RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 TACR1P25103 407 aa9.72□□□□□ -0.85
SS18-214ENST00000580003 GRIA2P42262 883 aa9.72□□□□□ -0.85
SS18-214ENST00000580003 CYP4F3Q08477 520 aa9.72□□□□□ -0.85
SS18-214ENST00000580003 TMEM62Q0P6H9 643 aa9.72□□□□□ -0.85
SS18-214ENST00000580003 OLFML2BQ68BL8 750 aa9.72□□□□□ -0.85
SS18-214ENST00000580003 SPATC1Q76KD6 591 aa9.72□□□□□ -0.85
SS18-214ENST00000580003 TMEM145Q8NBT3 493 aa9.72□□□□□ -0.85
SS18-214ENST00000580003 SLC26A8Q96RN1 970 aa9.72□□□□□ -0.85
SS18-214ENST00000580003 SRPK1Q96SB4 655 aaKnown RBP9.72□□□□□ -0.85
SS18-214ENST00000580003 IER2Q9BTL4 223 aa9.72□□□□□ -0.85
SS18-214ENST00000580003 SPATA9Q9BWV2 254 aa9.72□□□□□ -0.85
SS18-214ENST00000580003 ZNF552Q9H707 407 aaPredicted RBP9.72□□□□□ -0.85
SS18-214ENST00000580003 PFDN2Q9UHV9 154 aa9.72□□□□□ -0.85
SS18-214ENST00000580003 C7orf72A4D263 438 aa9.71□□□□□ -0.86
SS18-214ENST00000580003 ABLIM1O14639 778 aa9.71□□□□□ -0.86
SS18-214ENST00000580003 SSRP1Q08945 709 aaKnown RBP9.71□□□□□ -0.86
SS18-214ENST00000580003 MESP2Q0VG99 397 aa9.71□□□□□ -0.86
SS18-214ENST00000580003 KCNAB2Q13303 367 aa9.71□□□□□ -0.86
SS18-214ENST00000580003 RAB3GAP1Q15042 981 aa9.71□□□□□ -0.86
SS18-214ENST00000580003 PRSS53Q2L4Q9 553 aa9.71□□□□□ -0.86
SS18-214ENST00000580003 ZNF648Q5T619 568 aaPredicted RBP9.71□□□□□ -0.86
SS18-214ENST00000580003 CABP7Q86V35 215 aa9.71□□□□□ -0.86
SS18-214ENST00000580003 PPIL6Q8IXY8 311 aa9.71□□□□□ -0.86
SS18-214ENST00000580003 LZTR1Q8N653 840 aa9.71□□□□□ -0.86
SS18-214ENST00000580003 USP33Q8TEY7 942 aa9.71□□□□□ -0.86
SS18-214ENST00000580003 DIO2Q92813 273 aa9.71□□□□□ -0.86
SS18-214ENST00000580003 MKL1Q969V6 931 aa9.71□□□□□ -0.86
SS18-214ENST00000580003 TNFRSF12AQ9NP84 129 aa9.71□□□□□ -0.86
SS18-214ENST00000580003 SNTG2Q9NY99 539 aa9.71□□□□□ -0.86
SS18-214ENST00000580003 GULP1Q9UBP9 304 aa9.71□□□□□ -0.86
SS18-214ENST00000580003 TRAV20A0A0B4J274 112 aa9.7□□□□□ -0.86
SS18-214ENST00000580003 NUDT19A8MXV4 375 aa9.7□□□□□ -0.86
SS18-214ENST00000580003 PEX10O60683 326 aa9.7□□□□□ -0.86
SS18-214ENST00000580003 CAPNS1P04632 268 aa9.7□□□□□ -0.86
SS18-214ENST00000580003 MAP4K2Q12851 820 aa9.7□□□□□ -0.86
SS18-214ENST00000580003 RASA3Q14644 834 aa9.7□□□□□ -0.86
SS18-214ENST00000580003 ACBD5Q5T8D3 534 aaPredicted RBP9.7□□□□□ -0.86
SS18-214ENST00000580003 TMEM132EQ6IEE7 984 aa9.7□□□□□ -0.86
SS18-214ENST00000580003 KREMEN2Q8NCW0 462 aa9.7□□□□□ -0.86
SS18-214ENST00000580003 OSBPL2Q9H1P3 480 aa9.7□□□□□ -0.86
SS18-214ENST00000580003 KCNK12Q9HB15 430 aa9.7□□□□□ -0.86
SS18-214ENST00000580003 ARHGEF4Q9NR80 690 aa9.7□□□□□ -0.86
SS18-214ENST00000580003 RWDD3Q9Y3V2 267 aa9.7□□□□□ -0.86
SS18-214ENST00000580003 PRODHO43272 600 aa9.69□□□□□ -0.86
SS18-214ENST00000580003 FGFR1P11362 822 aa9.69□□□□□ -0.86
SS18-214ENST00000580003 NR1I3Q14994 352 aa9.69□□□□□ -0.86
SS18-214ENST00000580003 PKN1Q16512 942 aa9.69□□□□□ -0.86
SS18-214ENST00000580003 SYDE1Q6ZW31 735 aaPredicted RBP9.69□□□□□ -0.86
SS18-214ENST00000580003 PPP1R16BQ96T49 567 aa9.69□□□□□ -0.86
SS18-214ENST00000580003 HRKO00198 91 aa9.68□□□□□ -0.86
SS18-214ENST00000580003 MYO1BO43795 1136 aa9.68□□□□□ -0.86
SS18-214ENST00000580003 LTBRP36941 435 aa9.68□□□□□ -0.86
SS18-214ENST00000580003 INF2Q27J81 1249 aa9.68□□□□□ -0.86
SS18-214ENST00000580003 SLC35F1Q5T1Q4 408 aa9.68□□□□□ -0.86
SS18-214ENST00000580003 MBLAC2Q68D91 279 aa9.68□□□□□ -0.86
SS18-214ENST00000580003 NSMFQ6X4W1 530 aa9.68□□□□□ -0.86
SS18-214ENST00000580003 BTG4Q9NY30 223 aa9.68□□□□□ -0.86
SS18-214ENST00000580003 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.68□□□□□ -0.86
SS18-214ENST00000580003 FAM221BA6H8Z2 402 aa9.67□□□□□ -0.86
SS18-214ENST00000580003 SRGAP3O43295 1099 aa9.67□□□□□ -0.86
SS18-214ENST00000580003 DLX3O60479 287 aa9.67□□□□□ -0.86
SS18-214ENST00000580003 CYBBP04839 570 aa9.67□□□□□ -0.86
SS18-214ENST00000580003 PABPC1P11940 636 aaKnown RBP9.67□□□□□ -0.86
SS18-214ENST00000580003 RPL11P62913 178 aaKnown RBP9.67□□□□□ -0.86
SS18-214ENST00000580003 YBX1P67809 324 aaKnown RBP9.67□□□□□ -0.86
SS18-214ENST00000580003 SRSF3P84103 164 aaKnown RBP9.67□□□□□ -0.86
SS18-214ENST00000580003 PAQR3Q6TCH7 311 aa9.67□□□□□ -0.86
SS18-214ENST00000580003 KCNN1Q92952 543 aa9.67□□□□□ -0.86
SS18-214ENST00000580003 IPO9Q96P70 1041 aaKnown RBP9.67□□□□□ -0.86
SS18-214ENST00000580003 CDC6Q99741 560 aa9.67□□□□□ -0.86
SS18-214ENST00000580003 MCOLN1Q9GZU1 580 aa9.67□□□□□ -0.86
SS18-214ENST00000580003 SIRT5Q9NXA8 310 aa9.67□□□□□ -0.86
SS18-214ENST00000580003 TMEFF2Q9UIK5 374 aaPredicted RBP9.67□□□□□ -0.86
SS18-214ENST00000580003 TIMM13Q9Y5L4 95 aaPredicted RBP9.67□□□□□ -0.86
SS18-214ENST00000580003 KDM2BQ8NHM5 1336 aa9.66□□□□□ -0.86
SS18-214ENST00000580003 FUCA1P04066 466 aa9.66□□□□□ -0.86
SS18-214ENST00000580003 DBHP09172 617 aa9.66□□□□□ -0.86
SS18-214ENST00000580003 TMEM253P0C7T8 217 aa9.66□□□□□ -0.86
SS18-214ENST00000580003 GTF2A2P52657 109 aa9.66□□□□□ -0.86
SS18-214ENST00000580003 TESK1Q15569 626 aa9.66□□□□□ -0.86
SS18-214ENST00000580003 NFE2L2Q16236 605 aa9.66□□□□□ -0.86
SS18-214ENST00000580003 CCDC103Q8IW40 242 aa9.66□□□□□ -0.86
SS18-214ENST00000580003 C1orf159Q96HA4 380 aa9.66□□□□□ -0.86
SS18-214ENST00000580003 MARCH2Q9P0N8 246 aa9.66□□□□□ -0.86
SS18-214ENST00000580003 KLHL14Q9P2G3 628 aa9.66□□□□□ -0.86
SS18-214ENST00000580003 DBR1Q9UK59 544 aaKnown RBP9.66□□□□□ -0.86
SS18-214ENST00000580003 MYOCOSA0A1B0GUC4 107 aa9.65□□□□□ -0.86
SS18-214ENST00000580003 DIAPH1O60610 1272 aaKnown RBP9.65□□□□□ -0.86
SS18-214ENST00000580003 PPP1R11O60927 126 aaPredicted RBP9.65□□□□□ -0.86
SS18-214ENST00000580003 VIPR1P32241 457 aa9.65□□□□□ -0.86
SS18-214ENST00000580003 CBX2Q14781 532 aaPredicted RBP9.65□□□□□ -0.86
SS18-214ENST00000580003 DENND5AQ6IQ26 1287 aa9.65□□□□□ -0.86
SS18-214ENST00000580003 RPTNQ6XPR3 784 aa9.65□□□□□ -0.86
SS18-214ENST00000580003 USP53Q70EK8 1073 aa9.65□□□□□ -0.86
SS18-214ENST00000580003 ZBTB38Q8NAP3 1195 aaPredicted RBP9.65□□□□□ -0.86
SS18-214ENST00000580003 BHLHE22Q8NFJ8 381 aaPredicted RBP9.65□□□□□ -0.86
SS18-214ENST00000580003 MTA3Q9BTC8 594 aa9.65□□□□□ -0.86
SS18-214ENST00000580003 KRTAP4-8Q9BYQ9 185 aa9.65□□□□□ -0.86
SS18-214ENST00000580003 TEX51A0A1B0GUA7 166 aa9.64□□□□□ -0.87
SS18-214ENST00000580003 NFIBO00712 420 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms