RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 SHCBP1Q8NEM2 672 aa7.15□□□□□ -1.26
VPS53-208ENST00000570650 TOX2Q96NM4 488 aa7.15□□□□□ -1.26
VPS53-208ENST00000570650 EPHX3Q9H6B9 360 aa7.15□□□□□ -1.26
VPS53-208ENST00000570650 RPAP3Q9H6T3 665 aaPredicted RBP7.15□□□□□ -1.26
VPS53-208ENST00000570650 LRP2BPQ9P2M1 347 aa7.15□□□□□ -1.26
VPS53-208ENST00000570650 NRBP1Q9UHY1 535 aa7.15□□□□□ -1.26
VPS53-208ENST00000570650 MSRAQ9UJ68 235 aa7.15□□□□□ -1.26
VPS53-208ENST00000570650 PALD1Q9ULE6 856 aa7.15□□□□□ -1.26
VPS53-208ENST00000570650 PLXNA1Q9UIW2 1896 aa7.15□□□□□ -1.27
VPS53-208ENST00000570650 SMCHD1A6NHR9 2005 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 PGK1P00558 417 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 ERCC3P19447 782 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 ARID4AP29374 1257 aaPredicted RBP7.14□□□□□ -1.27
VPS53-208ENST00000570650 PTGIRP43119 386 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 CTSOP43234 321 aaPredicted RBP7.14□□□□□ -1.27
VPS53-208ENST00000570650 SEMA3FQ13275 785 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 COG2Q14746 738 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 RAB3GAP1Q15042 981 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 TMEM240Q5SV17 173 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 GORABQ5T7V8 394 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 PSRC1Q6PGN9 363 aaPredicted RBP7.14□□□□□ -1.27
VPS53-208ENST00000570650 RNF135Q8IUD6 432 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 ABRAQ8N0Z2 381 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 ACER1Q8TDN7 264 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 NUP133Q8WUM0 1156 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 MAML3Q96JK9 1138 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 ROBO3Q96MS0 1386 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 NEUROD6Q96NK8 337 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 INSM2Q96T92 566 aaPredicted RBP7.14□□□□□ -1.27
VPS53-208ENST00000570650 SPATC1LQ9H0A9 340 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 ALG2Q9H553 416 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 MROH8Q9H579 483 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 STARD7Q9NQZ5 370 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 HOXC10Q9NYD6 342 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 SAP30BPQ9UHR5 308 aaKnown RBP7.14□□□□□ -1.27
VPS53-208ENST00000570650 DNMT3LQ9UJW3 386 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 TBX21Q9UL17 535 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 HDAC5Q9UQL6 1122 aa7.14□□□□□ -1.27
VPS53-208ENST00000570650 MROH7Q68CQ1 1323 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 TTLL8A6PVC2 850 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 PIK3CDO00329 1044 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 MAN1A2O60476 641 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 AKR1A1P14550 325 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 SOX11P35716 441 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 MCAMP43121 646 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 KCNQ1P51787 676 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 TFF2Q03403 129 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 TFCP2Q12800 502 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 ABCB5Q2M3G0 1257 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 SLFNL1Q499Z3 407 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 TATDN1Q6P1N9 297 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 C16orf59Q7L2K0 433 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 ALYREFQ86V81 257 aaKnown RBP7.13□□□□□ -1.27
VPS53-208ENST00000570650 NCAPG2Q86XI2 1143 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 MICALL1Q8N3F8 863 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 TMEM199Q8N511 208 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 MB21D1Q8N884 522 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 MTIF3Q9H2K0 278 aaKnown RBP7.13□□□□□ -1.27
VPS53-208ENST00000570650 NKX2-4Q9H2Z4 354 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 OSBPL3Q9H4L5 887 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 SLC28A3Q9HAS3 691 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 CABP5Q9NP86 173 aa7.13□□□□□ -1.27
VPS53-208ENST00000570650 ZNF521Q96K83 1311 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 FIGNL2A6NMB9 653 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 ERC2O15083 957 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 TRAK2O60296 914 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 ADAMTS4O75173 837 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 UQCRFS1P1P0C7P4 283 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 ACRP10323 421 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 FCER1AP12319 257 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 CSF2RAP15509 400 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 ACLYP53396 1101 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 PLS1Q14651 629 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 CERKLQ49MI3 558 aaPredicted RBP7.12□□□□□ -1.27
VPS53-208ENST00000570650 ZNF365Q70YC5 407 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 SSH1Q8WYL5 1049 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 HERVK_113Q902F9 699 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 TINF2Q9BSI4 451 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 TANGO6Q9C0B7 1094 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 EHD4Q9H223 541 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 SERPINB13Q9UIV8 391 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 YBX2Q9Y2T7 364 aaKnown RBP7.12□□□□□ -1.27
VPS53-208ENST00000570650 CDK5RAP2Q96SN8 1893 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 FOCADQ5VW36 1801 aa7.12□□□□□ -1.27
VPS53-208ENST00000570650 ELP1O95163 1332 aa7.11□□□□□ -1.27
VPS53-208ENST00000570650 A0A0G2JMZ2 1700 aa7.11□□□□□ -1.27
VPS53-208ENST00000570650 IGSF3O75054 1194 aa7.11□□□□□ -1.27
VPS53-208ENST00000570650 ZNF865P0CJ78 1059 aaPredicted RBP7.11□□□□□ -1.27
VPS53-208ENST00000570650 USP5P45974 858 aa7.11□□□□□ -1.27
VPS53-208ENST00000570650 FOXD4L5Q5VV16 416 aaPredicted RBP7.11□□□□□ -1.27
VPS53-208ENST00000570650 ADGRA1Q86SQ6 560 aa7.11□□□□□ -1.27
VPS53-208ENST00000570650 KLHDC9Q8NEP7 349 aa7.11□□□□□ -1.27
VPS53-208ENST00000570650 LENG1Q96BZ8 264 aaPredicted RBP7.11□□□□□ -1.27
VPS53-208ENST00000570650 GLT1D1Q96MS3 346 aa7.11□□□□□ -1.27
VPS53-208ENST00000570650 MMP19Q99542 508 aa7.11□□□□□ -1.27
VPS53-208ENST00000570650 PPP1R12CQ9BZL4 782 aa7.11□□□□□ -1.27
VPS53-208ENST00000570650 IL23AQ9NPF7 189 aa7.11□□□□□ -1.27
VPS53-208ENST00000570650 DOLKQ9UPQ8 538 aa7.11□□□□□ -1.27
VPS53-208ENST00000570650 DIS3Q9Y2L1 958 aaKnown RBP7.11□□□□□ -1.27
VPS53-208ENST00000570650 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms