RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 USP27XA6NNY8 438 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 K7ENM7 598 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 N4BP1O75113 896 aaKnown RBP16.85■□□□□ 0.29
CIITA-204ENST00000570546 PNMA6AP0CW24 399 aaPredicted RBP16.85■□□□□ 0.29
CIITA-204ENST00000570546 CCNE1P24864 410 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 EPHB4P54760 987 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 NSMFQ6X4W1 530 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 FAM178BQ8IXR5 827 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 CACNA2D3Q8IZS8 1091 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 PIGSQ96S52 555 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 LEMD3Q9Y2U8 911 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 PCDHA1Q9Y5I3 950 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 ZNF579Q8NAF0 562 aaKnown RBP16.85■□□□□ 0.29
CIITA-204ENST00000570546 STK17AQ9UEE5 414 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 IQGAP1P46940 1657 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 USP31Q70CQ4 1352 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 CIB2O75838 187 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 MOCS3O95396 460 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 POLR2MP0CAP2 368 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 CFAP157Q5JU67 520 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 SLFN13Q68D06 897 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 ADAT2Q7Z6V5 191 aaKnown RBP16.84■□□□□ 0.29
CIITA-204ENST00000570546 FEZ2Q9UHY8 353 aaPredicted RBP16.84■□□□□ 0.29
CIITA-204ENST00000570546 PTPRMP28827 1452 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 A0A1B0GUA9 196 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 PLCG1P19174 1290 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 GBP1P32455 592 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 ARL6IP4Q66PJ3 421 aaKnown RBP16.84■□□□□ 0.29
CIITA-204ENST00000570546 ZNF354CQ86Y25 554 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 MB21D1Q8N884 522 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 ANKRD42Q8N9B4 389 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 KRT15P19012 456 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 TBC1D8O95759 1140 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 USP17L8P0C7I0 530 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 ICA1Q05084 483 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 CCDC14Q49A88 953 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 FAM102BQ5T8I3 360 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 KCTD16Q68DU8 428 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 TMOD4Q9NZQ9 345 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 FAM184BQ9ULE4 1060 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 AXIN2Q9Y2T1 843 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 RABGAP1Q9Y3P9 1069 aa16.84■□□□□ 0.29
CIITA-204ENST00000570546 NR2F2P24468 414 aa16.83■□□□□ 0.29
CIITA-204ENST00000570546 SUSD4Q5VX71 490 aa16.83■□□□□ 0.29
CIITA-204ENST00000570546 CCT5P48643 541 aa16.83■□□□□ 0.29
CIITA-204ENST00000570546 CYP4A11Q02928 519 aa16.83■□□□□ 0.29
CIITA-204ENST00000570546 MECOMQ03112 1051 aa16.83■□□□□ 0.29
CIITA-204ENST00000570546 HLFQ16534 295 aa16.83■□□□□ 0.29
CIITA-204ENST00000570546 GJA10Q969M2 543 aa16.83■□□□□ 0.29
CIITA-204ENST00000570546 LY9Q9HBG7 655 aa16.83■□□□□ 0.29
CIITA-204ENST00000570546 hCG_1984214I3L0E3 225 aa16.83■□□□□ 0.28
CIITA-204ENST00000570546 PPP1R21Q6ZMI0 780 aa16.83■□□□□ 0.28
CIITA-204ENST00000570546 ZNF713Q8N859 430 aaPredicted RBP16.83■□□□□ 0.28
CIITA-204ENST00000570546 SUPT20HQ8NEM7 779 aa16.83■□□□□ 0.28
CIITA-204ENST00000570546 DYNLL2Q96FJ2 89 aa16.83■□□□□ 0.28
CIITA-204ENST00000570546 TNNI1P19237 187 aa16.83■□□□□ 0.28
CIITA-204ENST00000570546 LIG3P49916 1009 aa16.83■□□□□ 0.28
CIITA-204ENST00000570546 FNBP4Q8N3X1 1017 aaPredicted RBP16.83■□□□□ 0.28
CIITA-204ENST00000570546 ABCB6Q9NP58 842 aa16.83■□□□□ 0.28
CIITA-204ENST00000570546 DISC1Q9NRI5 854 aa16.83■□□□□ 0.28
CIITA-204ENST00000570546 NDC80O14777 642 aa16.83■□□□□ 0.28
CIITA-204ENST00000570546 EIF4A3P38919 411 aaKnown RBP16.83■□□□□ 0.28
CIITA-204ENST00000570546 VPS37BQ9H9H4 285 aa16.83■□□□□ 0.28
CIITA-204ENST00000570546 HEXIM1O94992 359 aaKnown RBP16.82■□□□□ 0.28
CIITA-204ENST00000570546 ZNF131P52739 623 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 CUL4BQ13620 913 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 DOK7Q18PE1 504 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 EPB41L5Q9HCM4 733 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 PCDHA13Q9Y5I0 950 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 PXDNLA1KZ92 1463 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 CDC27P30260 824 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 GPATCH4Q5T3I0 446 aaKnown RBP16.82■□□□□ 0.28
CIITA-204ENST00000570546 TEKT3Q9BXF9 490 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 MRPL11Q9Y3B7 192 aaKnown RBP16.82■□□□□ 0.28
CIITA-204ENST00000570546 JRKLQ9Y4A0 524 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 STX2P32856 288 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 PABPC4Q13310 644 aaKnown RBP eCLIP16.82■□□□□ 0.28
CIITA-204ENST00000570546 TMTC3Q6ZXV5 915 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 OTUD6AQ7L8S5 288 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 CDAN1Q8IWY9 1227 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 GRK7Q8WTQ7 553 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 EXOC4Q96A65 974 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 BRIP1Q9BX63 1249 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 TTLL1O95922 423 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 AFPP02771 609 aaKnown RBP16.82■□□□□ 0.28
CIITA-204ENST00000570546 CXCR5P32302 372 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 FKBP3Q00688 224 aaKnown RBP16.82■□□□□ 0.28
CIITA-204ENST00000570546 CACNB1Q02641 598 aaPredicted RBP16.82■□□□□ 0.28
CIITA-204ENST00000570546 STOX1Q6ZVD7 989 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 LARGE2Q8N3Y3 721 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 SMCR8Q8TEV9 937 aaPredicted RBP16.82■□□□□ 0.28
CIITA-204ENST00000570546 KCNF1Q9H3M0 494 aa16.82■□□□□ 0.28
CIITA-204ENST00000570546 RRP15Q9Y3B9 282 aaKnown RBP16.82■□□□□ 0.28
CIITA-204ENST00000570546 TRIM37O94972 964 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 FOSP01100 380 aaPredicted RBP16.81■□□□□ 0.28
CIITA-204ENST00000570546 PRR29P0C7W0 189 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 LMNB1P20700 586 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 CLNS1AP54105 237 aaKnown RBP16.81■□□□□ 0.28
CIITA-204ENST00000570546 FOXO4P98177 505 aa16.81■□□□□ 0.28
CIITA-204ENST00000570546 CASP8Q14790 479 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms