RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 MRPL12P52815 198 aaKnown RBP25.35■■□□□ 1.65
CLN3-234ENST00000568472 STK3Q13188 491 aa25.35■■□□□ 1.65
CLN3-234ENST00000568472 MAP3K21Q5TCX8 1036 aa25.35■■□□□ 1.65
CLN3-234ENST00000568472 DNERQ8NFT8 737 aa25.35■■□□□ 1.65
CLN3-234ENST00000568472 ZSCAN31Q96LW9 406 aaPredicted RBP25.35■■□□□ 1.65
CLN3-234ENST00000568472 MPHOSPH6Q99547 160 aaKnown RBP25.35■■□□□ 1.65
CLN3-234ENST00000568472 FLRT1Q9NZU1 646 aa25.35■■□□□ 1.65
CLN3-234ENST00000568472 CNTN2Q02246 1040 aa25.34■■□□□ 1.65
CLN3-234ENST00000568472 RPTORQ8N122 1335 aa25.34■■□□□ 1.65
CLN3-234ENST00000568472 GCOM1H8Y6P7 765 aaPredicted RBP25.33■■□□□ 1.65
CLN3-234ENST00000568472 CFBP00751 764 aa25.33■■□□□ 1.65
CLN3-234ENST00000568472 POLR2MP0CAP2 368 aa25.33■■□□□ 1.65
CLN3-234ENST00000568472 CAPN2P17655 700 aa25.33■■□□□ 1.65
CLN3-234ENST00000568472 CALML3P27482 149 aa25.33■■□□□ 1.65
CLN3-234ENST00000568472 HSD17B4P51659 736 aa25.33■■□□□ 1.65
CLN3-234ENST00000568472 PFKFB3Q16875 520 aaPredicted RBP25.33■■□□□ 1.65
CLN3-234ENST00000568472 PPP1R18Q6NYC8 613 aa25.33■■□□□ 1.65
CLN3-234ENST00000568472 HEATR3Q7Z4Q2 680 aa25.33■■□□□ 1.65
CLN3-234ENST00000568472 HMX1Q9NP08 348 aaPredicted RBP25.33■■□□□ 1.65
CLN3-234ENST00000568472 hCG_1642624A0A1W2PR95 340 aa25.32■■□□□ 1.64
CLN3-234ENST00000568472 SOWAHBA6NEL2 793 aa25.32■■□□□ 1.64
CLN3-234ENST00000568472 OPLAHO14841 1288 aa25.32■■□□□ 1.64
CLN3-234ENST00000568472 SCG2P13521 617 aa25.32■■□□□ 1.64
CLN3-234ENST00000568472 PRKAR2AP13861 404 aaKnown RBP25.32■■□□□ 1.64
CLN3-234ENST00000568472 MCM2P49736 904 aa25.32■■□□□ 1.64
CLN3-234ENST00000568472 CACNB2Q08289 660 aaPredicted RBP25.32■■□□□ 1.64
CLN3-234ENST00000568472 SSRP1Q08945 709 aaKnown RBP25.32■■□□□ 1.64
CLN3-234ENST00000568472 SCRN1Q12765 414 aa25.32■■□□□ 1.64
CLN3-234ENST00000568472 ME3Q16798 604 aa25.32■■□□□ 1.64
CLN3-234ENST00000568472 SLC30A10Q6XR72 485 aa25.32■■□□□ 1.64
CLN3-234ENST00000568472 TMEM106CQ9BVX2 250 aa25.32■■□□□ 1.64
CLN3-234ENST00000568472 GLT8D2Q9H1C3 349 aa25.32■■□□□ 1.64
CLN3-234ENST00000568472 BARHL2Q9NY43 387 aa25.32■■□□□ 1.64
CLN3-234ENST00000568472 CNPY2Q9Y2B0 182 aa25.32■■□□□ 1.64
CLN3-234ENST00000568472 CCL5P13501 91 aa25.31■■□□□ 1.64
CLN3-234ENST00000568472 CYP2C19P33261 490 aa25.31■■□□□ 1.64
CLN3-234ENST00000568472 SYTL5Q8TDW5 730 aaPredicted RBP25.31■■□□□ 1.64
CLN3-234ENST00000568472 CCDC12Q8WUD4 166 aaPredicted RBP25.31■■□□□ 1.64
CLN3-234ENST00000568472 CUL5Q93034 780 aa25.31■■□□□ 1.64
CLN3-234ENST00000568472 PHKBQ93100 1093 aa25.31■■□□□ 1.64
CLN3-234ENST00000568472 GTF3C6Q969F1 213 aa25.31■■□□□ 1.64
CLN3-234ENST00000568472 FGD4Q96M96 766 aa25.31■■□□□ 1.64
CLN3-234ENST00000568472 SLC26A6Q9BXS9 759 aa25.31■■□□□ 1.64
CLN3-234ENST00000568472 PSTPIP2Q9H939 334 aa25.31■■□□□ 1.64
CLN3-234ENST00000568472 SH2B1Q9NRF2 756 aaPredicted RBP25.31■■□□□ 1.64
CLN3-234ENST00000568472 PIK3CDO00329 1044 aa25.3■■□□□ 1.64
CLN3-234ENST00000568472 NOL8Q76FK4 1167 aaKnown RBP25.3■■□□□ 1.64
CLN3-234ENST00000568472 FAM177A1Q8N128 213 aaPredicted RBP25.3■■□□□ 1.64
CLN3-234ENST00000568472 NSUN6Q8TEA1 469 aaKnown RBP25.3■■□□□ 1.64
CLN3-234ENST00000568472 TBC1D5Q92609 795 aa25.3■■□□□ 1.64
CLN3-234ENST00000568472 RNF208Q9H0X6 261 aa25.3■■□□□ 1.64
CLN3-234ENST00000568472 DEXIO95424 95 aa25.29■■□□□ 1.64
CLN3-234ENST00000568472 NAPAP54920 295 aa25.29■■□□□ 1.64
CLN3-234ENST00000568472 TRIM32Q13049 653 aa25.29■■□□□ 1.64
CLN3-234ENST00000568472 WWC2Q6AWC2 1192 aa25.29■■□□□ 1.64
CLN3-234ENST00000568472 MORC4Q8TE76 937 aa25.29■■□□□ 1.64
CLN3-234ENST00000568472 IWS1Q96ST2 819 aa25.29■■□□□ 1.64
CLN3-234ENST00000568472 ABHD16BQ9H3Z7 469 aa25.29■■□□□ 1.64
CLN3-234ENST00000568472 HTTP42858 3142 aa25.28■■□□□ 1.64
CLN3-234ENST00000568472 CCDC85CA6NKD9 419 aa25.28■■□□□ 1.64
CLN3-234ENST00000568472 GJB1P08034 283 aa25.28■■□□□ 1.64
CLN3-234ENST00000568472 ALDH5A1P51649 535 aaPredicted RBP25.28■■□□□ 1.64
CLN3-234ENST00000568472 MTFR1Q15390 333 aa25.28■■□□□ 1.64
CLN3-234ENST00000568472 ARMCX2Q7L311 632 aa25.28■■□□□ 1.64
CLN3-234ENST00000568472 GPKOWQ92917 476 aaPredicted RBP eCLIP25.28■■□□□ 1.64
CLN3-234ENST00000568472 RMDN3Q96TC7 470 aa25.28■■□□□ 1.64
CLN3-234ENST00000568472 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.28■■□□□ 1.64
CLN3-234ENST00000568472 UNC93B1Q9H1C4 597 aa25.28■■□□□ 1.64
CLN3-234ENST00000568472 PAK6Q9NQU5 681 aaPredicted RBP25.28■■□□□ 1.64
CLN3-234ENST00000568472 SH3GLB2Q9NR46 395 aa25.28■■□□□ 1.64
CLN3-234ENST00000568472 CDKN2AIPQ9NXV6 580 aaPredicted RBP25.28■■□□□ 1.64
CLN3-234ENST00000568472 BAZ2BQ9UIF8 2168 aaKnown RBP25.27■■□□□ 1.64
CLN3-234ENST00000568472 STXBP3O00186 592 aa25.27■■□□□ 1.64
CLN3-234ENST00000568472 MSCO60682 206 aa25.27■■□□□ 1.64
CLN3-234ENST00000568472 SNAI1O95863 264 aaPredicted RBP25.27■■□□□ 1.64
CLN3-234ENST00000568472 CYBAP13498 195 aa25.27■■□□□ 1.64
CLN3-234ENST00000568472 PKN1Q16512 942 aa25.27■■□□□ 1.64
CLN3-234ENST00000568472 STK36Q9NRP7 1315 aa25.27■■□□□ 1.64
CLN3-234ENST00000568472 ZNFX1Q9P2E3 1918 aaKnown RBP25.27■■□□□ 1.64
CLN3-234ENST00000568472 NECAB1Q8N987 351 aa25.26■■□□□ 1.63
CLN3-234ENST00000568472 CCDC148Q8NFR7 591 aa25.26■■□□□ 1.63
CLN3-234ENST00000568472 SMARCC2Q8TAQ2 1214 aa25.26■■□□□ 1.63
CLN3-234ENST00000568472 WASF1Q92558 559 aa25.26■■□□□ 1.63
CLN3-234ENST00000568472 RIC8AQ9NPQ8 531 aa25.26■■□□□ 1.63
CLN3-234ENST00000568472 ASTN1O14525 1302 aa25.26■■□□□ 1.63
CLN3-234ENST00000568472 ESYT2A0FGR8 921 aa25.25■■□□□ 1.63
CLN3-234ENST00000568472 SEPT4O43236 478 aa25.25■■□□□ 1.63
CLN3-234ENST00000568472 EDNRBP24530 442 aa25.25■■□□□ 1.63
CLN3-234ENST00000568472 HOXA13P31271 388 aaPredicted RBP25.25■■□□□ 1.63
CLN3-234ENST00000568472 PDE4DQ08499 809 aa25.25■■□□□ 1.63
CLN3-234ENST00000568472 ACVR2BQ13705 512 aa25.25■■□□□ 1.63
CLN3-234ENST00000568472 ARHGEF16Q5VV41 709 aa25.25■■□□□ 1.63
CLN3-234ENST00000568472 MCTP2Q6DN12 878 aa25.25■■□□□ 1.63
CLN3-234ENST00000568472 PURBQ96QR8 312 aaKnown RBP25.25■■□□□ 1.63
CLN3-234ENST00000568472 TAAR1Q96RJ0 339 aa25.25■■□□□ 1.63
CLN3-234ENST00000568472 LLPHQ9BRT6 129 aaKnown RBP25.25■■□□□ 1.63
CLN3-234ENST00000568472 COL20A1Q9P218 1284 aa25.25■■□□□ 1.63
CLN3-234ENST00000568472 MYH6P13533 1939 aa25.25■■□□□ 1.63
CLN3-234ENST00000568472 SMCHD1A6NHR9 2005 aa25.24■■□□□ 1.63
CLN3-234ENST00000568472 SMCO2A6NFE2 343 aa25.24■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms