RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 DSCC1Q9BVC3 393 aa18.87■□□□□ 0.61
CLN3-229ENST00000567963 LAMA4Q16363 1823 aa18.87■□□□□ 0.61
CLN3-229ENST00000567963 KDM4AO75164 1064 aa18.86■□□□□ 0.61
CLN3-229ENST00000567963 GOLGA8HP0CJ92 632 aa18.86■□□□□ 0.61
CLN3-229ENST00000567963 CALML3P27482 149 aa18.86■□□□□ 0.61
CLN3-229ENST00000567963 ITGA7Q13683 1181 aa18.86■□□□□ 0.61
CLN3-229ENST00000567963 DUSP28Q4G0W2 176 aa18.86■□□□□ 0.61
CLN3-229ENST00000567963 CCDC178Q5BJE1 867 aa18.86■□□□□ 0.61
CLN3-229ENST00000567963 RNF207Q6ZRF8 634 aa18.86■□□□□ 0.61
CLN3-229ENST00000567963 WDR19Q8NEZ3 1342 aa18.86■□□□□ 0.61
CLN3-229ENST00000567963 DLL1O00548 723 aa18.85■□□□□ 0.61
CLN3-229ENST00000567963 SLC30A10Q6XR72 485 aa18.85■□□□□ 0.61
CLN3-229ENST00000567963 C16orf59Q7L2K0 433 aa18.85■□□□□ 0.61
CLN3-229ENST00000567963 PNMA1Q8ND90 353 aa18.85■□□□□ 0.61
CLN3-229ENST00000567963 ANKS1AQ92625 1134 aa18.85■□□□□ 0.61
CLN3-229ENST00000567963 CDX2Q99626 313 aaPredicted RBP18.85■□□□□ 0.61
CLN3-229ENST00000567963 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.85■□□□□ 0.613e-6■□□□□ 10.1
CLN3-229ENST00000567963 WDR11Q9BZH6 1224 aa18.85■□□□□ 0.61
CLN3-229ENST00000567963 UBA5Q9GZZ9 404 aa18.85■□□□□ 0.61
CLN3-229ENST00000567963 TTYH1Q9H313 450 aaPredicted RBP18.85■□□□□ 0.61
CLN3-229ENST00000567963 GRIN2DO15399 1336 aa18.85■□□□□ 0.61
CLN3-229ENST00000567963 RBM47A0AV96 593 aaKnown RBP18.84■□□□□ 0.61
CLN3-229ENST00000567963 B4E1Z4 1266 aa18.84■□□□□ 0.61
CLN3-229ENST00000567963 CSF2RAP15509 400 aa18.84■□□□□ 0.61
CLN3-229ENST00000567963 RPS6P62753 249 aaKnown RBP18.84■□□□□ 0.61
CLN3-229ENST00000567963 PPIGQ13427 754 aaKnown RBP eCLIP18.84■□□□□ 0.616e-7■■□□□ 11.8
CLN3-229ENST00000567963 IMMTQ16891 758 aaKnown RBP18.84■□□□□ 0.61
CLN3-229ENST00000567963 TMEM199Q8N511 208 aa18.84■□□□□ 0.61
CLN3-229ENST00000567963 ZSCAN10Q96SZ4 725 aaPredicted RBP18.84■□□□□ 0.61
CLN3-229ENST00000567963 SEZ6LQ9BYH1 1024 aa18.84■□□□□ 0.61
CLN3-229ENST00000567963 PPP1R12CQ9BZL4 782 aa18.84■□□□□ 0.61
CLN3-229ENST00000567963 CPVLQ9H3G5 476 aa18.84■□□□□ 0.61
CLN3-229ENST00000567963 ZSWIM5Q9P217 1185 aa18.84■□□□□ 0.61
CLN3-229ENST00000567963 CTNNA3Q9UI47 895 aa18.84■□□□□ 0.61
CLN3-229ENST00000567963 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.84■□□□□ 0.61
CLN3-229ENST00000567963 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.84■□□□□ 0.61
CLN3-229ENST00000567963 DNERQ8NFT8 737 aa18.84■□□□□ 0.61
CLN3-229ENST00000567963 KAT14Q9H8E8 782 aa18.84■□□□□ 0.61
CLN3-229ENST00000567963 USH1GQ495M9 461 aa18.83■□□□□ 0.6
CLN3-229ENST00000567963 TMEM240Q5SV17 173 aa18.83■□□□□ 0.6
CLN3-229ENST00000567963 ENAHQ8N8S7 591 aaPredicted RBP18.83■□□□□ 0.6
CLN3-229ENST00000567963 RGS22Q8NE09 1264 aa18.83■□□□□ 0.6
CLN3-229ENST00000567963 SUPT16HQ9Y5B9 1047 aaKnown RBP18.83■□□□□ 0.6
CLN3-229ENST00000567963 TMEM265A0A087WTH1 108 aa18.82■□□□□ 0.6
CLN3-229ENST00000567963 EDNRBP24530 442 aa18.82■□□□□ 0.6
CLN3-229ENST00000567963 CYP2C18P33260 490 aa18.82■□□□□ 0.6
CLN3-229ENST00000567963 PSMC6P62333 389 aa18.82■□□□□ 0.6
CLN3-229ENST00000567963 PDE4DQ08499 809 aa18.82■□□□□ 0.6
CLN3-229ENST00000567963 ADGRF4Q8IZF3 695 aa18.82■□□□□ 0.6
CLN3-229ENST00000567963 MPHOSPH6Q99547 160 aaKnown RBP18.82■□□□□ 0.6
CLN3-229ENST00000567963 KRT23Q9C075 422 aa18.82■□□□□ 0.6
CLN3-229ENST00000567963 IL25Q9H293 177 aa18.82■□□□□ 0.6
CLN3-229ENST00000567963 PRUNE2Q8WUY3 3088 aa18.82■□□□□ 0.6
CLN3-229ENST00000567963 B4GALT4O60513 344 aa18.81■□□□□ 0.6
CLN3-229ENST00000567963 PDE4AP27815 886 aa18.81■□□□□ 0.6
CLN3-229ENST00000567963 ASPRV1Q53RT3 343 aa18.81■□□□□ 0.6
CLN3-229ENST00000567963 MAF1Q9H063 256 aa18.81■□□□□ 0.6
CLN3-229ENST00000567963 TRPV6Q9H1D0 765 aa18.81■□□□□ 0.6
CLN3-229ENST00000567963 HIPK3Q9H422 1215 aa18.81■□□□□ 0.6
CLN3-229ENST00000567963 CNNM2Q9H8M5 875 aa18.81■□□□□ 0.6
CLN3-229ENST00000567963 TNKSO95271 1327 aa18.81■□□□□ 0.6
CLN3-229ENST00000567963 B4DLN1 442 aa18.8■□□□□ 0.6
CLN3-229ENST00000567963 ACRP10323 421 aa18.8■□□□□ 0.6
CLN3-229ENST00000567963 CPT1AP50416 773 aa18.8■□□□□ 0.6
CLN3-229ENST00000567963 MRPL12P52815 198 aaKnown RBP18.8■□□□□ 0.6
CLN3-229ENST00000567963 PURAQ00577 322 aaKnown RBP18.8■□□□□ 0.6
CLN3-229ENST00000567963 CDC37Q16543 378 aaPredicted RBP18.8■□□□□ 0.6
CLN3-229ENST00000567963 RASIP1Q5U651 963 aa18.8■□□□□ 0.6
CLN3-229ENST00000567963 ZNF365Q70YC5 407 aa18.8■□□□□ 0.6
CLN3-229ENST00000567963 POLR3EQ9NVU0 708 aa18.8■□□□□ 0.6
CLN3-229ENST00000567963 NKRFO15226 690 aaKnown RBP eCLIP18.79■□□□□ 0.6
CLN3-229ENST00000567963 GSPT1P15170 499 aaKnown RBP18.79■□□□□ 0.6
CLN3-229ENST00000567963 DNAJB2P25686 324 aa18.79■□□□□ 0.6
CLN3-229ENST00000567963 TTC22Q5TAA0 569 aa18.79■□□□□ 0.6
CLN3-229ENST00000567963 PSRC1Q6PGN9 363 aaPredicted RBP18.79■□□□□ 0.6
CLN3-229ENST00000567963 OR6J1Q8NGC5 347 aa18.79■□□□□ 0.6
CLN3-229ENST00000567963 SCFD2Q8WU76 684 aa18.79■□□□□ 0.6
CLN3-229ENST00000567963 MYLIPQ8WY64 445 aa18.79■□□□□ 0.6
CLN3-229ENST00000567963 TBC1D5Q92609 795 aa18.79■□□□□ 0.6
CLN3-229ENST00000567963 IL23AQ9NPF7 189 aa18.79■□□□□ 0.6
CLN3-229ENST00000567963 ABCB11O95342 1321 aa18.79■□□□□ 0.6
CLN3-229ENST00000567963 UMODL1Q5DID0 1318 aa18.79■□□□□ 0.6
CLN3-229ENST00000567963 PARP1P09874 1014 aaKnown RBP18.78■□□□□ 0.6
CLN3-229ENST00000567963 PPP2R5BQ15173 497 aa18.78■□□□□ 0.6
CLN3-229ENST00000567963 UBAC1Q9BSL1 405 aa18.78■□□□□ 0.6
CLN3-229ENST00000567963 NOC4LQ9BVI4 516 aaKnown RBP18.78■□□□□ 0.6
CLN3-229ENST00000567963 ALDH8A1Q9H2A2 487 aaPredicted RBP18.78■□□□□ 0.6
CLN3-229ENST00000567963 MYL3P08590 195 aa18.77■□□□□ 0.6
CLN3-229ENST00000567963 TXNP10599 105 aaKnown RBP18.77■□□□□ 0.6
CLN3-229ENST00000567963 QRICH1Q2TAL8 776 aa18.77■□□□□ 0.6
CLN3-229ENST00000567963 BRDTQ58F21 947 aaPredicted RBP18.77■□□□□ 0.6
CLN3-229ENST00000567963 IFIT1BQ5T764 474 aaKnown RBP18.77■□□□□ 0.6
CLN3-229ENST00000567963 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.77■□□□□ 0.6
CLN3-229ENST00000567963 COPS5Q92905 334 aa18.77■□□□□ 0.6
CLN3-229ENST00000567963 JMJD4Q9H9V9 463 aa18.77■□□□□ 0.6
CLN3-229ENST00000567963 VAT1LQ9HCJ6 419 aa18.77■□□□□ 0.6
CLN3-229ENST00000567963 GPHNQ9NQX3 736 aaPredicted RBP18.77■□□□□ 0.6
CLN3-229ENST00000567963 VCANP13611 3396 aa18.77■□□□□ 0.6
CLN3-229ENST00000567963 MYH6P13533 1939 aa18.77■□□□□ 0.59
CLN3-229ENST00000567963 A6NJR5 290 aa18.77■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms