RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 ME1P48163 572 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 PUS10Q3MIT2 529 aaKnown RBP11.98□□□□□ -0.49
CLK3-226ENST00000569406 CFAP100Q494V2 611 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 TMCO5AQ8N6Q1 288 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 KCNN1Q92952 543 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 FTOQ9C0B1 505 aaKnown RBP eCLIP11.98□□□□□ -0.49
CLK3-226ENST00000569406 N6AMT1Q9Y5N5 214 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 EIF3FO00303 357 aaPredicted RBP11.98□□□□□ -0.49
CLK3-226ENST00000569406 RNF113AO15541 343 aaKnown RBP11.98□□□□□ -0.49
CLK3-226ENST00000569406 ARHGAP6O43182 974 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 PFKFB2O60825 505 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 ANKRD1Q15327 319 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 IMMTQ16891 758 aaKnown RBP11.98□□□□□ -0.49
CLK3-226ENST00000569406 KIAA0753Q2KHM9 967 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 ZNF569Q5MCW4 686 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 PALB2Q86YC2 1186 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 BRF1Q92994 677 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 SLC35B4Q969S0 331 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 DDX27Q96GQ7 796 aaKnown RBP11.98□□□□□ -0.49
CLK3-226ENST00000569406 CCT8L2Q96SF2 557 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 GPCPD1Q9NPB8 672 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 SYNPO2Q9UMS6 1093 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 PHF24Q9UPV7 400 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 TAF1P21675 1872 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 BCORQ6W2J9 1755 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 ATRNO75882 1429 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 SERPINC1P01008 464 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 FDPSP14324 419 aaKnown RBP11.97□□□□□ -0.49
CLK3-226ENST00000569406 EVA1CP58658 441 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 SH2D3CQ8N5H7 860 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 LEO1Q8WVC0 666 aaPredicted RBP11.97□□□□□ -0.49
CLK3-226ENST00000569406 TUBGCP4Q9UGJ1 667 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 LTBP4Q8N2S1 1624 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 AGPSO00116 658 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 MGRN1O60291 552 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 TUBBP07437 444 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 HNRNPCP07910 306 aaKnown RBP eCLIP11.97□□□□□ -0.49
CLK3-226ENST00000569406 IFIT1P09914 478 aaKnown RBP11.97□□□□□ -0.49
CLK3-226ENST00000569406 TOP1P11387 765 aaKnown RBP11.97□□□□□ -0.49
CLK3-226ENST00000569406 HOXD11P31277 338 aaPredicted RBP11.97□□□□□ -0.49
CLK3-226ENST00000569406 LSP1P33241 339 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 ZAP70P43403 619 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 BPIFB4P59827 614 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 ELF3P78545 371 aaPredicted RBP11.97□□□□□ -0.49
CLK3-226ENST00000569406 DRP2Q13474 957 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 TAF11Q15544 211 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 INTS5Q6P9B9 1019 aaKnown RBP11.97□□□□□ -0.49
CLK3-226ENST00000569406 WDR37Q9Y2I8 494 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 THRAP3Q9Y2W1 955 aaKnown RBP11.97□□□□□ -0.49
CLK3-226ENST00000569406 SCTRP47872 440 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 ANTXR2P58335 489 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 KRT32Q14532 448 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 DHX32Q7L7V1 743 aaKnown RBP11.97□□□□□ -0.49
CLK3-226ENST00000569406 LCA5Q86VQ0 697 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 CCDC155Q8N6L0 562 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 DUSP9Q99956 384 aaKnown RBP11.97□□□□□ -0.49
CLK3-226ENST00000569406 PPANQ9NQ55 473 aaKnown RBP11.97□□□□□ -0.49
CLK3-226ENST00000569406 TACC3Q9Y6A5 838 aa11.97□□□□□ -0.49
CLK3-226ENST00000569406 A0A0G2JS52 829 aa11.96□□□□□ -0.49
CLK3-226ENST00000569406 LDHAP00338 332 aaKnown RBP11.96□□□□□ -0.49
CLK3-226ENST00000569406 DMPKQ09013 629 aa11.96□□□□□ -0.49
CLK3-226ENST00000569406 SMUG1Q53HV7 270 aa11.96□□□□□ -0.49
CLK3-226ENST00000569406 BICDL1Q6ZP65 573 aa11.96□□□□□ -0.49
CLK3-226ENST00000569406 CHST3Q7LGC8 479 aa11.96□□□□□ -0.49
CLK3-226ENST00000569406 PTF1AQ7RTS3 328 aa11.96□□□□□ -0.49
CLK3-226ENST00000569406 ZNF34Q8IZ26 560 aa11.96□□□□□ -0.49
CLK3-226ENST00000569406 NDNQ99608 321 aa11.96□□□□□ -0.49
CLK3-226ENST00000569406 ATP8A1Q9Y2Q0 1164 aa11.96□□□□□ -0.49
CLK3-226ENST00000569406 LIN7AO14910 233 aaPredicted RBP11.96□□□□□ -0.5
CLK3-226ENST00000569406 MAP3K12Q12852 859 aa11.96□□□□□ -0.5
CLK3-226ENST00000569406 TSR1Q2NL82 804 aaKnown RBP11.96□□□□□ -0.5
CLK3-226ENST00000569406 FKBP15Q5T1M5 1219 aa11.96□□□□□ -0.5
CLK3-226ENST00000569406 TRIM50Q86XT4 487 aa11.96□□□□□ -0.5
CLK3-226ENST00000569406 USP33Q8TEY7 942 aa11.96□□□□□ -0.5
CLK3-226ENST00000569406 SH3GL2Q99962 352 aa11.96□□□□□ -0.5
CLK3-226ENST00000569406 EPN3Q9H201 632 aa11.96□□□□□ -0.5
CLK3-226ENST00000569406 FBXO9Q9UK97 447 aaPredicted RBP11.96□□□□□ -0.5
CLK3-226ENST00000569406 HPS5Q9UPZ3 1129 aa11.96□□□□□ -0.5
CLK3-226ENST00000569406 FGFR2P21802 821 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 PABPC4Q13310 644 aaKnown RBP eCLIP11.95□□□□□ -0.5
CLK3-226ENST00000569406 NLRP14Q86W24 1093 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 AGAP11Q8TF27 550 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 ABTB1Q969K4 478 aaPredicted RBP11.95□□□□□ -0.5
CLK3-226ENST00000569406 SELENOOQ9BVL4 669 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 OSBPL7Q9BZF2 842 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 TAOK3Q9H2K8 898 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 NCOA5Q9HCD5 579 aaKnown RBP11.95□□□□□ -0.5
CLK3-226ENST00000569406 SLC5A4Q9NY91 659 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 BARX2Q9UMQ3 279 aaPredicted RBP11.95□□□□□ -0.5
CLK3-226ENST00000569406 ABCC12Q96J65 1359 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 TCRBV5S4A2TA0A5A2 114 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 ABL1P00519 1130 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 ITGA6P23229 1130 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 PDIA3P30101 505 aaKnown RBP11.95□□□□□ -0.5
CLK3-226ENST00000569406 PCK1P35558 622 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 CTSWP56202 376 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 ZNF394Q53GI3 561 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 ANKRD20A8PQ5CZ79 823 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 CNBD1Q8NA66 436 aa11.95□□□□□ -0.5
CLK3-226ENST00000569406 SNRNP27Q8WVK2 155 aaKnown RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms