RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 TULP2O00295 520 aa14.86□□□□□ -0.03
VPS4A-204ENST00000566354 GTPBP6O43824 516 aaPredicted RBP14.86□□□□□ -0.03
VPS4A-204ENST00000566354 RBM5P52756 815 aaKnown RBP eCLIP14.86□□□□□ -0.03
VPS4A-204ENST00000566354 PAK1Q13153 545 aa14.86□□□□□ -0.03
VPS4A-204ENST00000566354 TMTC3Q6ZXV5 915 aa14.86□□□□□ -0.03
VPS4A-204ENST00000566354 CERS3Q8IU89 383 aa14.86□□□□□ -0.03
VPS4A-204ENST00000566354 ZDHHC15Q96MV8 337 aa14.86□□□□□ -0.03
VPS4A-204ENST00000566354 USP40Q9NVE5 1235 aa14.86□□□□□ -0.03
VPS4A-204ENST00000566354 RMND1Q9NWS8 449 aa14.86□□□□□ -0.03
VPS4A-204ENST00000566354 ADAM21Q9UKJ8 722 aa14.86□□□□□ -0.03
VPS4A-204ENST00000566354 FLT1P17948 1338 aa14.85□□□□□ -0.03
VPS4A-204ENST00000566354 COPB1P53618 953 aaKnown RBP14.85□□□□□ -0.03
VPS4A-204ENST00000566354 NBPF20Q3BBV1 942 aa14.85□□□□□ -0.03
VPS4A-204ENST00000566354 TCP11X2Q5H9J9 407 aa14.85□□□□□ -0.03
VPS4A-204ENST00000566354 CDC42EP5Q6NZY7 148 aa14.85□□□□□ -0.03
VPS4A-204ENST00000566354 PDXDC2PQ6P474 469 aa14.85□□□□□ -0.03
VPS4A-204ENST00000566354 ACRBPQ8NEB7 543 aa14.85□□□□□ -0.03
VPS4A-204ENST00000566354 STAMQ92783 540 aa14.85□□□□□ -0.03
VPS4A-204ENST00000566354 GMLQ99445 158 aa14.85□□□□□ -0.03
VPS4A-204ENST00000566354 NUP88Q99567 741 aaPredicted RBP14.85□□□□□ -0.03
VPS4A-204ENST00000566354 ARPP21Q9UBL0 812 aaPredicted RBP14.85□□□□□ -0.03
VPS4A-204ENST00000566354 FOCADQ5VW36 1801 aa14.85□□□□□ -0.03
VPS4A-204ENST00000566354 CTAGE15A4D2H0 777 aa14.84□□□□□ -0.03
VPS4A-204ENST00000566354 CTAGE8P0CG41 777 aa14.84□□□□□ -0.03
VPS4A-204ENST00000566354 ERVK-24P63145 666 aa14.84□□□□□ -0.03
VPS4A-204ENST00000566354 PICALMQ13492 652 aa14.84□□□□□ -0.03
VPS4A-204ENST00000566354 SBK1Q52WX2 424 aa14.84□□□□□ -0.03
VPS4A-204ENST00000566354 ZNF658Q5TYW1 1059 aaPredicted RBP14.84□□□□□ -0.03
VPS4A-204ENST00000566354 CTAGE6Q86UF2 777 aa14.84□□□□□ -0.03
VPS4A-204ENST00000566354 CTAGE4Q8IX94 777 aa14.84□□□□□ -0.03
VPS4A-204ENST00000566354 VPS16Q9H269 839 aa14.84□□□□□ -0.03
VPS4A-204ENST00000566354 DDX4Q9NQI0 724 aaKnown RBP14.84□□□□□ -0.03
VPS4A-204ENST00000566354 SERPINA10Q9UK55 444 aa14.84□□□□□ -0.03
VPS4A-204ENST00000566354 L1RE1Q9UN81 338 aa14.84□□□□□ -0.03
VPS4A-204ENST00000566354 MYH1P12882 1939 aa14.84□□□□□ -0.03
VPS4A-204ENST00000566354 H3BQF6 201 aa14.84□□□□□ -0.03
VPS4A-204ENST00000566354 EIF3JO75822 258 aaKnown RBP14.84□□□□□ -0.03
VPS4A-204ENST00000566354 CACNB3P54284 484 aa14.84□□□□□ -0.03
VPS4A-204ENST00000566354 HDLBPQ00341 1268 aaKnown RBP14.84□□□□□ -0.03
VPS4A-204ENST00000566354 C12orf60Q5U649 245 aa14.84□□□□□ -0.03
VPS4A-204ENST00000566354 ARHGAP27Q6ZUM4 889 aa14.84□□□□□ -0.03
VPS4A-204ENST00000566354 PNKPQ96T60 521 aa14.84□□□□□ -0.03
VPS4A-204ENST00000566354 MRIQ9BWK5 157 aa14.84□□□□□ -0.03
VPS4A-204ENST00000566354 GBP3Q9H0R5 595 aa14.84□□□□□ -0.03
VPS4A-204ENST00000566354 BLZF1Q9H2G9 400 aa14.84□□□□□ -0.03
VPS4A-204ENST00000566354 KCNJ18B7U540 433 aa14.83□□□□□ -0.03
VPS4A-204ENST00000566354 ARHGAP25P42331 645 aa14.83□□□□□ -0.03
VPS4A-204ENST00000566354 NFIAQ12857 509 aa14.83□□□□□ -0.03
VPS4A-204ENST00000566354 KCNJ12Q14500 433 aa14.83□□□□□ -0.03
VPS4A-204ENST00000566354 NOM1Q5C9Z4 860 aaKnown RBP14.83□□□□□ -0.03
VPS4A-204ENST00000566354 ARL6IP4Q66PJ3 421 aaKnown RBP14.83□□□□□ -0.03
VPS4A-204ENST00000566354 CTCFLQ8NI51 663 aaPredicted RBP14.83□□□□□ -0.03
VPS4A-204ENST00000566354 NELFBQ8WX92 580 aa14.83□□□□□ -0.03
VPS4A-204ENST00000566354 MYO3BQ8WXR4 1341 aa14.83□□□□□ -0.03
VPS4A-204ENST00000566354 DDX60LQ5H9U9 1706 aaKnown RBP14.83□□□□□ -0.04
VPS4A-204ENST00000566354 H7C1D1 291 aa14.83□□□□□ -0.04
VPS4A-204ENST00000566354 KRT9P35527 623 aa14.83□□□□□ -0.04
VPS4A-204ENST00000566354 SETQ01105 290 aaPredicted RBP14.83□□□□□ -0.04
VPS4A-204ENST00000566354 MCM6Q14566 821 aa14.83□□□□□ -0.04
VPS4A-204ENST00000566354 CIAPIN1Q6FI81 312 aa14.83□□□□□ -0.04
VPS4A-204ENST00000566354 DYNLL2Q96FJ2 89 aa14.83□□□□□ -0.04
VPS4A-204ENST00000566354 MTRQ99707 1265 aa14.83□□□□□ -0.04
VPS4A-204ENST00000566354 CNTNAP5Q8WYK1 1306 aa14.83□□□□□ -0.04
VPS4A-204ENST00000566354 MYH8P13535 1937 aa14.83□□□□□ -0.04
VPS4A-204ENST00000566354 RNF225M0QZC1 329 aaPredicted RBP14.82□□□□□ -0.04
VPS4A-204ENST00000566354 SCG2P13521 617 aa14.82□□□□□ -0.04
VPS4A-204ENST00000566354 NLRP5P59047 1200 aa14.82□□□□□ -0.04
VPS4A-204ENST00000566354 PIK3AP1Q6ZUJ8 805 aa14.82□□□□□ -0.04
VPS4A-204ENST00000566354 SRBD1Q8N5C6 995 aaKnown RBP14.82□□□□□ -0.04
VPS4A-204ENST00000566354 PRMT6Q96LA8 375 aaPredicted RBP14.82□□□□□ -0.04
VPS4A-204ENST00000566354 PDE11AQ9HCR9 933 aa14.82□□□□□ -0.04
VPS4A-204ENST00000566354 ABCB6Q9NP58 842 aa14.82□□□□□ -0.04
VPS4A-204ENST00000566354 TAB2Q9NYJ8 693 aa14.82□□□□□ -0.04
VPS4A-204ENST00000566354 MYO6Q9UM54 1294 aa14.82□□□□□ -0.04
VPS4A-204ENST00000566354 RPN1P04843 607 aaKnown RBP14.82□□□□□ -0.04
VPS4A-204ENST00000566354 YBX3P16989 372 aaKnown RBP eCLIP14.82□□□□□ -0.04
VPS4A-204ENST00000566354 LONP1P36776 959 aaKnown RBP14.82□□□□□ -0.04
VPS4A-204ENST00000566354 ZSCAN26Q16670 478 aa14.82□□□□□ -0.04
VPS4A-204ENST00000566354 SLF1Q9BQI6 1058 aa14.82□□□□□ -0.04
VPS4A-204ENST00000566354 TDRD3Q9H7E2 651 aaKnown RBP14.82□□□□□ -0.04
VPS4A-204ENST00000566354 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.82□□□□□ -0.04
VPS4A-204ENST00000566354 EPN1Q9Y6I3 576 aaPredicted RBP14.82□□□□□ -0.04
VPS4A-204ENST00000566354 SHTN1A0MZ66 631 aa14.81□□□□□ -0.04
VPS4A-204ENST00000566354 COBLO75128 1261 aa14.81□□□□□ -0.04
VPS4A-204ENST00000566354 ABL1P00519 1130 aa14.81□□□□□ -0.04
VPS4A-204ENST00000566354 CDC25AP30304 524 aa14.81□□□□□ -0.04
VPS4A-204ENST00000566354 MCM7P33993 719 aa14.81□□□□□ -0.04
VPS4A-204ENST00000566354 AMPD2Q01433 879 aa14.81□□□□□ -0.04
VPS4A-204ENST00000566354 UBXN1Q04323 297 aa14.81□□□□□ -0.04
VPS4A-204ENST00000566354 IL17AQ16552 155 aa14.81□□□□□ -0.04
VPS4A-204ENST00000566354 SLC44A5Q8NCS7 719 aa14.81□□□□□ -0.04
VPS4A-204ENST00000566354 GOLGA5Q8TBA6 731 aa14.81□□□□□ -0.04
VPS4A-204ENST00000566354 ORC4O43929 436 aa14.81□□□□□ -0.04
VPS4A-204ENST00000566354 NDUFA10O95299 355 aa14.81□□□□□ -0.04
VPS4A-204ENST00000566354 RHOXF2BP0C7M4 288 aa14.81□□□□□ -0.04
VPS4A-204ENST00000566354 PRCPP42785 496 aa14.81□□□□□ -0.04
VPS4A-204ENST00000566354 GYS2P54840 703 aa14.81□□□□□ -0.04
VPS4A-204ENST00000566354 PFKFB3Q16875 520 aaPredicted RBP14.81□□□□□ -0.04
VPS4A-204ENST00000566354 ZFPM1Q8IX07 1006 aa14.81□□□□□ -0.04
VPS4A-204ENST00000566354 OGFOD1Q8N543 542 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms