RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 WDR5P61964 334 aaKnown RBP13.21□□□□□ -0.29
VPS53-207ENST00000570510 PURAQ00577 322 aaKnown RBP13.21□□□□□ -0.29
VPS53-207ENST00000570510 LRRFIP1Q32MZ4 808 aaKnown RBP13.21□□□□□ -0.29
VPS53-207ENST00000570510 TKFCQ3LXA3 575 aa13.21□□□□□ -0.29
VPS53-207ENST00000570510 DUSP28Q4G0W2 176 aa13.21□□□□□ -0.29
VPS53-207ENST00000570510 HSP90AB4PQ58FF6 505 aa13.21□□□□□ -0.29
VPS53-207ENST00000570510 TAPT1Q6NXT6 567 aa13.21□□□□□ -0.29
VPS53-207ENST00000570510 NFRKBQ6P4R8 1299 aa13.21□□□□□ -0.29
VPS53-207ENST00000570510 CTR9Q6PD62 1173 aa13.21□□□□□ -0.29
VPS53-207ENST00000570510 NSMFQ6X4W1 530 aa13.21□□□□□ -0.29
VPS53-207ENST00000570510 ZNF444Q8N0Y2 327 aaPredicted RBP13.21□□□□□ -0.29
VPS53-207ENST00000570510 TMEM57Q8N5G2 664 aa13.21□□□□□ -0.29
VPS53-207ENST00000570510 OR6J1Q8NGC5 347 aa13.21□□□□□ -0.29
VPS53-207ENST00000570510 CHURC1Q8WUH1 139 aa13.21□□□□□ -0.29
VPS53-207ENST00000570510 WDR11Q9BZH6 1224 aa13.21□□□□□ -0.29
VPS53-207ENST00000570510 IL1RAPL2Q9NP60 686 aa13.21□□□□□ -0.29
VPS53-207ENST00000570510 ARPP21Q9UBL0 812 aaPredicted RBP13.21□□□□□ -0.29
VPS53-207ENST00000570510 EXOC6BQ9Y2D4 811 aa13.21□□□□□ -0.29
VPS53-207ENST00000570510 MCM3APO60318 1980 aa13.2□□□□□ -0.3
VPS53-207ENST00000570510 KPNA6O60684 536 aa13.2□□□□□ -0.3
VPS53-207ENST00000570510 ERVK-21P61565 698 aa13.2□□□□□ -0.3
VPS53-207ENST00000570510 FAM117BQ6P1L5 589 aa13.2□□□□□ -0.3
VPS53-207ENST00000570510 HFE2Q6ZVN8 426 aa13.2□□□□□ -0.3
VPS53-207ENST00000570510 TMCO2Q7Z6W1 182 aaPredicted RBP13.2□□□□□ -0.3
VPS53-207ENST00000570510 FTSJ3Q8IY81 847 aaKnown RBP13.2□□□□□ -0.3
VPS53-207ENST00000570510 CLASRPQ8N2M8 674 aaKnown RBP13.2□□□□□ -0.3
VPS53-207ENST00000570510 FBXO22Q8NEZ5 403 aa13.2□□□□□ -0.3
VPS53-207ENST00000570510 PAG1Q9NWQ8 432 aa13.2□□□□□ -0.3
VPS53-207ENST00000570510 ADD3Q9UEY8 706 aaKnown RBP13.2□□□□□ -0.3
VPS53-207ENST00000570510 TNNQ9UQP3 1299 aa13.2□□□□□ -0.3
VPS53-207ENST00000570510 POTEB3A0JP26 581 aa13.19□□□□□ -0.3
VPS53-207ENST00000570510 MINDY4BA8MYZ0 360 aa13.19□□□□□ -0.3
VPS53-207ENST00000570510 TTLL1O95922 423 aa13.19□□□□□ -0.3
VPS53-207ENST00000570510 ADD2P35612 726 aa13.19□□□□□ -0.3
VPS53-207ENST00000570510 FOXK2Q01167 660 aa13.19□□□□□ -0.3
VPS53-207ENST00000570510 PTPN11Q06124 597 aaPredicted RBP13.19□□□□□ -0.3
VPS53-207ENST00000570510 PTGISQ16647 500 aa13.19□□□□□ -0.3
VPS53-207ENST00000570510 ZKSCAN2Q63HK3 967 aa13.19□□□□□ -0.3
VPS53-207ENST00000570510 SLFN13Q68D06 897 aa13.19□□□□□ -0.3
VPS53-207ENST00000570510 ZSCAN25Q6NSZ9 544 aa13.19□□□□□ -0.3
VPS53-207ENST00000570510 POTEBQ6S5H4 581 aa13.19□□□□□ -0.3
VPS53-207ENST00000570510 FAM160B2Q86V87 743 aa13.19□□□□□ -0.3
VPS53-207ENST00000570510 ITPRIPQ8IWB1 547 aa13.19□□□□□ -0.3
VPS53-207ENST00000570510 RPAP2Q8IXW5 612 aaPredicted RBP13.19□□□□□ -0.3
VPS53-207ENST00000570510 CHMP4CQ96CF2 233 aa13.19□□□□□ -0.3
VPS53-207ENST00000570510 MPHOSPH6Q99547 160 aaKnown RBP13.19□□□□□ -0.3
VPS53-207ENST00000570510 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.19□□□□□ -0.3
VPS53-207ENST00000570510 PRKAG3Q9UGI9 489 aa13.19□□□□□ -0.3
VPS53-207ENST00000570510 DDX49Q9Y6V7 483 aaKnown RBP13.19□□□□□ -0.3
VPS53-207ENST00000570510 LINC01553A4QN01 128 aa13.18□□□□□ -0.3
VPS53-207ENST00000570510 EFCAB14O75071 495 aa13.18□□□□□ -0.3
VPS53-207ENST00000570510 GJB5O95377 273 aa13.18□□□□□ -0.3
VPS53-207ENST00000570510 PARNO95453 639 aaKnown RBP13.18□□□□□ -0.3
VPS53-207ENST00000570510 RASA1P20936 1047 aa13.18□□□□□ -0.3
VPS53-207ENST00000570510 SLC1A4P43007 532 aa13.18□□□□□ -0.3
VPS53-207ENST00000570510 PTPN5P54829 565 aa13.18□□□□□ -0.3
VPS53-207ENST00000570510 DEFB103AP81534 67 aa13.18□□□□□ -0.3
VPS53-207ENST00000570510 IKBKEQ14164 716 aa13.18□□□□□ -0.3
VPS53-207ENST00000570510 SLFNL1Q499Z3 407 aa13.18□□□□□ -0.3
VPS53-207ENST00000570510 TIGD5Q53EQ6 642 aa13.18□□□□□ -0.3
VPS53-207ENST00000570510 TMEM63BQ5T3F8 832 aa13.18□□□□□ -0.3
VPS53-207ENST00000570510 CNKSR3Q6P9H4 555 aa13.18□□□□□ -0.3
VPS53-207ENST00000570510 LRRC47Q8N1G4 583 aaKnown RBP13.18□□□□□ -0.3
VPS53-207ENST00000570510 CAGE1Q8TC20 777 aa13.18□□□□□ -0.3
VPS53-207ENST00000570510 AFAP1L1Q8TED9 768 aa13.18□□□□□ -0.3
VPS53-207ENST00000570510 PPP1R13LQ8WUF5 828 aa13.18□□□□□ -0.3
VPS53-207ENST00000570510 PRRX2Q99811 253 aa13.18□□□□□ -0.3
VPS53-207ENST00000570510 CYP39A1Q9NYL5 469 aa13.18□□□□□ -0.3
VPS53-207ENST00000570510 ABHD14A-ACY1A0A1B0GW23 586 aa13.17□□□□□ -0.3
VPS53-207ENST00000570510 SELPP16109 830 aa13.17□□□□□ -0.3
VPS53-207ENST00000570510 HNRNPUQ00839 825 aaKnown RBP eCLIP13.17□□□□□ -0.3
VPS53-207ENST00000570510 PPP2R5BQ15173 497 aa13.17□□□□□ -0.3
VPS53-207ENST00000570510 ADHFE1Q8IWW8 467 aa13.17□□□□□ -0.3
VPS53-207ENST00000570510 GMCL1P1Q8NEA9 526 aa13.17□□□□□ -0.3
VPS53-207ENST00000570510 RHPN1Q8TCX5 695 aa13.17□□□□□ -0.3
VPS53-207ENST00000570510 MRPL38Q96DV4 380 aaKnown RBP13.17□□□□□ -0.3
VPS53-207ENST00000570510 POP1Q99575 1024 aaKnown RBP13.17□□□□□ -0.3
VPS53-207ENST00000570510 BOLA2Q9H3K6 86 aa13.17□□□□□ -0.3
VPS53-207ENST00000570510 CCPG1Q9ULG6 757 aa13.17□□□□□ -0.3
VPS53-207ENST00000570510 INSL6Q9Y581 213 aa13.17□□□□□ -0.3
VPS53-207ENST00000570510 NKRFO15226 690 aaKnown RBP eCLIP13.16□□□□□ -0.3
VPS53-207ENST00000570510 TSPY3P0CV98 308 aa13.16□□□□□ -0.3
VPS53-207ENST00000570510 TSPY8P0CW00 308 aa13.16□□□□□ -0.3
VPS53-207ENST00000570510 ZP2Q05996 745 aa13.16□□□□□ -0.3
VPS53-207ENST00000570510 PDE4DQ08499 809 aa13.16□□□□□ -0.3
VPS53-207ENST00000570510 UBE3CQ15386 1083 aa13.16□□□□□ -0.3
VPS53-207ENST00000570510 LRRC8DQ7L1W4 858 aa13.16□□□□□ -0.3
VPS53-207ENST00000570510 SUGP1Q8IWZ8 645 aaKnown RBP13.16□□□□□ -0.3
VPS53-207ENST00000570510 BANK1Q8NDB2 785 aa13.16□□□□□ -0.3
VPS53-207ENST00000570510 NEK9Q8TD19 979 aa13.16□□□□□ -0.3
VPS53-207ENST00000570510 STAG1Q8WVM7 1258 aa13.16□□□□□ -0.3
VPS53-207ENST00000570510 MKL1Q969V6 931 aa13.16□□□□□ -0.3
VPS53-207ENST00000570510 CEP95Q96GE4 821 aa13.16□□□□□ -0.3
VPS53-207ENST00000570510 PHOX2BQ99453 314 aa13.16□□□□□ -0.3
VPS53-207ENST00000570510 CLDND1Q9NY35 253 aa13.16□□□□□ -0.3
VPS53-207ENST00000570510 MTMR4Q9NYA4 1195 aa13.16□□□□□ -0.3
VPS53-207ENST00000570510 SYNPO2Q9UMS6 1093 aa13.16□□□□□ -0.3
VPS53-207ENST00000570510 WDFY4Q6ZS81 3184 aa13.16□□□□□ -0.3
VPS53-207ENST00000570510 SCN5AQ14524 2016 aa13.16□□□□□ -0.3
VPS53-207ENST00000570510 BRWD1Q9NSI6 2320 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms