RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 FEM1BQ9UK73 627 aa21.69■■□□□ 1.06
CLK3-227ENST00000570296 NOP58Q9Y2X3 529 aaKnown RBP21.69■■□□□ 1.06
CLK3-227ENST00000570296 CYP2D7A0A087X1C5 515 aa21.68■■□□□ 1.06
CLK3-227ENST00000570296 FDX1P10109 184 aa21.68■■□□□ 1.06
CLK3-227ENST00000570296 IRS1P35568 1242 aa21.68■■□□□ 1.06
CLK3-227ENST00000570296 DEFB103AP81534 67 aa21.68■■□□□ 1.06
CLK3-227ENST00000570296 PTPN11Q06124 597 aaPredicted RBP21.68■■□□□ 1.06
CLK3-227ENST00000570296 COL19A1Q14993 1142 aa21.68■■□□□ 1.06
CLK3-227ENST00000570296 PTPROQ16827 1216 aa21.68■■□□□ 1.06
CLK3-227ENST00000570296 NBPF20Q3BBV1 942 aa21.68■■□□□ 1.06
CLK3-227ENST00000570296 ARMT1Q9H993 441 aa21.68■■□□□ 1.06
CLK3-227ENST00000570296 GPHNQ9NQX3 736 aaPredicted RBP21.68■■□□□ 1.06
CLK3-227ENST00000570296 MYL3P08590 195 aa21.67■■□□□ 1.06
CLK3-227ENST00000570296 TMEM63BQ5T3F8 832 aa21.67■■□□□ 1.06
CLK3-227ENST00000570296 KIAA1211Q6ZU35 1233 aa21.67■■□□□ 1.06
CLK3-227ENST00000570296 CCDC155Q8N6L0 562 aa21.67■■□□□ 1.06
CLK3-227ENST00000570296 FBXO22Q8NEZ5 403 aa21.67■■□□□ 1.06
CLK3-227ENST00000570296 POP1Q99575 1024 aaKnown RBP21.67■■□□□ 1.06
CLK3-227ENST00000570296 PRKAB2O43741 272 aa21.66■■□□□ 1.06
CLK3-227ENST00000570296 ATP8B2P98198 1209 aa21.66■■□□□ 1.06
CLK3-227ENST00000570296 TCF15Q12870 199 aa21.66■■□□□ 1.06
CLK3-227ENST00000570296 TKFCQ3LXA3 575 aa21.66■■□□□ 1.06
CLK3-227ENST00000570296 IER5LQ5T953 404 aa21.66■■□□□ 1.06
CLK3-227ENST00000570296 CNKSR3Q6P9H4 555 aa21.66■■□□□ 1.06
CLK3-227ENST00000570296 EEPD1Q7L9B9 569 aa21.66■■□□□ 1.06
CLK3-227ENST00000570296 CAGE1Q8TC20 777 aa21.66■■□□□ 1.06
CLK3-227ENST00000570296 AFAP1L1Q8TED9 768 aa21.66■■□□□ 1.06
CLK3-227ENST00000570296 DDRGK1Q96HY6 314 aa21.66■■□□□ 1.06
CLK3-227ENST00000570296 CRBNQ96SW2 442 aa21.66■■□□□ 1.06
CLK3-227ENST00000570296 RNF146Q9NTX7 359 aa21.66■■□□□ 1.06
CLK3-227ENST00000570296 NOD1Q9Y239 953 aa21.66■■□□□ 1.06
CLK3-227ENST00000570296 FAM186AA6NE01 2351 aa21.65■■□□□ 1.06
CLK3-227ENST00000570296 ABHD14A-ACY1A0A1B0GW23 586 aa21.65■■□□□ 1.06
CLK3-227ENST00000570296 EFCAB14O75071 495 aa21.65■■□□□ 1.06
CLK3-227ENST00000570296 PARNO95453 639 aaKnown RBP21.65■■□□□ 1.06
CLK3-227ENST00000570296 BRDTQ58F21 947 aaPredicted RBP21.65■■□□□ 1.06
CLK3-227ENST00000570296 TRMT2AQ8IZ69 625 aaKnown RBP21.65■■□□□ 1.06
CLK3-227ENST00000570296 MORC4Q8TE76 937 aa21.65■■□□□ 1.06
CLK3-227ENST00000570296 EDAQ92838 391 aa21.65■■□□□ 1.06
CLK3-227ENST00000570296 MUTYHQ9UIF7 546 aa21.65■■□□□ 1.06
CLK3-227ENST00000570296 LCTP09848 1927 aa21.65■■□□□ 1.06
CLK3-227ENST00000570296 KMT2EQ8IZD2 1858 aa21.64■■□□□ 1.06
CLK3-227ENST00000570296 MBD4O95243 580 aa21.64■■□□□ 1.05
CLK3-227ENST00000570296 DDX49Q9Y6V7 483 aaKnown RBP21.64■■□□□ 1.05
CLK3-227ENST00000570296 MYO7AQ13402 2215 aa21.64■■□□□ 1.05
CLK3-227ENST00000570296 MYO15AQ9UKN7 3530 aa21.63■■□□□ 1.05
CLK3-227ENST00000570296 KPNA6O60684 536 aa21.63■■□□□ 1.05
CLK3-227ENST00000570296 BCAR3O75815 825 aa21.63■■□□□ 1.05
CLK3-227ENST00000570296 CXCL10P02778 98 aa21.63■■□□□ 1.05
CLK3-227ENST00000570296 RARSP54136 660 aaKnown RBP21.63■■□□□ 1.05
CLK3-227ENST00000570296 GPNMBQ14956 572 aa21.63■■□□□ 1.05
CLK3-227ENST00000570296 RPAP2Q8IXW5 612 aaPredicted RBP21.63■■□□□ 1.05
CLK3-227ENST00000570296 BANK1Q8NDB2 785 aa21.63■■□□□ 1.05
CLK3-227ENST00000570296 C17orf80Q9BSJ5 609 aa21.63■■□□□ 1.05
CLK3-227ENST00000570296 SYNPO2Q9UMS6 1093 aa21.63■■□□□ 1.05
CLK3-227ENST00000570296 ZBED9Q6R2W3 1325 aa21.62■■□□□ 1.05
CLK3-227ENST00000570296 RAD50Q92878 1312 aa21.62■■□□□ 1.05
CLK3-227ENST00000570296 ANP32CO43423 234 aa21.62■■□□□ 1.05
CLK3-227ENST00000570296 SMAD2Q15796 467 aaKnown RBP21.62■■□□□ 1.05
CLK3-227ENST00000570296 PBXIP1Q96AQ6 731 aa21.62■■□□□ 1.05
CLK3-227ENST00000570296 WDR11Q9BZH6 1224 aa21.62■■□□□ 1.05
CLK3-227ENST00000570296 IRF2BPLQ9H1B7 796 aa21.62■■□□□ 1.05
CLK3-227ENST00000570296 INSL6Q9Y581 213 aa21.62■■□□□ 1.05
CLK3-227ENST00000570296 SELPP16109 830 aa21.61■■□□□ 1.05
CLK3-227ENST00000570296 TCEAL5Q5H9L2 206 aa21.61■■□□□ 1.05
CLK3-227ENST00000570296 EP400NLQ6ZTU2 488 aa21.61■■□□□ 1.05
CLK3-227ENST00000570296 AACSQ86V21 672 aa21.61■■□□□ 1.05
CLK3-227ENST00000570296 RNF135Q8IUD6 432 aa21.61■■□□□ 1.05
CLK3-227ENST00000570296 SUGP1Q8IWZ8 645 aaKnown RBP21.61■■□□□ 1.05
CLK3-227ENST00000570296 OR6J1Q8NGC5 347 aa21.61■■□□□ 1.05
CLK3-227ENST00000570296 SAMD11Q96NU1 681 aa21.61■■□□□ 1.05
CLK3-227ENST00000570296 TRERF1Q96PN7 1200 aa21.61■■□□□ 1.05
CLK3-227ENST00000570296 CYP39A1Q9NYL5 469 aa21.61■■□□□ 1.05
CLK3-227ENST00000570296 CLIP2Q9UDT6 1046 aa21.61■■□□□ 1.05
CLK3-227ENST00000570296 MICAL3Q7RTP6 2002 aa21.61■■□□□ 1.05
CLK3-227ENST00000570296 TMEM221A6NGB7 291 aa21.6■■□□□ 1.05
CLK3-227ENST00000570296 M0R296 226 aa21.6■■□□□ 1.05
CLK3-227ENST00000570296 IPO8O15397 1037 aaKnown RBP21.6■■□□□ 1.05
CLK3-227ENST00000570296 NCK2O43639 380 aa21.6■■□□□ 1.05
CLK3-227ENST00000570296 TRIM27P14373 513 aa21.6■■□□□ 1.05
CLK3-227ENST00000570296 PTGISQ16647 500 aa21.6■■□□□ 1.05
CLK3-227ENST00000570296 CTR9Q6PD62 1173 aa21.6■■□□□ 1.05
CLK3-227ENST00000570296 TRIM67Q6ZTA4 783 aa21.6■■□□□ 1.05
CLK3-227ENST00000570296 LRRC8DQ7L1W4 858 aa21.6■■□□□ 1.05
CLK3-227ENST00000570296 ERMP1Q7Z2K6 904 aa21.6■■□□□ 1.05
CLK3-227ENST00000570296 GMCL1P1Q8NEA9 526 aa21.6■■□□□ 1.05
CLK3-227ENST00000570296 MKL1Q969V6 931 aa21.6■■□□□ 1.05
CLK3-227ENST00000570296 NSUN3Q9H649 340 aaKnown RBP21.6■■□□□ 1.05
CLK3-227ENST00000570296 DCHS1Q96JQ0 3298 aa21.59■■□□□ 1.05
CLK3-227ENST00000570296 RBM47A0AV96 593 aaKnown RBP21.59■■□□□ 1.05
CLK3-227ENST00000570296 GOLIM4O00461 696 aa21.59■■□□□ 1.05
CLK3-227ENST00000570296 RASA1P20936 1047 aa21.59■■□□□ 1.05
CLK3-227ENST00000570296 RBL2Q08999 1139 aa21.59■■□□□ 1.05
CLK3-227ENST00000570296 IKBKEQ14164 716 aa21.59■■□□□ 1.05
CLK3-227ENST00000570296 CLDND1Q9NY35 253 aa21.59■■□□□ 1.05
CLK3-227ENST00000570296 ARPP21Q9UBL0 812 aaPredicted RBP21.59■■□□□ 1.05
CLK3-227ENST00000570296 CACNA1BQ00975 2339 aa21.58■■□□□ 1.05
CLK3-227ENST00000570296 LOC102724159A0A0B4J2E5 919 aa21.58■■□□□ 1.05
CLK3-227ENST00000570296 A6NJR5 290 aa21.58■■□□□ 1.05
CLK3-227ENST00000570296 NKRFO15226 690 aaKnown RBP eCLIP21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms