RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 SYDE2Q5VT97 1194 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 RESP18Q5W5W9 173 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 PIK3AP1Q6ZUJ8 805 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 USP50Q70EL3 339 aaPredicted RBP9.07□□□□□ -0.96
VPS39-213ENST00000570062 HOMER1Q86YM7 354 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 SIAH1Q8IUQ4 282 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 FMR1NBQ8N0W7 255 aaPredicted RBP9.07□□□□□ -0.96
VPS39-213ENST00000570062 ENGASEQ8NFI3 743 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 ZNF516Q92618 1163 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 DCPSQ96C86 337 aaKnown RBP9.07□□□□□ -0.96
VPS39-213ENST00000570062 AK8Q96MA6 479 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 TEPSINQ96N21 525 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 WDR18Q9BV38 432 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 GTPBP4Q9BZE4 634 aaKnown RBP9.07□□□□□ -0.96
VPS39-213ENST00000570062 UBA5Q9GZZ9 404 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 KIAA1683Q9H0B3 1180 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 PSTPIP2Q9H939 334 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 EHMT1Q9H9B1 1298 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 GPCPD1Q9NPB8 672 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 PICK1Q9NRD5 415 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 GJB4Q9NTQ9 266 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 MAP3K20Q9NYL2 800 aaKnown RBP9.07□□□□□ -0.96
VPS39-213ENST00000570062 RNF181Q9P0P0 153 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 ZNF112Q9UJU3 913 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 PCDHA6Q9UN73 950 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 MTMR7Q9Y216 660 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 PCDHA8Q9Y5H6 950 aa9.07□□□□□ -0.96
VPS39-213ENST00000570062 FRMPD2Q68DX3 1309 aaPredicted RBP9.06□□□□□ -0.96
VPS39-213ENST00000570062 MYH1P12882 1939 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 SYCE3A1L190 88 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 PHF20L1A8MW92 1017 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 WDR46O15213 610 aaKnown RBP9.06□□□□□ -0.96
VPS39-213ENST00000570062 RAD21O60216 631 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 PPP1R12BO60237 982 aaPredicted RBP9.06□□□□□ -0.96
VPS39-213ENST00000570062 DTNBO60941 627 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 LIG1P18858 919 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 NF2P35240 595 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 TOB1P50616 345 aaPredicted RBP9.06□□□□□ -0.96
VPS39-213ENST00000570062 APLP1P51693 650 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 USP11P51784 963 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 ATP2C1P98194 919 aaPredicted RBP9.06□□□□□ -0.96
VPS39-213ENST00000570062 NPY5RQ15761 445 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 AXDND1Q5T1B0 1012 aaPredicted RBP9.06□□□□□ -0.96
VPS39-213ENST00000570062 MOXD1Q6UVY6 613 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 DTHD1Q6ZMT9 781 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 NEK8Q86SG6 692 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 PNMA8AQ86V59 439 aaPredicted RBP9.06□□□□□ -0.96
VPS39-213ENST00000570062 FBXO11Q86XK2 927 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 SULF1Q8IWU6 871 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 SCYL3Q8IZE3 742 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 RBM46Q8TBY0 533 aaKnown RBP9.06□□□□□ -0.96
VPS39-213ENST00000570062 CHAMP1Q96JM3 812 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 FEZ1Q99689 392 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 KCNH3Q9ULD8 1083 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 COL4A5P29400 1685 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 SCN9AQ15858 1988 aa9.06□□□□□ -0.96
VPS39-213ENST00000570062 ZNF541Q9H0D2 1346 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 hCG_1642624A0A1W2PR95 340 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 USP17L10C9JJH3 530 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 TMEM232C9JQI7 657 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 NR1I2O75469 434 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 ZNF202O95125 648 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 MYL1P05976 194 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 HOXA7P31268 230 aaPredicted RBP9.05□□□□□ -0.96
VPS39-213ENST00000570062 SNW1Q13573 536 aaKnown RBP9.05□□□□□ -0.96
VPS39-213ENST00000570062 CDC37Q16543 378 aaPredicted RBP9.05□□□□□ -0.96
VPS39-213ENST00000570062 CT47A1Q5JQC4 288 aaPredicted RBP9.05□□□□□ -0.96
VPS39-213ENST00000570062 NOL9Q5SY16 702 aaKnown RBP9.05□□□□□ -0.96
VPS39-213ENST00000570062 ANGEL2Q5VTE6 544 aaKnown RBP9.05□□□□□ -0.96
VPS39-213ENST00000570062 PPP4R3AQ6IN85 833 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 TRAF7Q6Q0C0 670 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 KCTD1Q719H9 257 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 MIGA2Q7L4E1 593 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 KCTD17Q8N5Z5 321 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 IQUBQ8NA54 791 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 PRPF38AQ8NAV1 312 aaKnown RBP9.05□□□□□ -0.96
VPS39-213ENST00000570062 PIBF1Q8WXW3 757 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 GPKOWQ92917 476 aaPredicted RBP eCLIP9.05□□□□□ -0.96
VPS39-213ENST00000570062 CUEDC2Q9H467 287 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 ANO10Q9NW15 660 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 FBXO2Q9UK22 296 aaPredicted RBP9.05□□□□□ -0.96
VPS39-213ENST00000570062 HPSEQ9Y251 543 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 MRPL11Q9Y3B7 192 aaKnown RBP9.05□□□□□ -0.96
VPS39-213ENST00000570062 PCDHB6Q9Y5E3 794 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 PCDHA1Q9Y5I3 950 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 ARFGEF1Q9Y6D6 1849 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 ABCB11O95342 1321 aa9.05□□□□□ -0.96
VPS39-213ENST00000570062 BRCA1P38398 1863 aaKnown RBP9.04□□□□□ -0.96
VPS39-213ENST00000570062 PCNTO95613 3336 aa9.04□□□□□ -0.96
VPS39-213ENST00000570062 FAM196BA6NMK8 535 aa9.04□□□□□ -0.96
VPS39-213ENST00000570062 UBE2Q2LH0YL09 131 aa9.04□□□□□ -0.96
VPS39-213ENST00000570062 PIK3CDO00329 1044 aa9.04□□□□□ -0.96
VPS39-213ENST00000570062 PFKFB1P16118 471 aa9.04□□□□□ -0.96
VPS39-213ENST00000570062 MARCKSP29966 332 aaPredicted RBP9.04□□□□□ -0.96
VPS39-213ENST00000570062 NDUFA8P51970 172 aa9.04□□□□□ -0.96
VPS39-213ENST00000570062 PTGDRQ13258 359 aa9.04□□□□□ -0.96
VPS39-213ENST00000570062 PDIA5Q14554 519 aa9.04□□□□□ -0.96
VPS39-213ENST00000570062 TMEM266Q2M3C6 531 aa9.04□□□□□ -0.96
VPS39-213ENST00000570062 QRICH1Q2TAL8 776 aa9.04□□□□□ -0.96
VPS39-213ENST00000570062 C9orf131Q5VYM1 1079 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms