RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 CYBAP13498 195 aa9.48□□□□□ -0.89
VPS53-214ENST00000572607 BMP8BP34820 402 aa9.48□□□□□ -0.89
VPS53-214ENST00000572607 SART3Q15020 963 aaKnown RBP9.48□□□□□ -0.89
VPS53-214ENST00000572607 ZNF792Q3KQV3 632 aa9.48□□□□□ -0.89
VPS53-214ENST00000572607 BMP2KLQ5H9B9 411 aa9.48□□□□□ -0.89
VPS53-214ENST00000572607 IFIT1BQ5T764 474 aaKnown RBP9.48□□□□□ -0.89
VPS53-214ENST00000572607 Q7L0L9 218 aa9.48□□□□□ -0.89
VPS53-214ENST00000572607 MSL3Q8N5Y2 521 aaKnown RBP9.48□□□□□ -0.89
VPS53-214ENST00000572607 PNMA1Q8ND90 353 aa9.48□□□□□ -0.89
VPS53-214ENST00000572607 TINF2Q9BSI4 451 aa9.48□□□□□ -0.89
VPS53-214ENST00000572607 IL25Q9H293 177 aa9.48□□□□□ -0.89
VPS53-214ENST00000572607 ZSWIM5Q9P217 1185 aa9.48□□□□□ -0.89
VPS53-214ENST00000572607 CCPG1Q9ULG6 757 aa9.48□□□□□ -0.89
VPS53-214ENST00000572607 RIPK3Q9Y572 518 aa9.48□□□□□ -0.89
VPS53-214ENST00000572607 RLFQ13129 1914 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 MYH4Q9Y623 1939 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 SEPT4O43236 478 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 DHX16O60231 1041 aaKnown RBP9.47□□□□□ -0.89
VPS53-214ENST00000572607 ICAM1P05362 532 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 CENPBP07199 599 aaPredicted RBP9.47□□□□□ -0.89
VPS53-214ENST00000572607 SNHG28P0DPA3 235 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 RARBP10826 455 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 SLC16A2P36021 539 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 SNAP25P60880 206 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 PTH1RQ03431 593 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 ZNF543Q08ER8 600 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 ASPRV1Q53RT3 343 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 TTBK2Q6IQ55 1244 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 BTNL9Q6UXG8 535 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 RASGRP2Q7LDG7 609 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 ARRDC4Q8NCT1 418 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 NCOA7Q8NI08 942 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 ANKS1AQ92625 1134 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 AGBL1Q96MI9 1066 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 TRERF1Q96PN7 1200 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 RANBP17Q9H2T7 1088 aaKnown RBP9.47□□□□□ -0.89
VPS53-214ENST00000572607 ZHX1Q9UKY1 873 aaPredicted RBP9.47□□□□□ -0.89
VPS53-214ENST00000572607 PFASO15067 1338 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 SYNGAP1Q96PV0 1343 aa9.47□□□□□ -0.89
VPS53-214ENST00000572607 CDH23Q9H251 3354 aa9.46□□□□□ -0.89
VPS53-214ENST00000572607 KBTBD13C9JR72 458 aa9.46□□□□□ -0.9
VPS53-214ENST00000572607 DNM1LO00429 736 aa9.46□□□□□ -0.9
VPS53-214ENST00000572607 CYP21A2P08686 494 aa9.46□□□□□ -0.9
VPS53-214ENST00000572607 PARP1P09874 1014 aaKnown RBP9.46□□□□□ -0.9
VPS53-214ENST00000572607 AKR1A1P14550 325 aa9.46□□□□□ -0.9
VPS53-214ENST00000572607 PRAMEF19Q5SWL8 479 aa9.46□□□□□ -0.9
VPS53-214ENST00000572607 NSMFQ6X4W1 530 aa9.46□□□□□ -0.9
VPS53-214ENST00000572607 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.46□□□□□ -0.9
VPS53-214ENST00000572607 ENAHQ8N8S7 591 aaPredicted RBP9.46□□□□□ -0.9
VPS53-214ENST00000572607 TRPV1Q8NER1 839 aa9.46□□□□□ -0.9
VPS53-214ENST00000572607 DDX12PQ92771 950 aa9.46□□□□□ -0.9
VPS53-214ENST00000572607 MAP4K1Q92918 833 aa9.46□□□□□ -0.9
VPS53-214ENST00000572607 MPHOSPH6Q99547 160 aaKnown RBP9.46□□□□□ -0.9
VPS53-214ENST00000572607 ESYT1Q9BSJ8 1104 aa9.46□□□□□ -0.9
VPS53-214ENST00000572607 IRX2Q9BZI1 471 aaPredicted RBP9.46□□□□□ -0.9
VPS53-214ENST00000572607 ANO2Q9NQ90 1003 aa9.46□□□□□ -0.9
VPS53-214ENST00000572607 RBM8AQ9Y5S9 174 aaKnown RBP9.46□□□□□ -0.9
VPS53-214ENST00000572607 LTBP2Q14767 1821 aa9.46□□□□□ -0.9
VPS53-214ENST00000572607 ZNF536O15090 1300 aa9.46□□□□□ -0.9
VPS53-214ENST00000572607 LAMA4Q16363 1823 aa9.45□□□□□ -0.9
VPS53-214ENST00000572607 PARP14Q460N5 1801 aa9.45□□□□□ -0.9
VPS53-214ENST00000572607 DNAJC25-GNG10A0A024R161 153 aa9.45□□□□□ -0.9
VPS53-214ENST00000572607 ASB14A6NK59 587 aa9.45□□□□□ -0.9
VPS53-214ENST00000572607 E7EWF7 191 aa9.45□□□□□ -0.9
VPS53-214ENST00000572607 IFIT3O14879 490 aaKnown RBP9.45□□□□□ -0.9
VPS53-214ENST00000572607 CDC45O75419 566 aa9.45□□□□□ -0.9
VPS53-214ENST00000572607 IGHA2P01877 340 aa9.45□□□□□ -0.9
VPS53-214ENST00000572607 GOLGA8HP0CJ92 632 aa9.45□□□□□ -0.9
VPS53-214ENST00000572607 WTAPQ15007 396 aa9.45□□□□□ -0.9
VPS53-214ENST00000572607 LRIT3Q3SXY7 679 aa9.45□□□□□ -0.9
VPS53-214ENST00000572607 RNF20Q5VTR2 975 aa9.45□□□□□ -0.9
VPS53-214ENST00000572607 ANO1Q5XXA6 986 aa9.45□□□□□ -0.9
VPS53-214ENST00000572607 MAMDC4Q6UXC1 1216 aa9.45□□□□□ -0.9
VPS53-214ENST00000572607 A1CFQ9NQ94 594 aaKnown RBP9.45□□□□□ -0.9
VPS53-214ENST00000572607 XPNPEP3Q9NQH7 507 aa9.45□□□□□ -0.9
VPS53-214ENST00000572607 MTMR10Q9NXD2 777 aa9.45□□□□□ -0.9
VPS53-214ENST00000572607 SEPT9Q9UHD8 586 aaPredicted RBP9.45□□□□□ -0.9
VPS53-214ENST00000572607 FAM184BQ9ULE4 1060 aa9.45□□□□□ -0.9
VPS53-214ENST00000572607 ZMYND8Q9ULU4 1186 aaPredicted RBP9.45□□□□□ -0.9
VPS53-214ENST00000572607 WDR19Q8NEZ3 1342 aa9.45□□□□□ -0.9
VPS53-214ENST00000572607 PTPDC1A2A3K4 754 aa9.44□□□□□ -0.9
VPS53-214ENST00000572607 CDC37Q16543 378 aaPredicted RBP9.44□□□□□ -0.9
VPS53-214ENST00000572607 TMEM67Q5HYA8 995 aa9.44□□□□□ -0.9
VPS53-214ENST00000572607 GJC2Q5T442 439 aaPredicted RBP9.44□□□□□ -0.9
VPS53-214ENST00000572607 CYB5R4Q7L1T6 521 aa9.44□□□□□ -0.9
VPS53-214ENST00000572607 ARMCX2Q7L311 632 aa9.44□□□□□ -0.9
VPS53-214ENST00000572607 CATIPQ7Z7H3 387 aa9.44□□□□□ -0.9
VPS53-214ENST00000572607 RNF180Q86T96 592 aa9.44□□□□□ -0.9
VPS53-214ENST00000572607 DEFB123Q8N688 67 aa9.44□□□□□ -0.9
VPS53-214ENST00000572607 COL25A1Q9BXS0 654 aaPredicted RBP9.44□□□□□ -0.9
VPS53-214ENST00000572607 SENP6Q9GZR1 1112 aaPredicted RBP9.44□□□□□ -0.9
VPS53-214ENST00000572607 UBA5Q9GZZ9 404 aa9.44□□□□□ -0.9
VPS53-214ENST00000572607 ABHD16BQ9H3Z7 469 aa9.44□□□□□ -0.9
VPS53-214ENST00000572607 SPC25Q9HBM1 224 aa9.44□□□□□ -0.9
VPS53-214ENST00000572607 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.44□□□□□ -0.9
VPS53-214ENST00000572607 ADD3Q9UEY8 706 aaKnown RBP9.44□□□□□ -0.9
VPS53-214ENST00000572607 STXBP5LQ9Y2K9 1186 aa9.44□□□□□ -0.9
VPS53-214ENST00000572607 MUC3AQ02505 3323 aa9.44□□□□□ -0.9
VPS53-214ENST00000572607 COL11A1P12107 1806 aaPredicted RBP9.43□□□□□ -0.9
VPS53-214ENST00000572607 ABCB11O95342 1321 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms