RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 PPP1R13LQ8WUF5 828 aa13.63□□□□□ -0.23
CDH3-208ENST00000569036 TSHZ2Q9NRE2 1034 aa13.63□□□□□ -0.23
CDH3-208ENST00000569036 CEP250Q9BV73 2442 aa13.63□□□□□ -0.23
CDH3-208ENST00000569036 H3BNC9 293 aa13.62□□□□□ -0.23
CDH3-208ENST00000569036 NCK2O43639 380 aa13.62□□□□□ -0.23
CDH3-208ENST00000569036 POLR3DP05423 398 aaPredicted RBP13.62□□□□□ -0.23
CDH3-208ENST00000569036 AKR1B1P15121 316 aa13.62□□□□□ -0.23
CDH3-208ENST00000569036 SLC4A3P48751 1232 aa13.62□□□□□ -0.23
CDH3-208ENST00000569036 PURAQ00577 322 aaKnown RBP13.62□□□□□ -0.23
CDH3-208ENST00000569036 CNTN2Q02246 1040 aa13.62□□□□□ -0.23
CDH3-208ENST00000569036 LRRFIP1Q32MZ4 808 aaKnown RBP13.62□□□□□ -0.23
CDH3-208ENST00000569036 PDGFCQ9NRA1 345 aa13.62□□□□□ -0.23
CDH3-208ENST00000569036 Q9Y3F1 56 aa13.62□□□□□ -0.23
CDH3-208ENST00000569036 USP24Q9UPU5 2620 aa13.61□□□□□ -0.23
CDH3-208ENST00000569036 LOC730098B7Z3J9 87 aa13.61□□□□□ -0.23
CDH3-208ENST00000569036 IGSF3O75054 1194 aa13.61□□□□□ -0.23
CDH3-208ENST00000569036 TBX10O75333 385 aa13.61□□□□□ -0.23
CDH3-208ENST00000569036 GPM6BQ13491 265 aa13.61□□□□□ -0.23
CDH3-208ENST00000569036 NBPF20Q3BBV1 942 aa13.61□□□□□ -0.23
CDH3-208ENST00000569036 SLF1Q9BQI6 1058 aa13.61□□□□□ -0.23
CDH3-208ENST00000569036 POLR3EQ9NVU0 708 aa13.61□□□□□ -0.23
CDH3-208ENST00000569036 INSL6Q9Y581 213 aa13.61□□□□□ -0.23
CDH3-208ENST00000569036 DDX49Q9Y6V7 483 aaKnown RBP13.61□□□□□ -0.23
CDH3-208ENST00000569036 RALGAPA2Q2PPJ7 1873 aa13.61□□□□□ -0.23
CDH3-208ENST00000569036 ABHD14A-ACY1A0A1B0GW23 586 aa13.6□□□□□ -0.23
CDH3-208ENST00000569036 ATP2A1O14983 1001 aa13.6□□□□□ -0.23
CDH3-208ENST00000569036 PDGFBP01127 241 aaPredicted RBP13.6□□□□□ -0.23
CDH3-208ENST00000569036 HYAL1Q12794 435 aa13.6□□□□□ -0.23
CDH3-208ENST00000569036 CBX2Q14781 532 aaPredicted RBP13.6□□□□□ -0.23
CDH3-208ENST00000569036 CPXCR1Q8N123 301 aa13.6□□□□□ -0.23
CDH3-208ENST00000569036 FAM133AQ8N9E0 248 aa13.6□□□□□ -0.23
CDH3-208ENST00000569036 SP7Q8TDD2 431 aaPredicted RBP13.6□□□□□ -0.23
CDH3-208ENST00000569036 AFAP1L1Q8TED9 768 aa13.6□□□□□ -0.23
CDH3-208ENST00000569036 SAMD11Q96NU1 681 aa13.6□□□□□ -0.23
CDH3-208ENST00000569036 PRKRIP1Q9H875 184 aaPredicted RBP13.6□□□□□ -0.23
CDH3-208ENST00000569036 CD207Q9UJ71 328 aa13.6□□□□□ -0.23
CDH3-208ENST00000569036 RBAK-RBAKDNI3L0D1 243 aa13.59□□□□□ -0.23
CDH3-208ENST00000569036 CXCL10P02778 98 aa13.59□□□□□ -0.23
CDH3-208ENST00000569036 MYL3P08590 195 aa13.59□□□□□ -0.23
CDH3-208ENST00000569036 EEF2P13639 858 aaKnown RBP13.59□□□□□ -0.23
CDH3-208ENST00000569036 ZAP70P43403 619 aa13.59□□□□□ -0.23
CDH3-208ENST00000569036 HTRA4P83105 476 aaPredicted RBP13.59□□□□□ -0.23
CDH3-208ENST00000569036 MKRN4PQ13434 485 aaPredicted RBP13.59□□□□□ -0.23
CDH3-208ENST00000569036 TTC39AQ5SRH9 613 aa13.59□□□□□ -0.23
CDH3-208ENST00000569036 MCTP2Q6DN12 878 aa13.59□□□□□ -0.23
CDH3-208ENST00000569036 IQSEC1Q6DN90 963 aa13.59□□□□□ -0.23
CDH3-208ENST00000569036 TAPT1Q6NXT6 567 aa13.59□□□□□ -0.23
CDH3-208ENST00000569036 NFRKBQ6P4R8 1299 aa13.59□□□□□ -0.23
CDH3-208ENST00000569036 FBXO16Q8IX29 292 aaPredicted RBP13.59□□□□□ -0.23
CDH3-208ENST00000569036 MTG1Q9BT17 334 aaPredicted RBP13.59□□□□□ -0.23
CDH3-208ENST00000569036 GOPCQ9HD26 462 aa13.59□□□□□ -0.23
CDH3-208ENST00000569036 FBXO40Q9UH90 709 aa13.59□□□□□ -0.23
CDH3-208ENST00000569036 SALL2Q9Y467 1007 aaPredicted RBP13.59□□□□□ -0.23
CDH3-208ENST00000569036 SPTBN2O15020 2390 aa13.59□□□□□ -0.23
CDH3-208ENST00000569036 ASB14A6NK59 587 aa13.58□□□□□ -0.24
CDH3-208ENST00000569036 RAD21O60216 631 aa13.58□□□□□ -0.24
CDH3-208ENST00000569036 NBNO60934 754 aa13.58□□□□□ -0.24
CDH3-208ENST00000569036 EFCAB14O75071 495 aa13.58□□□□□ -0.24
CDH3-208ENST00000569036 LRRC8DQ7L1W4 858 aa13.58□□□□□ -0.24
CDH3-208ENST00000569036 EEPD1Q7L9B9 569 aa13.58□□□□□ -0.24
CDH3-208ENST00000569036 CCDC155Q8N6L0 562 aa13.58□□□□□ -0.24
CDH3-208ENST00000569036 CHST13Q8NET6 341 aa13.58□□□□□ -0.24
CDH3-208ENST00000569036 CAGE1Q8TC20 777 aa13.58□□□□□ -0.24
CDH3-208ENST00000569036 NUP88Q99567 741 aaPredicted RBP13.58□□□□□ -0.24
CDH3-208ENST00000569036 RAVER2Q9HCJ3 691 aaKnown RBP13.58□□□□□ -0.24
CDH3-208ENST00000569036 MCM9Q9NXL9 1143 aa13.58□□□□□ -0.24
CDH3-208ENST00000569036 NOD1Q9Y239 953 aa13.58□□□□□ -0.24
CDH3-208ENST00000569036 LCTP09848 1927 aa13.57□□□□□ -0.24
CDH3-208ENST00000569036 IDH1O75874 414 aaKnown RBP13.57□□□□□ -0.24
CDH3-208ENST00000569036 NEFLP07196 543 aa13.57□□□□□ -0.24
CDH3-208ENST00000569036 CYP2D6P10635 497 aa13.57□□□□□ -0.24
CDH3-208ENST00000569036 SELPP16109 830 aa13.57□□□□□ -0.24
CDH3-208ENST00000569036 DDX10Q13206 875 aaKnown RBP13.57□□□□□ -0.24
CDH3-208ENST00000569036 COL9A2Q14055 689 aaPredicted RBP13.57□□□□□ -0.24
CDH3-208ENST00000569036 PUM1Q14671 1186 aaKnown RBP eCLIP13.57□□□□□ -0.24
CDH3-208ENST00000569036 TMEM192Q8IY95 271 aa13.57□□□□□ -0.24
CDH3-208ENST00000569036 DYNLL2Q96FJ2 89 aa13.57□□□□□ -0.24
CDH3-208ENST00000569036 CTAGE1Q96RT6 745 aa13.57□□□□□ -0.24
CDH3-208ENST00000569036 RIOK1Q9BRS2 568 aaKnown RBP13.57□□□□□ -0.24
CDH3-208ENST00000569036 SWAP70Q9UH65 585 aa13.57□□□□□ -0.24
CDH3-208ENST00000569036 LINC01565O15544 149 aa13.56□□□□□ -0.24
CDH3-208ENST00000569036 SRGAP3O43295 1099 aa13.56□□□□□ -0.24
CDH3-208ENST00000569036 ZBED4O75132 1171 aa13.56□□□□□ -0.24
CDH3-208ENST00000569036 EYA4O95677 639 aa13.56□□□□□ -0.24
CDH3-208ENST00000569036 GTF2F1P35269 517 aaKnown RBP eCLIP13.56□□□□□ -0.24
CDH3-208ENST00000569036 CPT1AP50416 773 aa13.56□□□□□ -0.24
CDH3-208ENST00000569036 PTPN11Q06124 597 aaPredicted RBP13.56□□□□□ -0.24
CDH3-208ENST00000569036 IKBKEQ14164 716 aa13.56□□□□□ -0.24
CDH3-208ENST00000569036 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.56□□□□□ -0.24
CDH3-208ENST00000569036 FBXO11Q86XK2 927 aa13.56□□□□□ -0.24
CDH3-208ENST00000569036 TMEM105Q8N8V8 129 aa13.56□□□□□ -0.24
CDH3-208ENST00000569036 MSLNLQ96KJ4 702 aa13.56□□□□□ -0.24
CDH3-208ENST00000569036 RIPOR3Q96MK2 946 aa13.56□□□□□ -0.24
CDH3-208ENST00000569036 GPHNQ9NQX3 736 aaPredicted RBP13.56□□□□□ -0.24
CDH3-208ENST00000569036 HOMER2Q9NSB8 354 aa13.56□□□□□ -0.24
CDH3-208ENST00000569036 ANKRD11Q6UB99 2663 aaPredicted RBP13.55□□□□□ -0.24
CDH3-208ENST00000569036 PARNO95453 639 aaKnown RBP13.55□□□□□ -0.24
CDH3-208ENST00000569036 PTGISQ16647 500 aa13.55□□□□□ -0.24
CDH3-208ENST00000569036 PTPN21Q16825 1174 aa13.55□□□□□ -0.24
CDH3-208ENST00000569036 ST3GAL2Q16842 350 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms