RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 RIOX1Q9H6W3 641 aa17.69■□□□□ 0.42
CLIP3-202ENST00000585466 ABCB11O95342 1321 aa17.69■□□□□ 0.42
CLIP3-202ENST00000585466 RBM47A0AV96 593 aaKnown RBP17.68■□□□□ 0.42
CLIP3-202ENST00000585466 SH2B2O14492 632 aaPredicted RBP17.68■□□□□ 0.42
CLIP3-202ENST00000585466 MYCNP04198 464 aaPredicted RBP17.68■□□□□ 0.42
CLIP3-202ENST00000585466 SMPD1P17405 629 aa17.68■□□□□ 0.42
CLIP3-202ENST00000585466 CALML3P27482 149 aa17.68■□□□□ 0.42
CLIP3-202ENST00000585466 MAGEA10P43363 369 aaPredicted RBP17.68■□□□□ 0.42
CLIP3-202ENST00000585466 ACLYP53396 1101 aa17.68■□□□□ 0.42
CLIP3-202ENST00000585466 GHRHRQ02643 423 aa17.68■□□□□ 0.42
CLIP3-202ENST00000585466 TRIM60Q495X7 471 aa17.68■□□□□ 0.42
CLIP3-202ENST00000585466 EEPD1Q7L9B9 569 aa17.68■□□□□ 0.42
CLIP3-202ENST00000585466 MTA3Q9BTC8 594 aa17.68■□□□□ 0.42
CLIP3-202ENST00000585466 MAF1Q9H063 256 aa17.68■□□□□ 0.42
CLIP3-202ENST00000585466 PRC1O43663 620 aa17.67■□□□□ 0.42
CLIP3-202ENST00000585466 BMP8BP34820 402 aa17.67■□□□□ 0.42
CLIP3-202ENST00000585466 TNFAIP2Q03169 654 aa17.67■□□□□ 0.42
CLIP3-202ENST00000585466 KCNA10Q16322 511 aa17.67■□□□□ 0.42
CLIP3-202ENST00000585466 FBXO11Q86XK2 927 aa17.67■□□□□ 0.42
CLIP3-202ENST00000585466 RASEFQ8IZ41 740 aa17.67■□□□□ 0.42
CLIP3-202ENST00000585466 SYTL5Q8TDW5 730 aaPredicted RBP17.67■□□□□ 0.42
CLIP3-202ENST00000585466 VAT1LQ9HCJ6 419 aa17.67■□□□□ 0.42
CLIP3-202ENST00000585466 VTA1Q9NP79 307 aa17.67■□□□□ 0.42
CLIP3-202ENST00000585466 ADD3Q9UEY8 706 aaKnown RBP17.67■□□□□ 0.42
CLIP3-202ENST00000585466 KIAA1217Q5T5P2 1943 aa17.66■□□□□ 0.42
CLIP3-202ENST00000585466 MOXD2PA6NHM9 499 aa17.66■□□□□ 0.42
CLIP3-202ENST00000585466 ZBTB5O15062 677 aa17.66■□□□□ 0.42
CLIP3-202ENST00000585466 SART3Q15020 963 aaKnown RBP17.66■□□□□ 0.42
CLIP3-202ENST00000585466 ZNF654Q8IZM8 581 aa17.66■□□□□ 0.42
CLIP3-202ENST00000585466 DNERQ8NFT8 737 aa17.66■□□□□ 0.42
CLIP3-202ENST00000585466 MYL10Q9BUA6 226 aa17.66■□□□□ 0.42
CLIP3-202ENST00000585466 PDLIM7Q9NR12 457 aa17.66■□□□□ 0.42
CLIP3-202ENST00000585466 ATP11BQ9Y2G3 1177 aa17.66■□□□□ 0.42
CLIP3-202ENST00000585466 A0A1W2PPC1 479 aa17.65■□□□□ 0.42
CLIP3-202ENST00000585466 ERICH2A1L162 156 aa17.65■□□□□ 0.42
CLIP3-202ENST00000585466 C6orf222P0C671 652 aaPredicted RBP17.65■□□□□ 0.42
CLIP3-202ENST00000585466 MCM5P33992 734 aa17.65■□□□□ 0.42
CLIP3-202ENST00000585466 TSGA10IPQ3SY00 556 aa17.65■□□□□ 0.42
CLIP3-202ENST00000585466 TAAR1Q96RJ0 339 aa17.65■□□□□ 0.42
CLIP3-202ENST00000585466 PIGSQ96S52 555 aa17.65■□□□□ 0.42
CLIP3-202ENST00000585466 MAP3K14Q99558 947 aa17.65■□□□□ 0.42
CLIP3-202ENST00000585466 AMNQ9BXJ7 453 aa17.65■□□□□ 0.42
CLIP3-202ENST00000585466 TRIM43BA6NCK2 446 aa17.64■□□□□ 0.41
CLIP3-202ENST00000585466 DHX16O60231 1041 aaKnown RBP17.64■□□□□ 0.41
CLIP3-202ENST00000585466 DDAH1O94760 285 aa17.64■□□□□ 0.41
CLIP3-202ENST00000585466 ASGR1P07306 291 aa17.64■□□□□ 0.41
CLIP3-202ENST00000585466 LIFRP42702 1097 aa17.64■□□□□ 0.41
CLIP3-202ENST00000585466 HSD17B4P51659 736 aa17.64■□□□□ 0.41
CLIP3-202ENST00000585466 BEX3Q00994 111 aa17.64■□□□□ 0.41
CLIP3-202ENST00000585466 TLE2Q04725 743 aa17.64■□□□□ 0.41
CLIP3-202ENST00000585466 ADCK5Q3MIX3 580 aa17.64■□□□□ 0.41
CLIP3-202ENST00000585466 IQSEC1Q6DN90 963 aa17.64■□□□□ 0.41
CLIP3-202ENST00000585466 SH3RF1Q7Z6J0 888 aa17.64■□□□□ 0.41
CLIP3-202ENST00000585466 CATIPQ7Z7H3 387 aa17.64■□□□□ 0.41
CLIP3-202ENST00000585466 TLK2Q86UE8 772 aa17.64■□□□□ 0.41
CLIP3-202ENST00000585466 KCNB2Q92953 911 aa17.64■□□□□ 0.41
CLIP3-202ENST00000585466 TRIM43Q96BQ3 446 aaPredicted RBP17.64■□□□□ 0.41
CLIP3-202ENST00000585466 TMEM87BQ96K49 555 aa17.64■□□□□ 0.41
CLIP3-202ENST00000585466 LRRC2Q9BYS8 371 aa17.64■□□□□ 0.41
CLIP3-202ENST00000585466 MRPL11Q9Y3B7 192 aaKnown RBP17.64■□□□□ 0.41
CLIP3-202ENST00000585466 Q9Y3F1 56 aa17.64■□□□□ 0.41
CLIP3-202ENST00000585466 ITGB8P26012 769 aa17.63■□□□□ 0.41
CLIP3-202ENST00000585466 CDK7P50613 346 aa17.63■□□□□ 0.41
CLIP3-202ENST00000585466 EXOSC10Q01780 885 aaKnown RBP17.63■□□□□ 0.41
CLIP3-202ENST00000585466 DUSP28Q4G0W2 176 aa17.63■□□□□ 0.41
CLIP3-202ENST00000585466 ANKRD33Q7Z3H0 272 aa17.63■□□□□ 0.41
CLIP3-202ENST00000585466 SOX1O00570 391 aaPredicted RBP17.62■□□□□ 0.41
CLIP3-202ENST00000585466 MDM2Q00987 491 aaPredicted RBP17.62■□□□□ 0.41
CLIP3-202ENST00000585466 GNASQ5JWF2 1037 aa17.62■□□□□ 0.41
CLIP3-202ENST00000585466 CASC1Q6TDU7 716 aa17.62■□□□□ 0.41
CLIP3-202ENST00000585466 SGMS1Q86VZ5 419 aa17.62■□□□□ 0.41
CLIP3-202ENST00000585466 HOMER1Q86YM7 354 aa17.62■□□□□ 0.41
CLIP3-202ENST00000585466 PCSK9Q8NBP7 692 aaKnown RBP17.62■□□□□ 0.41
CLIP3-202ENST00000585466 SPZ1Q9BXG8 430 aa17.62■□□□□ 0.41
CLIP3-202ENST00000585466 STARD7Q9NQZ5 370 aa17.62■□□□□ 0.41
CLIP3-202ENST00000585466 PCDHA1Q9Y5I3 950 aa17.62■□□□□ 0.41
CLIP3-202ENST00000585466 GRIN2DO15399 1336 aa17.62■□□□□ 0.41
CLIP3-202ENST00000585466 ELP1O95163 1332 aa17.62■□□□□ 0.41
CLIP3-202ENST00000585466 SCN10AQ9Y5Y9 1956 aa17.62■□□□□ 0.41
CLIP3-202ENST00000585466 PNMA6FA0A0J9YX94 578 aa17.61■□□□□ 0.41
CLIP3-202ENST00000585466 DYNC1LI2O43237 492 aaPredicted RBP17.61■□□□□ 0.41
CLIP3-202ENST00000585466 ARIH2O95376 493 aa17.61■□□□□ 0.41
CLIP3-202ENST00000585466 PLEKHA8P1O95397 391 aa17.61■□□□□ 0.41
CLIP3-202ENST00000585466 RXRAP19793 462 aa17.61■□□□□ 0.41
CLIP3-202ENST00000585466 PDE4DQ08499 809 aa17.61■□□□□ 0.41
CLIP3-202ENST00000585466 FSCN1Q16658 493 aaKnown RBP17.61■□□□□ 0.41
CLIP3-202ENST00000585466 MCF2L2Q86YR7 1114 aa17.61■□□□□ 0.41
CLIP3-202ENST00000585466 SLC43A3Q8NBI5 491 aa17.61■□□□□ 0.41
CLIP3-202ENST00000585466 NUP133Q8WUM0 1156 aa17.61■□□□□ 0.41
CLIP3-202ENST00000585466 WDR11Q9BZH6 1224 aa17.61■□□□□ 0.41
CLIP3-202ENST00000585466 SPC25Q9HBM1 224 aa17.61■□□□□ 0.41
CLIP3-202ENST00000585466 SMARCA1P28370 1054 aa17.6■□□□□ 0.41
CLIP3-202ENST00000585466 FAAP100Q0VG06 881 aa17.6■□□□□ 0.41
CLIP3-202ENST00000585466 RNF20Q5VTR2 975 aa17.6■□□□□ 0.41
CLIP3-202ENST00000585466 CCDC62Q6P9F0 684 aa17.6■□□□□ 0.41
CLIP3-202ENST00000585466 CXCL17Q6UXB2 119 aa17.6■□□□□ 0.41
CLIP3-202ENST00000585466 SRBD1Q8N5C6 995 aaKnown RBP17.6■□□□□ 0.41
CLIP3-202ENST00000585466 COPS5Q92905 334 aa17.6■□□□□ 0.41
CLIP3-202ENST00000585466 TCEANC2Q96MN5 208 aa17.6■□□□□ 0.41
CLIP3-202ENST00000585466 GLT1D1Q96MS3 346 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms