RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 PRKAG3Q9UGI9 489 aa5.06□□□□□ -1.6
NUP88-209ENST00000574855 EMC9Q9Y3B6 208 aa5.06□□□□□ -1.6
NUP88-209ENST00000574855 KCTD3Q9Y597 815 aa5.06□□□□□ -1.6
NUP88-209ENST00000574855 IRAK3Q9Y616 596 aa5.06□□□□□ -1.6
NUP88-209ENST00000574855 NPHP3-ACAD11A0A0J9YXS1 232 aa5.05□□□□□ -1.6
NUP88-209ENST00000574855 KCNH1O95259 989 aa5.05□□□□□ -1.6
NUP88-209ENST00000574855 CYBBP04839 570 aa5.05□□□□□ -1.6
NUP88-209ENST00000574855 PAMP19021 973 aa5.05□□□□□ -1.6
NUP88-209ENST00000574855 ETFBP38117 255 aa5.05□□□□□ -1.6
NUP88-209ENST00000574855 MAPKAPK2P49137 400 aa5.05□□□□□ -1.6
NUP88-209ENST00000574855 FXNQ16595 210 aa5.05□□□□□ -1.6
NUP88-209ENST00000574855 ZC3H14Q6PJT7 736 aaKnown RBP5.05□□□□□ -1.6
NUP88-209ENST00000574855 C6orf15Q6UXA7 325 aaPredicted RBP5.05□□□□□ -1.6
NUP88-209ENST00000574855 SPOCD1Q6ZMY3 1216 aa5.05□□□□□ -1.6
NUP88-209ENST00000574855 LCNL1Q6ZST4 164 aa5.05□□□□□ -1.6
NUP88-209ENST00000574855 FAM178BQ8IXR5 827 aa5.05□□□□□ -1.6
NUP88-209ENST00000574855 MZB1Q8WU39 189 aa5.05□□□□□ -1.6
NUP88-209ENST00000574855 TINF2Q9BSI4 451 aa5.05□□□□□ -1.6
NUP88-209ENST00000574855 R3HCC1Q9Y3T6 440 aaKnown RBP5.05□□□□□ -1.6
NUP88-209ENST00000574855 SRGAP3O43295 1099 aa5.04□□□□□ -1.6
NUP88-209ENST00000574855 DDAH1O94760 285 aa5.04□□□□□ -1.6
NUP88-209ENST00000574855 DBHP09172 617 aa5.04□□□□□ -1.6
NUP88-209ENST00000574855 FGRP09769 529 aa5.04□□□□□ -1.6
NUP88-209ENST00000574855 DNAJA1P31689 397 aaKnown RBP5.04□□□□□ -1.6
NUP88-209ENST00000574855 EPHB3P54753 998 aa5.04□□□□□ -1.6
NUP88-209ENST00000574855 CABP7Q86V35 215 aa5.04□□□□□ -1.6
NUP88-209ENST00000574855 LDHDQ86WU2 507 aa5.04□□□□□ -1.6
NUP88-209ENST00000574855 TMEM151BQ8IW70 566 aa5.04□□□□□ -1.6
NUP88-209ENST00000574855 SLC43A3Q8NBI5 491 aa5.04□□□□□ -1.6
NUP88-209ENST00000574855 LRP2BPQ9P2M1 347 aa5.04□□□□□ -1.6
NUP88-209ENST00000574855 DBR1Q9UK59 544 aaKnown RBP5.04□□□□□ -1.6
NUP88-209ENST00000574855 F8W031 263 aaPredicted RBP5.03□□□□□ -1.6
NUP88-209ENST00000574855 TACR1P25103 407 aa5.03□□□□□ -1.6
NUP88-209ENST00000574855 CDR1P51861 262 aa5.03□□□□□ -1.6
NUP88-209ENST00000574855 SCRN1Q12765 414 aa5.03□□□□□ -1.6
NUP88-209ENST00000574855 SSPNQ14714 243 aa5.03□□□□□ -1.6
NUP88-209ENST00000574855 TARBP2Q15633 366 aaKnown RBP5.03□□□□□ -1.6
NUP88-209ENST00000574855 PLEKHN1Q494U1 663 aaPredicted RBP5.03□□□□□ -1.6
NUP88-209ENST00000574855 SV2CQ496J9 727 aa5.03□□□□□ -1.6
NUP88-209ENST00000574855 TCERG1LQ5VWI1 586 aa5.03□□□□□ -1.6
NUP88-209ENST00000574855 GTF2IRD2BQ6EKJ0 949 aa5.03□□□□□ -1.6
NUP88-209ENST00000574855 GTF2IRD2Q86UP8 949 aa5.03□□□□□ -1.6
NUP88-209ENST00000574855 CPNE8Q86YQ8 564 aa5.03□□□□□ -1.6
NUP88-209ENST00000574855 MCF2L2Q86YR7 1114 aa5.03□□□□□ -1.6
NUP88-209ENST00000574855 TRIM59Q8IWR1 403 aa5.03□□□□□ -1.6
NUP88-209ENST00000574855 LZTR1Q8N653 840 aa5.03□□□□□ -1.6
NUP88-209ENST00000574855 USP33Q8TEY7 942 aa5.03□□□□□ -1.6
NUP88-209ENST00000574855 COPS5Q92905 334 aa5.03□□□□□ -1.6
NUP88-209ENST00000574855 KRTAP9-8Q9BYQ0 159 aa5.03□□□□□ -1.6
NUP88-209ENST00000574855 ZNF408Q9H9D4 720 aa5.03□□□□□ -1.6
NUP88-209ENST00000574855 GPRC5CQ9NQ84 441 aa5.03□□□□□ -1.6
NUP88-209ENST00000574855 CYP26B1Q9NR63 512 aa5.03□□□□□ -1.6
NUP88-209ENST00000574855 ADAMTS20P59510 1910 aa5.03□□□□□ -1.6
NUP88-209ENST00000574855 IRS4O14654 1257 aaPredicted RBP5.02□□□□□ -1.61
NUP88-209ENST00000574855 NPHS1O60500 1241 aa5.02□□□□□ -1.61
NUP88-209ENST00000574855 PLS3P13797 630 aa5.02□□□□□ -1.61
NUP88-209ENST00000574855 PFKLP17858 780 aa5.02□□□□□ -1.61
NUP88-209ENST00000574855 MRGPRX3Q96LB0 322 aa5.02□□□□□ -1.61
NUP88-209ENST00000574855 GMLQ99445 158 aa5.02□□□□□ -1.61
NUP88-209ENST00000574855 NKX2-4Q9H2Z4 354 aa5.02□□□□□ -1.61
NUP88-209ENST00000574855 CLEC1BQ9P126 229 aa5.02□□□□□ -1.61
NUP88-209ENST00000574855 RWDD3Q9Y3V2 267 aa5.02□□□□□ -1.61
NUP88-209ENST00000574855 PCDHA5Q9Y5H7 936 aa5.02□□□□□ -1.61
NUP88-209ENST00000574855 IRS2Q9Y4H2 1338 aa5.01□□□□□ -1.61
NUP88-209ENST00000574855 ZC3H12DA2A288 527 aaKnown RBP5.01□□□□□ -1.61
NUP88-209ENST00000574855 C7orf72A4D263 438 aa5.01□□□□□ -1.61
NUP88-209ENST00000574855 SUSD5O60279 629 aa5.01□□□□□ -1.61
NUP88-209ENST00000574855 BUB1BO60566 1050 aaPredicted RBP5.01□□□□□ -1.61
NUP88-209ENST00000574855 PPP1R11O60927 126 aaPredicted RBP5.01□□□□□ -1.61
NUP88-209ENST00000574855 ITGAVP06756 1048 aa5.01□□□□□ -1.61
NUP88-209ENST00000574855 GLI4P10075 376 aa5.01□□□□□ -1.61
NUP88-209ENST00000574855 PI3P19957 117 aa5.01□□□□□ -1.61
NUP88-209ENST00000574855 HOXC12P31275 282 aa5.01□□□□□ -1.61
NUP88-209ENST00000574855 NCKAP1LP55160 1127 aa5.01□□□□□ -1.61
NUP88-209ENST00000574855 PRR5P85299 388 aa5.01□□□□□ -1.61
NUP88-209ENST00000574855 ZNF200P98182 395 aaPredicted RBP5.01□□□□□ -1.61
NUP88-209ENST00000574855 IQCEQ6IPM2 695 aa5.01□□□□□ -1.61
NUP88-209ENST00000574855 CNKSR3Q6P9H4 555 aa5.01□□□□□ -1.61
NUP88-209ENST00000574855 EEPD1Q7L9B9 569 aa5.01□□□□□ -1.61
NUP88-209ENST00000574855 IGDCC3Q8IVU1 814 aa5.01□□□□□ -1.61
NUP88-209ENST00000574855 PANK1Q8TE04 598 aa5.01□□□□□ -1.61
NUP88-209ENST00000574855 CCDC140Q96MF4 163 aa5.01□□□□□ -1.61
NUP88-209ENST00000574855 MMP19Q99542 508 aa5.01□□□□□ -1.61
NUP88-209ENST00000574855 EPN3Q9H201 632 aa5.01□□□□□ -1.61
NUP88-209ENST00000574855 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.01□□□□□ -1.61
NUP88-209ENST00000574855 GULP1Q9UBP9 304 aa5.01□□□□□ -1.61
NUP88-209ENST00000574855 NUDT5Q9UKK9 219 aa5.01□□□□□ -1.61
NUP88-209ENST00000574855 B2RBV5 119 aa5□□□□□ -1.61
NUP88-209ENST00000574855 AGRPO00253 132 aa5□□□□□ -1.61
NUP88-209ENST00000574855 THBDP07204 575 aa5□□□□□ -1.61
NUP88-209ENST00000574855 SLC9A5Q14940 896 aa5□□□□□ -1.61
NUP88-209ENST00000574855 MICAL1Q8TDZ2 1067 aa5□□□□□ -1.61
NUP88-209ENST00000574855 PEX11GQ96HA9 241 aa5□□□□□ -1.61
NUP88-209ENST00000574855 MTA3Q9BTC8 594 aa5□□□□□ -1.61
NUP88-209ENST00000574855 LGR4Q9BXB1 951 aa5□□□□□ -1.61
NUP88-209ENST00000574855 IGSF5Q9NSI5 407 aa5□□□□□ -1.61
NUP88-209ENST00000574855 ZBTB7AO95365 584 aa4.99□□□□□ -1.61
NUP88-209ENST00000574855 GJB6O95452 261 aa4.99□□□□□ -1.61
NUP88-209ENST00000574855 CPP00450 1065 aa4.99□□□□□ -1.61
NUP88-209ENST00000574855 FUCA1P04066 466 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms