RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 CCPG1Q9ULG6 757 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 PRR12Q9ULL5 1215 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 RABGAP1Q9Y3P9 1069 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 CLIC4Q9Y696 253 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 ZHX2Q9Y6X8 837 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 SMCHD1A6NHR9 2005 aa7.04□□□□□ -1.28
LIG3-206ENST00000586058 MYPNQ86TC9 1320 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 MYH9P35579 1960 aaKnown RBP7.03□□□□□ -1.28
LIG3-206ENST00000586058 A0A1W2PRG0 241 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 UNCXA6NJT0 531 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 GADD45BO75293 160 aaPredicted RBP7.03□□□□□ -1.28
LIG3-206ENST00000586058 ICAM1P05362 532 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 VCAM1P19320 739 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 MARCKSP29966 332 aaPredicted RBP7.03□□□□□ -1.28
LIG3-206ENST00000586058 MCM7P33993 719 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 HMGCS2P54868 508 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 FKBP1BP68106 108 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 IRX3P78415 501 aaPredicted RBP7.03□□□□□ -1.28
LIG3-206ENST00000586058 PPATQ06203 517 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 VGLL4Q14135 290 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 MAP3K11Q16584 847 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 INF2Q27J81 1249 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 LETM2Q2VYF4 491 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 ZSCAN23Q3MJ62 389 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 PRAMEF18Q5VWM3 479 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 JAKMIP3Q5VZ66 844 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 ARL6IP4Q66PJ3 421 aaKnown RBP7.03□□□□□ -1.28
LIG3-206ENST00000586058 KANK3Q6NY19 840 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 SASS6Q6UVJ0 657 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 LDHDQ86WU2 507 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 ERO1BQ86YB8 467 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 SAMD3Q8N6K7 520 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 PROCA1Q8NCQ7 364 aaPredicted RBP7.03□□□□□ -1.28
LIG3-206ENST00000586058 GPT2Q8TD30 523 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 OXER1Q8TDS5 423 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 MTMR8Q96EF0 704 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 CHAMP1Q96JM3 812 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 C12orf42Q96LP6 360 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 FTOQ9C0B1 505 aaKnown RBP eCLIP7.03□□□□□ -1.28
LIG3-206ENST00000586058 RANBP17Q9H2T7 1088 aaKnown RBP7.03□□□□□ -1.28
LIG3-206ENST00000586058 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.03□□□□□ -1.28
LIG3-206ENST00000586058 BIN2Q9UBW5 565 aaPredicted RBP7.03□□□□□ -1.28
LIG3-206ENST00000586058 CCDC39Q9UFE4 941 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 TCEAL9Q9UHQ7 104 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 PNMA3Q9UL41 463 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 PCDHA7Q9UN72 937 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 PCDHA6Q9UN73 950 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 PCDHA8Q9Y5H6 950 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 MORC2Q9Y6X9 1032 aaPredicted RBP7.03□□□□□ -1.28
LIG3-206ENST00000586058 ARID2Q68CP9 1835 aa7.03□□□□□ -1.28
LIG3-206ENST00000586058 LRRC37A2A6NM11 1700 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 LCTP09848 1927 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 SYCE3A1L190 88 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 USP17L15C9J2P7 530 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 USP17L13C9JLJ4 530 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 USP17L11C9JVI0 530 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 USP17L18D6R9N7 530 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 USP17L22D6RA61 530 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 USP17L17D6RBQ6 530 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 USP17L19D6RCP7 530 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 USP17L20D6RJB6 530 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 GCOM1H8Y6P7 765 aaPredicted RBP7.02□□□□□ -1.29
LIG3-206ENST00000586058 CFBP00751 764 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 OR52Z1P0C646 297 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 POLR2MP0CAP2 368 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 CCDC192P0DO97 292 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 CMA1P23946 247 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 ZNF76P36508 570 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 LONP1P36776 959 aaKnown RBP7.02□□□□□ -1.29
LIG3-206ENST00000586058 PRPHP41219 470 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 SYKP43405 635 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 OAZ1P54368 228 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 ATP2C1P98194 919 aaPredicted RBP7.02□□□□□ -1.29
LIG3-206ENST00000586058 USP17L24Q0WX57 530 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 RRP1BQ14684 758 aaKnown RBP7.02□□□□□ -1.29
LIG3-206ENST00000586058 DTHD1Q6ZMT9 781 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 GADL1Q6ZQY3 521 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 FASTKD5Q7L8L6 764 aaKnown RBP7.02□□□□□ -1.29
LIG3-206ENST00000586058 CEP57L1Q8IYX8 460 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 C2orf69Q8N8R5 385 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 RASGRP4Q8TDF6 673 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 TBCKQ8TEA7 893 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 TNFRSF25Q93038 417 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 CDK5RAP3Q96JB5 506 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 MPHOSPH6Q99547 160 aaKnown RBP7.02□□□□□ -1.29
LIG3-206ENST00000586058 SDF4Q9BRK5 362 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 ANO3Q9BYT9 981 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 GLIS2Q9BZE0 524 aaPredicted RBP7.02□□□□□ -1.29
LIG3-206ENST00000586058 TSPY26PQ9H489 355 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 ELP3Q9H9T3 547 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 DACT1Q9NYF0 836 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 MAP3K20Q9NYL2 800 aaKnown RBP7.02□□□□□ -1.29
LIG3-206ENST00000586058 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.02□□□□□ -1.29
LIG3-206ENST00000586058 USP25Q9UHP3 1055 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 PPP1R9AQ9ULJ8 1098 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 PCDHB6Q9Y5E3 794 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 STK24Q9Y6E0 443 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 MGAMO43451 1857 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 DOCK5Q9H7D0 1870 aa7.02□□□□□ -1.29
LIG3-206ENST00000586058 VWA3AA6NCI4 1184 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms