RNA–Protein interactions for RNA: ENST00000565453.1

CDH3-204, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-204ENST00000565453 TMEM39AQ9NV64 488 aa18.33■□□□□ 0.52
CDH3-204ENST00000565453 TBX21Q9UL17 535 aa18.33■□□□□ 0.52
CDH3-204ENST00000565453 ARVCFO00192 962 aa18.32■□□□□ 0.52
CDH3-204ENST00000565453 SGSM2O43147 1006 aa18.32■□□□□ 0.52
CDH3-204ENST00000565453 DYNC1LI2O43237 492 aaPredicted RBP18.32■□□□□ 0.52
CDH3-204ENST00000565453 CYP21A2P08686 494 aa18.32■□□□□ 0.52
CDH3-204ENST00000565453 RAG1P15918 1043 aa18.32■□□□□ 0.52
CDH3-204ENST00000565453 EDNRBP24530 442 aa18.32■□□□□ 0.52
CDH3-204ENST00000565453 CALML3P27482 149 aa18.32■□□□□ 0.52
CDH3-204ENST00000565453 EPHB4P54760 987 aa18.32■□□□□ 0.52
CDH3-204ENST00000565453 KIAA1211Q6ZU35 1233 aa18.32■□□□□ 0.52
CDH3-204ENST00000565453 NOL8Q76FK4 1167 aaKnown RBP18.32■□□□□ 0.52
CDH3-204ENST00000565453 DEFB123Q8N688 67 aa18.32■□□□□ 0.52
CDH3-204ENST00000565453 SLC43A3Q8NBI5 491 aa18.32■□□□□ 0.52
CDH3-204ENST00000565453 RGS22Q8NE09 1264 aa18.32■□□□□ 0.52
CDH3-204ENST00000565453 UBAC1Q9BSL1 405 aa18.32■□□□□ 0.52
CDH3-204ENST00000565453 MROH7Q68CQ1 1323 aa18.31■□□□□ 0.52
CDH3-204ENST00000565453 PARP1P09874 1014 aaKnown RBP18.31■□□□□ 0.52
CDH3-204ENST00000565453 FSCN1Q16658 493 aaKnown RBP18.31■□□□□ 0.52
CDH3-204ENST00000565453 USH1GQ495M9 461 aa18.31■□□□□ 0.52
CDH3-204ENST00000565453 DUSP28Q4G0W2 176 aa18.31■□□□□ 0.52
CDH3-204ENST00000565453 IFIT1BQ5T764 474 aaKnown RBP18.31■□□□□ 0.52
CDH3-204ENST00000565453 CXCL17Q6UXB2 119 aa18.31■□□□□ 0.52
CDH3-204ENST00000565453 FAM126BQ8IXS8 530 aa18.31■□□□□ 0.52
CDH3-204ENST00000565453 DNERQ8NFT8 737 aa18.31■□□□□ 0.52
CDH3-204ENST00000565453 MAF1Q9H063 256 aa18.31■□□□□ 0.52
CDH3-204ENST00000565453 AP5M1Q9H0R1 490 aa18.31■□□□□ 0.52
CDH3-204ENST00000565453 JMJD4Q9H9V9 463 aa18.31■□□□□ 0.52
CDH3-204ENST00000565453 MTMR10Q9NXD2 777 aa18.31■□□□□ 0.52
CDH3-204ENST00000565453 TAF6LQ9Y6J9 622 aa18.31■□□□□ 0.52
CDH3-204ENST00000565453 GRIN2DO15399 1336 aa18.3■□□□□ 0.52
CDH3-204ENST00000565453 ABCB11O95342 1321 aa18.3■□□□□ 0.52
CDH3-204ENST00000565453 CABYRO75952 493 aa18.3■□□□□ 0.52
CDH3-204ENST00000565453 QRICH1Q2TAL8 776 aa18.3■□□□□ 0.52
CDH3-204ENST00000565453 STAG2Q8N3U4 1231 aa18.3■□□□□ 0.52
CDH3-204ENST00000565453 TBC1D5Q92609 795 aa18.3■□□□□ 0.52
CDH3-204ENST00000565453 VTI1AQ96AJ9 217 aa18.3■□□□□ 0.52
CDH3-204ENST00000565453 U3KPZ7 1027 aaPredicted RBP18.3■□□□□ 0.52
CDH3-204ENST00000565453 TIMP1P01033 207 aa18.29■□□□□ 0.52
CDH3-204ENST00000565453 CD4P01730 458 aa18.29■□□□□ 0.52
CDH3-204ENST00000565453 FAM109BQ6ICB4 259 aaPredicted RBP18.29■□□□□ 0.52
CDH3-204ENST00000565453 STOX1Q6ZVD7 989 aa18.29■□□□□ 0.52
CDH3-204ENST00000565453 MTMR8Q96EF0 704 aa18.29■□□□□ 0.52
CDH3-204ENST00000565453 WDR11Q9BZH6 1224 aa18.29■□□□□ 0.52
CDH3-204ENST00000565453 ZEB2O60315 1214 aa18.28■□□□□ 0.52
CDH3-204ENST00000565453 FPGSQ05932 587 aa18.28■□□□□ 0.52
CDH3-204ENST00000565453 PDE4DQ08499 809 aa18.28■□□□□ 0.52
CDH3-204ENST00000565453 SLC35G1Q2M3R5 365 aa18.28■□□□□ 0.52
CDH3-204ENST00000565453 SYTL5Q8TDW5 730 aaPredicted RBP18.28■□□□□ 0.52
CDH3-204ENST00000565453 MAP4K1Q92918 833 aa18.28■□□□□ 0.52
CDH3-204ENST00000565453 COL20A1Q9P218 1284 aa18.28■□□□□ 0.52
CDH3-204ENST00000565453 MAD2L2Q9UI95 211 aa18.28■□□□□ 0.52
CDH3-204ENST00000565453 PALM3A6NDB9 673 aaPredicted RBP18.27■□□□□ 0.52
CDH3-204ENST00000565453 E7EWF7 191 aa18.27■□□□□ 0.52
CDH3-204ENST00000565453 TRDNQ13061 729 aa18.27■□□□□ 0.52
CDH3-204ENST00000565453 MFSD5Q6N075 450 aa18.27■□□□□ 0.52
CDH3-204ENST00000565453 FBXO11Q86XK2 927 aa18.27■□□□□ 0.52
CDH3-204ENST00000565453 TAAR1Q96RJ0 339 aa18.27■□□□□ 0.52
CDH3-204ENST00000565453 SENP2Q9HC62 589 aa18.27■□□□□ 0.52
CDH3-204ENST00000565453 VAT1LQ9HCJ6 419 aa18.27■□□□□ 0.52
CDH3-204ENST00000565453 KLRF2D3W0D1 207 aa18.26■□□□□ 0.51
CDH3-204ENST00000565453 OPLAHO14841 1288 aa18.26■□□□□ 0.51
CDH3-204ENST00000565453 TLR3O15455 904 aaKnown RBP18.26■□□□□ 0.51
CDH3-204ENST00000565453 ANTXR2P58335 489 aa18.26■□□□□ 0.51
CDH3-204ENST00000565453 PSMC6P62333 389 aa18.26■□□□□ 0.51
CDH3-204ENST00000565453 ITGA7Q13683 1181 aa18.26■□□□□ 0.51
CDH3-204ENST00000565453 GRM4Q14833 912 aa18.26■□□□□ 0.51
CDH3-204ENST00000565453 NCOA7Q8NI08 942 aa18.26■□□□□ 0.51
CDH3-204ENST00000565453 MPHOSPH6Q99547 160 aaKnown RBP18.26■□□□□ 0.51
CDH3-204ENST00000565453 SEZ6LQ9BYH1 1024 aa18.26■□□□□ 0.51
CDH3-204ENST00000565453 MRPL11Q9Y3B7 192 aaKnown RBP18.26■□□□□ 0.51
CDH3-204ENST00000565453 IFIT3O14879 490 aaKnown RBP18.25■□□□□ 0.51
CDH3-204ENST00000565453 NKRFO15226 690 aaKnown RBP eCLIP18.25■□□□□ 0.51
CDH3-204ENST00000565453 DHX16O60231 1041 aaKnown RBP18.25■□□□□ 0.51
CDH3-204ENST00000565453 PPP1R11O60927 126 aaPredicted RBP18.25■□□□□ 0.51
CDH3-204ENST00000565453 SMAD3P84022 425 aaKnown RBP18.25■□□□□ 0.51
CDH3-204ENST00000565453 PURAQ00577 322 aaKnown RBP18.25■□□□□ 0.51
CDH3-204ENST00000565453 GHRHRQ02643 423 aa18.25■□□□□ 0.51
CDH3-204ENST00000565453 MCF2L2Q86YR7 1114 aa18.25■□□□□ 0.51
CDH3-204ENST00000565453 MB21D2Q8IYB1 491 aaPredicted RBP18.25■□□□□ 0.51
CDH3-204ENST00000565453 OR6J1Q8NGC5 347 aa18.25■□□□□ 0.51
CDH3-204ENST00000565453 SCFD2Q8WU76 684 aa18.25■□□□□ 0.51
CDH3-204ENST00000565453 RBM8AQ9Y5S9 174 aaKnown RBP18.25■□□□□ 0.51
CDH3-204ENST00000565453 MYH6P13533 1939 aa18.24■□□□□ 0.51
CDH3-204ENST00000565453 B4DLN1 442 aa18.24■□□□□ 0.51
CDH3-204ENST00000565453 ARIH2O95376 493 aa18.24■□□□□ 0.51
CDH3-204ENST00000565453 MRPL12P52815 198 aaKnown RBP18.24■□□□□ 0.51
CDH3-204ENST00000565453 TROAPQ12815 778 aa18.24■□□□□ 0.51
CDH3-204ENST00000565453 PPP2R5BQ15173 497 aa18.24■□□□□ 0.51
CDH3-204ENST00000565453 C16orf59Q7L2K0 433 aa18.24■□□□□ 0.51
CDH3-204ENST00000565453 RALYLQ86SE5 291 aaKnown RBP18.24■□□□□ 0.51
CDH3-204ENST00000565453 COPS5Q92905 334 aa18.24■□□□□ 0.51
CDH3-204ENST00000565453 RNPC3Q96LT9 517 aaKnown RBP18.24■□□□□ 0.51
CDH3-204ENST00000565453 GUCD1Q96NT3 240 aa18.24■□□□□ 0.51
CDH3-204ENST00000565453 AMNQ9BXJ7 453 aa18.24■□□□□ 0.51
CDH3-204ENST00000565453 LSG1Q9H089 658 aaKnown RBP18.24■□□□□ 0.51
CDH3-204ENST00000565453 RIOX1Q9H6W3 641 aa18.24■□□□□ 0.51
CDH3-204ENST00000565453 POLR3EQ9NVU0 708 aa18.24■□□□□ 0.51
CDH3-204ENST00000565453 STXBP5LQ9Y2K9 1186 aa18.24■□□□□ 0.51
CDH3-204ENST00000565453 ZBTB5O15062 677 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms