RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 NUDT12Q9BQG2 462 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 VPS54Q9P1Q0 977 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 SMCHD1A6NHR9 2005 aa9.87□□□□□ -0.83
NUP88-211ENST00000575976 DNAJC25-GNG10A0A024R161 153 aa9.86□□□□□ -0.83
NUP88-211ENST00000575976 SMCO2A6NFE2 343 aa9.86□□□□□ -0.83
NUP88-211ENST00000575976 CFBP00751 764 aa9.86□□□□□ -0.83
NUP88-211ENST00000575976 GNRH1P01148 92 aa9.86□□□□□ -0.83
NUP88-211ENST00000575976 PGK2P07205 417 aa9.86□□□□□ -0.83
NUP88-211ENST00000575976 CYP2B6P20813 491 aa9.86□□□□□ -0.83
NUP88-211ENST00000575976 CALML3P27482 149 aa9.86□□□□□ -0.83
NUP88-211ENST00000575976 FLT3LGP49771 235 aa9.86□□□□□ -0.83
NUP88-211ENST00000575976 FXR1P51114 621 aaKnown RBP eCLIP9.86□□□□□ -0.83
NUP88-211ENST00000575976 RPS6P62753 249 aaKnown RBP9.86□□□□□ -0.83
NUP88-211ENST00000575976 ZNF792Q3KQV3 632 aa9.86□□□□□ -0.83
NUP88-211ENST00000575976 SLC30A10Q6XR72 485 aa9.86□□□□□ -0.83
NUP88-211ENST00000575976 RGS22Q8NE09 1264 aa9.86□□□□□ -0.83
NUP88-211ENST00000575976 NPLOC4Q8TAT6 608 aa9.86□□□□□ -0.83
NUP88-211ENST00000575976 SOCS4Q8WXH5 440 aa9.86□□□□□ -0.83
NUP88-211ENST00000575976 PURBQ96QR8 312 aaKnown RBP9.86□□□□□ -0.83
NUP88-211ENST00000575976 ALG1Q9BT22 464 aa9.86□□□□□ -0.83
NUP88-211ENST00000575976 GJB4Q9NTQ9 266 aa9.86□□□□□ -0.83
NUP88-211ENST00000575976 CYP39A1Q9NYL5 469 aa9.86□□□□□ -0.83
NUP88-211ENST00000575976 SRRDQ9UH36 339 aa9.86□□□□□ -0.83
NUP88-211ENST00000575976 SOWAHBA6NEL2 793 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 POTEB2H3BUK9 544 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 GCOM1H8Y6P7 765 aaPredicted RBP9.85□□□□□ -0.83
NUP88-211ENST00000575976 MEIS2O14770 477 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 ADAMTS3O15072 1205 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 POLR2MP0CAP2 368 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 GJB2P29033 226 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 HOXA13P31271 388 aaPredicted RBP9.85□□□□□ -0.83
NUP88-211ENST00000575976 RGS2P41220 211 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 HSD17B4P51659 736 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 FOSBP53539 338 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 NLRP5P59047 1200 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 HMGN5P82970 282 aaKnown RBP9.85□□□□□ -0.83
NUP88-211ENST00000575976 CNTN2Q02246 1040 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 GHRHRQ02643 423 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 PPP1R18Q6NYC8 613 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 FBXO46Q6PJ61 603 aaPredicted RBP9.85□□□□□ -0.83
NUP88-211ENST00000575976 USP17L6PQ6QN14 398 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 DPP9Q86TI2 863 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 FAM133AQ8N9E0 248 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 FAM184AQ8NB25 1140 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 SYTL5Q8TDW5 730 aaPredicted RBP9.85□□□□□ -0.83
NUP88-211ENST00000575976 WASF1Q92558 559 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 FGD4Q96M96 766 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 PSTPIP2Q9H939 334 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 SH3GLB2Q9NR46 395 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 FOXD4L1Q9NU39 408 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 COL20A1Q9P218 1284 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 KCNJ14Q9UNX9 436 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 SMC3Q9UQE7 1217 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.85□□□□□ -0.83
NUP88-211ENST00000575976 MGAMO43451 1857 aa9.85□□□□□ -0.83
NUP88-211ENST00000575976 PFASO15067 1338 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 MYH6P13533 1939 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 ESYT2A0FGR8 921 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 HOXC6P09630 235 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 MRPL12P52815 198 aaKnown RBP9.84□□□□□ -0.83
NUP88-211ENST00000575976 PRMT2P55345 433 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 IRF5Q13568 498 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 CCL14Q16627 93 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 UBE2SQ16763 222 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 FCHSD1Q86WN1 690 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 SAMD3Q8N6K7 520 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 CCDC148Q8NFR7 591 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 CCDC12Q8WUD4 166 aaPredicted RBP9.84□□□□□ -0.83
NUP88-211ENST00000575976 CUL5Q93034 780 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 INTS4Q96HW7 963 aaKnown RBP9.84□□□□□ -0.83
NUP88-211ENST00000575976 TAAR1Q96RJ0 339 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 MAF1Q9H063 256 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 ZMYND12Q9H0C1 365 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 C6orf50Q9HD87 102 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 RIC8AQ9NPQ8 531 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 TMEM260Q9NX78 707 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 MAP3K20Q9NYL2 800 aaKnown RBP9.84□□□□□ -0.83
NUP88-211ENST00000575976 FLRT1Q9NZU1 646 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 DIS3Q9Y2L1 958 aaKnown RBP9.84□□□□□ -0.83
NUP88-211ENST00000575976 PTPN22Q9Y2R2 807 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 PTCH2Q9Y6C5 1203 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 PLXNB2O15031 1838 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 CUL9Q8IWT3 2517 aa9.84□□□□□ -0.83
NUP88-211ENST00000575976 ASTN1O14525 1302 aa9.83□□□□□ -0.84
NUP88-211ENST00000575976 PIK3CDO00329 1044 aa9.83□□□□□ -0.84
NUP88-211ENST00000575976 XRCC5P13010 732 aaKnown RBP9.83□□□□□ -0.84
NUP88-211ENST00000575976 XBP1P17861 261 aa9.83□□□□□ -0.84
NUP88-211ENST00000575976 GNA11P29992 359 aa9.83□□□□□ -0.84
NUP88-211ENST00000575976 ADCY7P51828 1080 aa9.83□□□□□ -0.84
NUP88-211ENST00000575976 GUCY1B3Q02153 619 aa9.83□□□□□ -0.84
NUP88-211ENST00000575976 NPY5RQ15761 445 aa9.83□□□□□ -0.84
NUP88-211ENST00000575976 SPRYD3Q8NCJ5 442 aa9.83□□□□□ -0.84
NUP88-211ENST00000575976 RAET1EQ8TD07 263 aa9.83□□□□□ -0.84
NUP88-211ENST00000575976 MAML3Q96JK9 1138 aa9.83□□□□□ -0.84
NUP88-211ENST00000575976 APBA2Q99767 749 aa9.83□□□□□ -0.84
NUP88-211ENST00000575976 PHF20Q9BVI0 1012 aa9.83□□□□□ -0.84
NUP88-211ENST00000575976 TSHZ2Q9NRE2 1034 aa9.83□□□□□ -0.84
NUP88-211ENST00000575976 SLC5A4Q9NY91 659 aa9.83□□□□□ -0.84
NUP88-211ENST00000575976 BIN2Q9UBW5 565 aaPredicted RBP9.83□□□□□ -0.84
NUP88-211ENST00000575976 DOCK3Q8IZD9 2030 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms