RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 POLLQ9UGP5 575 aa25.48■■□□□ 1.67
VPS53-211ENST00000571805 EDIL3O43854 480 aa25.48■■□□□ 1.67
VPS53-211ENST00000571805 PDHBP11177 359 aa25.48■■□□□ 1.67
VPS53-211ENST00000571805 PPP1R2P41236 205 aa25.48■■□□□ 1.67
VPS53-211ENST00000571805 TBC1D8BQ0IIM8 1120 aa25.48■■□□□ 1.67
VPS53-211ENST00000571805 TSR1Q2NL82 804 aaKnown RBP25.48■■□□□ 1.67
VPS53-211ENST00000571805 SLF2Q8IX21 1173 aa25.48■■□□□ 1.67
VPS53-211ENST00000571805 RETREG2Q8NC44 543 aa25.48■■□□□ 1.67
VPS53-211ENST00000571805 KIAA0895Q8NCT3 520 aa25.48■■□□□ 1.67
VPS53-211ENST00000571805 NUP58Q9BVL2 599 aa25.48■■□□□ 1.67
VPS53-211ENST00000571805 PSMD14O00487 310 aa25.47■■□□□ 1.67
VPS53-211ENST00000571805 KLK7P49862 253 aa25.47■■□□□ 1.67
VPS53-211ENST00000571805 BEND6Q5SZJ8 279 aaPredicted RBP25.47■■□□□ 1.67
VPS53-211ENST00000571805 ZNF662Q6ZS27 426 aa25.47■■□□□ 1.67
VPS53-211ENST00000571805 ZSCAN29Q8IWY8 852 aaPredicted RBP25.47■■□□□ 1.67
VPS53-211ENST00000571805 LRRC4BQ9NT99 713 aa25.47■■□□□ 1.67
VPS53-211ENST00000571805 BLOC1S4Q9NUP1 217 aa25.47■■□□□ 1.67
VPS53-211ENST00000571805 PODXL2Q9NZ53 605 aa25.47■■□□□ 1.67
VPS53-211ENST00000571805 CTAGE15A4D2H0 777 aa25.47■■□□□ 1.67
VPS53-211ENST00000571805 CTAGE8P0CG41 777 aa25.47■■□□□ 1.67
VPS53-211ENST00000571805 TXKP42681 527 aa25.47■■□□□ 1.67
VPS53-211ENST00000571805 GRB10Q13322 594 aa25.47■■□□□ 1.67
VPS53-211ENST00000571805 CTAGE6Q86UF2 777 aa25.47■■□□□ 1.67
VPS53-211ENST00000571805 FAM114A1Q8IWE2 563 aa25.47■■□□□ 1.67
VPS53-211ENST00000571805 CTAGE4Q8IX94 777 aa25.47■■□□□ 1.67
VPS53-211ENST00000571805 TBC1D16Q8TBP0 767 aa25.47■■□□□ 1.67
VPS53-211ENST00000571805 CALML4Q96GE6 196 aa25.47■■□□□ 1.67
VPS53-211ENST00000571805 RBM17Q96I25 401 aaKnown RBP25.47■■□□□ 1.67
VPS53-211ENST00000571805 PLIN4Q96Q06 1357 aa25.47■■□□□ 1.67
VPS53-211ENST00000571805 hCG_1984214I3L0E3 225 aa25.46■■□□□ 1.67
VPS53-211ENST00000571805 NKRFO15226 690 aaKnown RBP eCLIP25.46■■□□□ 1.67
VPS53-211ENST00000571805 POLR3GO15318 223 aaPredicted RBP25.46■■□□□ 1.67
VPS53-211ENST00000571805 ZNF713Q8N859 430 aaPredicted RBP25.46■■□□□ 1.67
VPS53-211ENST00000571805 TBC1D22AQ8WUA7 517 aa25.46■■□□□ 1.67
VPS53-211ENST00000571805 HPS3Q969F9 1004 aa25.46■■□□□ 1.67
VPS53-211ENST00000571805 SEMA6BQ9H3T3 888 aa25.46■■□□□ 1.67
VPS53-211ENST00000571805 MTMR4Q9NYA4 1195 aa25.46■■□□□ 1.67
VPS53-211ENST00000571805 OAS2P29728 719 aaKnown RBP25.46■■□□□ 1.67
VPS53-211ENST00000571805 CYP2C19P33261 490 aa25.46■■□□□ 1.67
VPS53-211ENST00000571805 ZBED6P86452 979 aa25.46■■□□□ 1.67
VPS53-211ENST00000571805 CNNM4Q6P4Q7 775 aa25.46■■□□□ 1.67
VPS53-211ENST00000571805 PNMA5Q96PV4 448 aa25.46■■□□□ 1.67
VPS53-211ENST00000571805 FRMPD2Q68DX3 1309 aaPredicted RBP25.45■■□□□ 1.67
VPS53-211ENST00000571805 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.45■■□□□ 1.66
VPS53-211ENST00000571805 ADRA2BP18089 450 aa25.45■■□□□ 1.66
VPS53-211ENST00000571805 TRIM21P19474 475 aaKnown RBP25.45■■□□□ 1.66
VPS53-211ENST00000571805 FXR2P51116 673 aaKnown RBP eCLIP25.45■■□□□ 1.66
VPS53-211ENST00000571805 CENPPQ6IPU0 288 aa25.45■■□□□ 1.66
VPS53-211ENST00000571805 TRAPPC11Q7Z392 1133 aa25.45■■□□□ 1.66
VPS53-211ENST00000571805 ZCCHC17Q9NP64 241 aaKnown RBP25.45■■□□□ 1.66
VPS53-211ENST00000571805 USP21Q9UK80 565 aa25.45■■□□□ 1.66
VPS53-211ENST00000571805 TFR2Q9UP52 801 aa25.45■■□□□ 1.66
VPS53-211ENST00000571805 BBOX1O75936 387 aa25.45■■□□□ 1.66
VPS53-211ENST00000571805 GYS1P13807 737 aa25.45■■□□□ 1.66
VPS53-211ENST00000571805 MTIF2P46199 727 aaKnown RBP25.45■■□□□ 1.66
VPS53-211ENST00000571805 SV2BQ7L1I2 683 aa25.45■■□□□ 1.66
VPS53-211ENST00000571805 COA7Q96BR5 231 aa25.45■■□□□ 1.66
VPS53-211ENST00000571805 ERGIC2Q96RQ1 377 aa25.45■■□□□ 1.66
VPS53-211ENST00000571805 NOC4LQ9BVI4 516 aaKnown RBP25.45■■□□□ 1.66
VPS53-211ENST00000571805 LRWD1Q9UFC0 647 aa25.45■■□□□ 1.66
VPS53-211ENST00000571805 DAGLAQ9Y4D2 1042 aa25.45■■□□□ 1.66
VPS53-211ENST00000571805 SERPINB2P05120 415 aa25.44■■□□□ 1.66
VPS53-211ENST00000571805 KRT83P78385 493 aa25.44■■□□□ 1.66
VPS53-211ENST00000571805 GABPAQ06546 454 aa25.44■■□□□ 1.66
VPS53-211ENST00000571805 CALCRLQ16602 461 aa25.44■■□□□ 1.66
VPS53-211ENST00000571805 FIGNQ5HY92 759 aa25.44■■□□□ 1.66
VPS53-211ENST00000571805 MYMKA6NI61 221 aa25.44■■□□□ 1.66
VPS53-211ENST00000571805 SLC37A4O43826 429 aa25.44■■□□□ 1.66
VPS53-211ENST00000571805 SNHG28P0DPA3 235 aa25.44■■□□□ 1.66
VPS53-211ENST00000571805 CCDC122Q5T0U0 273 aa25.44■■□□□ 1.66
VPS53-211ENST00000571805 NCAPH2Q6IBW4 605 aa25.44■■□□□ 1.66
VPS53-211ENST00000571805 NOA1Q8NC60 698 aaKnown RBP25.44■■□□□ 1.66
VPS53-211ENST00000571805 SLC39A2Q9NP94 309 aa25.44■■□□□ 1.66
VPS53-211ENST00000571805 ZKSCAN7Q9P0L1 754 aaPredicted RBP25.44■■□□□ 1.66
VPS53-211ENST00000571805 RHOXF2BP0C7M4 288 aa25.43■■□□□ 1.66
VPS53-211ENST00000571805 ST5P78524 1137 aa25.43■■□□□ 1.66
VPS53-211ENST00000571805 RHOXF2Q9BQY4 288 aa25.43■■□□□ 1.66
VPS53-211ENST00000571805 NHEJ1Q9H9Q4 299 aaPredicted RBP25.43■■□□□ 1.66
VPS53-211ENST00000571805 STK17AQ9UEE5 414 aa25.43■■□□□ 1.66
VPS53-211ENST00000571805 IGKV6D-41A0A0C4DH26 115 aa25.42■■□□□ 1.66
VPS53-211ENST00000571805 A0A1W2PQJ5 194 aa25.42■■□□□ 1.66
VPS53-211ENST00000571805 ADCY7P51828 1080 aa25.42■■□□□ 1.66
VPS53-211ENST00000571805 MCM6Q14566 821 aa25.42■■□□□ 1.66
VPS53-211ENST00000571805 ASPRV1Q53RT3 343 aa25.42■■□□□ 1.66
VPS53-211ENST00000571805 CCDC170Q8IYT3 715 aa25.42■■□□□ 1.66
VPS53-211ENST00000571805 L1RE1Q9UN81 338 aa25.42■■□□□ 1.66
VPS53-211ENST00000571805 RCCD1A6NED2 376 aa25.42■■□□□ 1.66
VPS53-211ENST00000571805 EIF3CLB5ME19 914 aaKnown RBP25.42■■□□□ 1.66
VPS53-211ENST00000571805 TDP2O95551 362 aa25.42■■□□□ 1.66
VPS53-211ENST00000571805 HOXA10P31260 410 aaPredicted RBP25.42■■□□□ 1.66
VPS53-211ENST00000571805 CYLC1P35663 651 aaPredicted RBP25.42■■□□□ 1.66
VPS53-211ENST00000571805 UNC13DQ70J99 1090 aa25.42■■□□□ 1.66
VPS53-211ENST00000571805 EIF3CQ99613 913 aaKnown RBP25.42■■□□□ 1.66
VPS53-211ENST00000571805 ABCB6Q9NP58 842 aa25.42■■□□□ 1.66
VPS53-211ENST00000571805 ZNHIT6Q9NWK9 470 aaKnown RBP25.42■■□□□ 1.66
VPS53-211ENST00000571805 UBR3Q6ZT12 1888 aa25.42■■□□□ 1.66
VPS53-211ENST00000571805 PVALEFA0A1B0GWK0 134 aa25.41■■□□□ 1.66
VPS53-211ENST00000571805 ENC1O14682 589 aa25.41■■□□□ 1.66
VPS53-211ENST00000571805 AKR1B1P15121 316 aa25.41■■□□□ 1.66
VPS53-211ENST00000571805 VSNL1P62760 191 aa25.41■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms