1250 aa12.74□□□□□ -0.37
LIG3-214ENST00000592244 PDLIM7Q9NR12 457 aa12.74□□□□□ -0.37
LIG3-214ENST00000592244 POLR3EQ9NVU0 708 aa12.74□□□□□ -0.37
LIG3-214ENST00000592244 SEC63Q9UGP8 760 aaKnown RBP12.74□□□□□ -0.37
LIG3-214ENST00000592244 RBM47A0AV96 593 aaKnown RBP12.73□□□□□ -0.37
LIG3-214ENST00000592244 MYADML2A6NDP7 307 aa12.73□□□□□ -0.37
LIG3-214ENST00000592244 ARVCFO00192 962 aa12.73□□□□□ -0.37
LIG3-214ENST00000592244 KIAA0355O15063 1070 aa12.73□□□□□ -0.37
LIG3-214ENST00000592244 HMGB1P09429 215 aaKnown RBP12.73□□□□□ -0.37
LIG3-214ENST00000592244 SMARCA1P28370 1054 aa12.73□□□□□ -0.37
LIG3-214ENST00000592244 LIFRP42702 1097 aa12.73□□□□□ -0.37
LIG3-214ENST00000592244 BEX3Q00994 111 aa12.73□□□□□ -0.37
LIG3-214ENST00000592244 NECTIN1Q15223 517 aa12.73□□□□□ -0.37
LIG3-214ENST00000592244 GPR153Q6NV75 609 aa12.73□□□□□ -0.37
LIG3-214ENST00000592244 STOX1Q6ZVD7 989 aa12.73□□□□□ -0.37
LIG3-214ENST00000592244 ZNF654Q8IZM8 581 aa12.73□□□□□ -0.37
LIG3-214ENST00000592244 OR6J1Q8NGC5 347 aa12.73□□□□□ -0.37
LIG3-214ENST00000592244 SYTL5Q8TDW5 730 aaPredicted RBP12.73□□□□□ -0.37
LIG3-214ENST00000592244 MTMR8Q96EF0 704 aa12.73□□□□□ -0.37
LIG3-214ENST00000592244 RRP36Q96EU6 259 aaKnown RBP12.73□□□□□ -0.37
LIG3-214ENST00000592244 PURBQ96QR8 312 aaKnown RBP12.73□□□□□ -0.37
LIG3-214ENST00000592244 RIOX1Q9H6W3 641 aa12.73□□□□□ -0.37
LIG3-214ENST00000592244 PDGFCQ9NRA1 345 aa12.73□□□□□ -0.37
LIG3-214ENST00000592244 SLC12A7Q9Y666 1083 aa12.73□□□□□ -0.37
LIG3-214ENST00000592244 FRMPD3Q5JV73 1810 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms