RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 SH3D21A4FU49 640 aa5.67□□□□□ -1.5
VPS4B-203ENST00000588323 AURKAO14965 403 aa5.67□□□□□ -1.5
VPS4B-203ENST00000588323 PRICKLE3O43900 615 aaPredicted RBP5.67□□□□□ -1.5
VPS4B-203ENST00000588323 ASGR2P07307 311 aa5.67□□□□□ -1.5
VPS4B-203ENST00000588323 MC3RP41968 323 aa5.67□□□□□ -1.5
VPS4B-203ENST00000588323 KRTAP10-2P60368 255 aa5.67□□□□□ -1.5
VPS4B-203ENST00000588323 UBXN11Q5T124 520 aa5.67□□□□□ -1.5
VPS4B-203ENST00000588323 NT5DC1Q5TFE4 455 aa5.67□□□□□ -1.5
VPS4B-203ENST00000588323 B3GNT8Q7Z7M8 397 aa5.67□□□□□ -1.5
VPS4B-203ENST00000588323 LZTR1Q8N653 840 aa5.67□□□□□ -1.5
VPS4B-203ENST00000588323 SPATA25Q9BR10 227 aa5.67□□□□□ -1.5
VPS4B-203ENST00000588323 NUDT5Q9UKK9 219 aa5.67□□□□□ -1.5
VPS4B-203ENST00000588323 SLC12A7Q9Y666 1083 aa5.67□□□□□ -1.5
VPS4B-203ENST00000588323 LTBP3Q9NS15 1303 aa5.67□□□□□ -1.5
VPS4B-203ENST00000588323 STXBP3O00186 592 aa5.66□□□□□ -1.5
VPS4B-203ENST00000588323 SEPHS1P49903 392 aa5.66□□□□□ -1.5
VPS4B-203ENST00000588323 HTRA3P83110 453 aa5.66□□□□□ -1.5
VPS4B-203ENST00000588323 EFEMP1Q12805 493 aa5.66□□□□□ -1.5
VPS4B-203ENST00000588323 COL9A2Q14055 689 aaPredicted RBP5.66□□□□□ -1.5
VPS4B-203ENST00000588323 ZFYVE27Q5T4F4 411 aa5.66□□□□□ -1.5
VPS4B-203ENST00000588323 ADAT2Q7Z6V5 191 aaKnown RBP5.66□□□□□ -1.5
VPS4B-203ENST00000588323 GGNQ86UU5 652 aa5.66□□□□□ -1.5
VPS4B-203ENST00000588323 ZNF526Q8TF50 670 aaPredicted RBP5.66□□□□□ -1.5
VPS4B-203ENST00000588323 TSPAN17Q96FV3 270 aa5.66□□□□□ -1.5
VPS4B-203ENST00000588323 MCMBPQ9BTE3 642 aa5.66□□□□□ -1.5
VPS4B-203ENST00000588323 KLHL25Q9H0H3 589 aa5.66□□□□□ -1.5
VPS4B-203ENST00000588323 PHAXQ9H814 394 aaKnown RBP5.66□□□□□ -1.5
VPS4B-203ENST00000588323 RXFP1Q9HBX9 757 aa5.66□□□□□ -1.5
VPS4B-203ENST00000588323 DDX41Q9UJV9 622 aaKnown RBP5.66□□□□□ -1.5
VPS4B-203ENST00000588323 RWDD3Q9Y3V2 267 aa5.66□□□□□ -1.5
VPS4B-203ENST00000588323 VAMP4O75379 141 aa5.65□□□□□ -1.5
VPS4B-203ENST00000588323 PPM1BO75688 479 aa5.65□□□□□ -1.5
VPS4B-203ENST00000588323 PMLP29590 882 aa5.65□□□□□ -1.5
VPS4B-203ENST00000588323 RACK1P63244 317 aaKnown RBP5.65□□□□□ -1.5
VPS4B-203ENST00000588323 SLC9A5Q14940 896 aa5.65□□□□□ -1.5
VPS4B-203ENST00000588323 DPY19L1Q2PZI1 675 aa5.65□□□□□ -1.5
VPS4B-203ENST00000588323 FERMT3Q86UX7 667 aa5.65□□□□□ -1.5
VPS4B-203ENST00000588323 PEX11GQ96HA9 241 aa5.65□□□□□ -1.5
VPS4B-203ENST00000588323 BCAS3Q9H6U6 928 aa5.65□□□□□ -1.5
VPS4B-203ENST00000588323 GINM1Q9NU53 330 aa5.65□□□□□ -1.5
VPS4B-203ENST00000588323 BACE2Q9Y5Z0 518 aa5.65□□□□□ -1.5
VPS4B-203ENST00000588323 C2orf71A6NGG8 1288 aa5.64□□□□□ -1.51
VPS4B-203ENST00000588323 K7ESM1 405 aa5.64□□□□□ -1.51
VPS4B-203ENST00000588323 EPHX1P07099 455 aa5.64□□□□□ -1.51
VPS4B-203ENST00000588323 PAMP19021 973 aa5.64□□□□□ -1.51
VPS4B-203ENST00000588323 EIF6P56537 245 aaKnown RBP5.64□□□□□ -1.51
VPS4B-203ENST00000588323 RBM10P98175 930 aaKnown RBP5.64□□□□□ -1.51
VPS4B-203ENST00000588323 AMPD2Q01433 879 aa5.64□□□□□ -1.51
VPS4B-203ENST00000588323 SLC7A5Q01650 507 aa5.64□□□□□ -1.51
VPS4B-203ENST00000588323 TRIM26Q12899 539 aaPredicted RBP5.64□□□□□ -1.51
VPS4B-203ENST00000588323 CARFQ8N187 725 aa5.64□□□□□ -1.51
VPS4B-203ENST00000588323 NETO2Q8NC67 525 aa5.64□□□□□ -1.51
VPS4B-203ENST00000588323 USP33Q8TEY7 942 aa5.64□□□□□ -1.51
VPS4B-203ENST00000588323 SPATA32Q96LK8 384 aa5.64□□□□□ -1.51
VPS4B-203ENST00000588323 FGD4Q96M96 766 aa5.64□□□□□ -1.51
VPS4B-203ENST00000588323 CNOT11Q9UKZ1 510 aaKnown RBP5.64□□□□□ -1.51
VPS4B-203ENST00000588323 PCDHB10Q9UN67 800 aa5.64□□□□□ -1.51
VPS4B-203ENST00000588323 TRBV23OR9-2A0A075B6M9 112 aa5.63□□□□□ -1.51
VPS4B-203ENST00000588323 ZBTB7AO95365 584 aa5.63□□□□□ -1.51
VPS4B-203ENST00000588323 GJA9P57773 515 aa5.63□□□□□ -1.51
VPS4B-203ENST00000588323 PAK2Q13177 524 aa5.63□□□□□ -1.51
VPS4B-203ENST00000588323 CPNE8Q86YQ8 564 aa5.63□□□□□ -1.51
VPS4B-203ENST00000588323 ZNF654Q8IZM8 581 aa5.63□□□□□ -1.51
VPS4B-203ENST00000588323 C19orf47Q8N9M1 422 aaKnown RBP5.63□□□□□ -1.51
VPS4B-203ENST00000588323 OR6P1Q8NGX9 317 aa5.63□□□□□ -1.51
VPS4B-203ENST00000588323 SMARCC2Q8TAQ2 1214 aa5.63□□□□□ -1.51
VPS4B-203ENST00000588323 CPA5Q8WXQ8 436 aa5.63□□□□□ -1.51
VPS4B-203ENST00000588323 NTMQ9P121 344 aa5.63□□□□□ -1.51
VPS4B-203ENST00000588323 GULP1Q9UBP9 304 aa5.63□□□□□ -1.51
VPS4B-203ENST00000588323 CGGBP1Q9UFW8 167 aaPredicted RBP5.63□□□□□ -1.51
VPS4B-203ENST00000588323 EFR3BQ9Y2G0 817 aa5.63□□□□□ -1.51
VPS4B-203ENST00000588323 SUGT1Q9Y2Z0 365 aa5.63□□□□□ -1.51
VPS4B-203ENST00000588323 NPHP3-ACAD11A0A0J9YXS1 232 aa5.62□□□□□ -1.51
VPS4B-203ENST00000588323 SOX9P48436 509 aa5.62□□□□□ -1.51
VPS4B-203ENST00000588323 DLX2Q07687 328 aaPredicted RBP5.62□□□□□ -1.51
VPS4B-203ENST00000588323 CACNB2Q08289 660 aaPredicted RBP5.62□□□□□ -1.51
VPS4B-203ENST00000588323 GRB10Q13322 594 aa5.62□□□□□ -1.51
VPS4B-203ENST00000588323 ZXDCQ2QGD7 858 aaPredicted RBP5.62□□□□□ -1.51
VPS4B-203ENST00000588323 WWC2Q6AWC2 1192 aa5.62□□□□□ -1.51
VPS4B-203ENST00000588323 ARHGEF39Q8N4T4 335 aa5.62□□□□□ -1.51
VPS4B-203ENST00000588323 DDX1Q92499 740 aaKnown RBP5.62□□□□□ -1.51
VPS4B-203ENST00000588323 MTA3Q9BTC8 594 aa5.62□□□□□ -1.51
VPS4B-203ENST00000588323 FBLN5Q9UBX5 448 aa5.62□□□□□ -1.51
VPS4B-203ENST00000588323 PALD1Q9ULE6 856 aa5.62□□□□□ -1.51
VPS4B-203ENST00000588323 A0A1W2PQH9 124 aa5.61□□□□□ -1.51
VPS4B-203ENST00000588323 NOBOXO60393 691 aa5.61□□□□□ -1.51
VPS4B-203ENST00000588323 NPHS1O60500 1241 aa5.61□□□□□ -1.51
VPS4B-203ENST00000588323 PPP1R11O60927 126 aaPredicted RBP5.61□□□□□ -1.51
VPS4B-203ENST00000588323 CNR2P34972 360 aa5.61□□□□□ -1.51
VPS4B-203ENST00000588323 GIPRP48546 466 aa5.61□□□□□ -1.51
VPS4B-203ENST00000588323 SARSP49591 514 aaKnown RBP5.61□□□□□ -1.51
VPS4B-203ENST00000588323 PPP2R5EQ16537 467 aa5.61□□□□□ -1.51
VPS4B-203ENST00000588323 ZNF827Q17R98 1081 aa5.61□□□□□ -1.51
VPS4B-203ENST00000588323 TMCO4Q5TGY1 634 aa5.61□□□□□ -1.51
VPS4B-203ENST00000588323 HHIPL2Q6UWX4 724 aa5.61□□□□□ -1.51
VPS4B-203ENST00000588323 TTLL7Q6ZT98 887 aa5.61□□□□□ -1.51
VPS4B-203ENST00000588323 KLHL6Q8WZ60 621 aa5.61□□□□□ -1.51
VPS4B-203ENST00000588323 ZBTB8AQ96BR9 441 aa5.61□□□□□ -1.51
VPS4B-203ENST00000588323 RCC1LQ96I51 464 aaKnown RBP5.61□□□□□ -1.51
VPS4B-203ENST00000588323 NOX5Q96PH1 765 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms