RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 ZSCAN10Q96SZ4 725 aaPredicted RBP24■■□□□ 1.43
SHMT1-209ENST00000582653 SEZ6LQ9BYH1 1024 aa24■■□□□ 1.43
SHMT1-209ENST00000582653 LAMA4Q16363 1823 aa24■■□□□ 1.43
SHMT1-209ENST00000582653 DLL1O00548 723 aa23.99■■□□□ 1.43
SHMT1-209ENST00000582653 TLR3O15455 904 aaKnown RBP23.99■■□□□ 1.43
SHMT1-209ENST00000582653 ZEB2O60315 1214 aa23.99■■□□□ 1.43
SHMT1-209ENST00000582653 CD4P01730 458 aa23.99■■□□□ 1.43
SHMT1-209ENST00000582653 CCDC178Q5BJE1 867 aa23.99■■□□□ 1.43
SHMT1-209ENST00000582653 TMEM63BQ5T3F8 832 aa23.99■■□□□ 1.43
SHMT1-209ENST00000582653 GPATCH4Q5T3I0 446 aaKnown RBP23.99■■□□□ 1.43
SHMT1-209ENST00000582653 CXCL17Q6UXB2 119 aa23.99■■□□□ 1.43
SHMT1-209ENST00000582653 FBXO16Q8IX29 292 aaPredicted RBP23.99■■□□□ 1.43
SHMT1-209ENST00000582653 CLEC4DQ8WXI8 215 aa23.99■■□□□ 1.43
SHMT1-209ENST00000582653 ANKS1AQ92625 1134 aa23.99■■□□□ 1.43
SHMT1-209ENST00000582653 PTPDC1A2A3K4 754 aa23.98■■□□□ 1.43
SHMT1-209ENST00000582653 ALDH5A1P51649 535 aaPredicted RBP23.98■■□□□ 1.43
SHMT1-209ENST00000582653 ENAHQ8N8S7 591 aaPredicted RBP23.98■■□□□ 1.43
SHMT1-209ENST00000582653 KAT14Q9H8E8 782 aa23.98■■□□□ 1.43
SHMT1-209ENST00000582653 HSFX4A0A1B0GTS1 333 aaPredicted RBP23.97■■□□□ 1.43
SHMT1-209ENST00000582653 HSFX3A0A1B0GWH4 333 aaPredicted RBP23.97■■□□□ 1.43
SHMT1-209ENST00000582653 TNKSO95271 1327 aa23.97■■□□□ 1.43
SHMT1-209ENST00000582653 CHMLP26374 656 aa23.97■■□□□ 1.43
SHMT1-209ENST00000582653 ITGA7Q13683 1181 aa23.97■■□□□ 1.43
SHMT1-209ENST00000582653 DUSP28Q4G0W2 176 aa23.97■■□□□ 1.43
SHMT1-209ENST00000582653 SLC30A10Q6XR72 485 aa23.97■■□□□ 1.43
SHMT1-209ENST00000582653 RNF207Q6ZRF8 634 aa23.97■■□□□ 1.43
SHMT1-209ENST00000582653 C16orf59Q7L2K0 433 aa23.97■■□□□ 1.43
SHMT1-209ENST00000582653 WDR19Q8NEZ3 1342 aa23.97■■□□□ 1.43
SHMT1-209ENST00000582653 CDX2Q99626 313 aaPredicted RBP23.97■■□□□ 1.43
SHMT1-209ENST00000582653 KRT23Q9C075 422 aa23.97■■□□□ 1.43
SHMT1-209ENST00000582653 GRIN2DO15399 1336 aa23.96■■□□□ 1.43
SHMT1-209ENST00000582653 RBM47A0AV96 593 aaKnown RBP23.96■■□□□ 1.43
SHMT1-209ENST00000582653 CALML3P27482 149 aa23.96■■□□□ 1.43
SHMT1-209ENST00000582653 PTH1RQ03431 593 aa23.96■■□□□ 1.43
SHMT1-209ENST00000582653 PPIGQ13427 754 aaKnown RBP eCLIP23.96■■□□□ 1.433e-6■□□□□ 10.9
SHMT1-209ENST00000582653 TMEM199Q8N511 208 aa23.96■■□□□ 1.43
SHMT1-209ENST00000582653 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.96■■□□□ 1.43
SHMT1-209ENST00000582653 A0A0C4DFX4 3053 aa23.96■■□□□ 1.43
SHMT1-209ENST00000582653 LCTP09848 1927 aa23.96■■□□□ 1.43
SHMT1-209ENST00000582653 RPS6P62753 249 aaKnown RBP23.95■■□□□ 1.42
SHMT1-209ENST00000582653 USH1GQ495M9 461 aa23.95■■□□□ 1.42
SHMT1-209ENST00000582653 RGS22Q8NE09 1264 aa23.95■■□□□ 1.42
SHMT1-209ENST00000582653 WDR11Q9BZH6 1224 aa23.95■■□□□ 1.42
SHMT1-209ENST00000582653 MAF1Q9H063 256 aa23.95■■□□□ 1.42
SHMT1-209ENST00000582653 TTYH1Q9H313 450 aaPredicted RBP23.95■■□□□ 1.42
SHMT1-209ENST00000582653 CNNM2Q9H8M5 875 aa23.95■■□□□ 1.42
SHMT1-209ENST00000582653 TMEM265A0A087WTH1 108 aa23.94■■□□□ 1.42
SHMT1-209ENST00000582653 CSF2RAP15509 400 aa23.94■■□□□ 1.42
SHMT1-209ENST00000582653 TMEM240Q5SV17 173 aa23.94■■□□□ 1.42
SHMT1-209ENST00000582653 CYB5R4Q7L1T6 521 aa23.94■■□□□ 1.42
SHMT1-209ENST00000582653 DNERQ8NFT8 737 aa23.94■■□□□ 1.42
SHMT1-209ENST00000582653 MPHOSPH6Q99547 160 aaKnown RBP23.94■■□□□ 1.42
SHMT1-209ENST00000582653 UBAC1Q9BSL1 405 aa23.94■■□□□ 1.42
SHMT1-209ENST00000582653 RAD50Q92878 1312 aa23.93■■□□□ 1.42
SHMT1-209ENST00000582653 ADGRF4Q8IZF3 695 aa23.93■■□□□ 1.42
SHMT1-209ENST00000582653 RUFY2Q8WXA3 655 aa23.93■■□□□ 1.42
SHMT1-209ENST00000582653 PPP1R12CQ9BZL4 782 aa23.93■■□□□ 1.42
SHMT1-209ENST00000582653 VAT1LQ9HCJ6 419 aa23.93■■□□□ 1.42
SHMT1-209ENST00000582653 LRRC37A2A6NM11 1700 aa23.93■■□□□ 1.42
SHMT1-209ENST00000582653 EDNRBP24530 442 aa23.92■■□□□ 1.42
SHMT1-209ENST00000582653 CDC37Q16543 378 aaPredicted RBP23.92■■□□□ 1.42
SHMT1-209ENST00000582653 B4DLN1 442 aa23.91■■□□□ 1.42
SHMT1-209ENST00000582653 CYP21A2P08686 494 aa23.91■■□□□ 1.42
SHMT1-209ENST00000582653 CYP2C18P33260 490 aa23.91■■□□□ 1.42
SHMT1-209ENST00000582653 MRPL12P52815 198 aaKnown RBP23.91■■□□□ 1.42
SHMT1-209ENST00000582653 PDE4DQ08499 809 aa23.91■■□□□ 1.42
SHMT1-209ENST00000582653 SEC23AQ15436 765 aa23.91■■□□□ 1.42
SHMT1-209ENST00000582653 ASPRV1Q53RT3 343 aa23.91■■□□□ 1.42
SHMT1-209ENST00000582653 IFIT1BQ5T764 474 aaKnown RBP23.91■■□□□ 1.42
SHMT1-209ENST00000582653 RASIP1Q5U651 963 aa23.91■■□□□ 1.42
SHMT1-209ENST00000582653 TBC1D5Q92609 795 aa23.91■■□□□ 1.42
SHMT1-209ENST00000582653 POLR3EQ9NVU0 708 aa23.91■■□□□ 1.42
SHMT1-209ENST00000582653 TAF6LQ9Y6J9 622 aa23.91■■□□□ 1.42
SHMT1-209ENST00000582653 NKRFO15226 690 aaKnown RBP eCLIP23.9■■□□□ 1.42
SHMT1-209ENST00000582653 DHX16O60231 1041 aaKnown RBP23.9■■□□□ 1.42
SHMT1-209ENST00000582653 PARP1P09874 1014 aaKnown RBP23.9■■□□□ 1.42
SHMT1-209ENST00000582653 CPT1AP50416 773 aa23.9■■□□□ 1.42
SHMT1-209ENST00000582653 PSMC6P62333 389 aa23.9■■□□□ 1.42
SHMT1-209ENST00000582653 ZNF365Q70YC5 407 aa23.9■■□□□ 1.42
SHMT1-209ENST00000582653 STAG2Q8N3U4 1231 aa23.9■■□□□ 1.42
SHMT1-209ENST00000582653 TRPV6Q9H1D0 765 aa23.9■■□□□ 1.42
SHMT1-209ENST00000582653 SGSM2O43147 1006 aa23.89■■□□□ 1.41
SHMT1-209ENST00000582653 B4GALT4O60513 344 aa23.89■■□□□ 1.41
SHMT1-209ENST00000582653 ACRP10323 421 aa23.89■■□□□ 1.41
SHMT1-209ENST00000582653 QRICH1Q2TAL8 776 aa23.89■■□□□ 1.41
SHMT1-209ENST00000582653 PSRC1Q6PGN9 363 aaPredicted RBP23.89■■□□□ 1.41
SHMT1-209ENST00000582653 HIPK3Q9H422 1215 aa23.89■■□□□ 1.41
SHMT1-209ENST00000582653 JMJD4Q9H9V9 463 aa23.89■■□□□ 1.41
SHMT1-209ENST00000582653 IL23AQ9NPF7 189 aa23.89■■□□□ 1.41
SHMT1-209ENST00000582653 U3KPZ7 1027 aaPredicted RBP23.89■■□□□ 1.41
SHMT1-209ENST00000582653 PURAQ00577 322 aaKnown RBP23.88■■□□□ 1.41
SHMT1-209ENST00000582653 TRDNQ13061 729 aa23.88■■□□□ 1.41
SHMT1-209ENST00000582653 OR6J1Q8NGC5 347 aa23.88■■□□□ 1.41
SHMT1-209ENST00000582653 SCFD2Q8WU76 684 aa23.88■■□□□ 1.41
SHMT1-209ENST00000582653 MYLIPQ8WY64 445 aa23.88■■□□□ 1.41
SHMT1-209ENST00000582653 CDH23Q9H251 3354 aa23.88■■□□□ 1.41
SHMT1-209ENST00000582653 ABCB11O95342 1321 aa23.87■■□□□ 1.41
SHMT1-209ENST00000582653 FGBP02675 491 aa23.87■■□□□ 1.41
SHMT1-209ENST00000582653 DNAJB2P25686 324 aa23.87■■□□□ 1.41
SHMT1-209ENST00000582653 BRDTQ58F21 947 aaPredicted RBP23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms