RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 TOX2Q96NM4 488 aa12.67□□□□□ -0.38
VPS39-208ENST00000564994 UBAC1Q9BSL1 405 aa12.67□□□□□ -0.38
VPS39-208ENST00000564994 VTA1Q9NP79 307 aa12.67□□□□□ -0.38
VPS39-208ENST00000564994 ADD3Q9UEY8 706 aaKnown RBP12.67□□□□□ -0.38
VPS39-208ENST00000564994 KIAA1217Q5T5P2 1943 aa12.66□□□□□ -0.38
VPS39-208ENST00000564994 DYNC1LI2O43237 492 aaPredicted RBP12.66□□□□□ -0.38
VPS39-208ENST00000564994 EPHB4P54760 987 aa12.66□□□□□ -0.38
VPS39-208ENST00000564994 IFIT1BQ5T764 474 aaKnown RBP12.66□□□□□ -0.38
VPS39-208ENST00000564994 IQSEC1Q6DN90 963 aa12.66□□□□□ -0.38
VPS39-208ENST00000564994 CXCL17Q6UXB2 119 aa12.66□□□□□ -0.38
VPS39-208ENST00000564994 KIAA1211Q6ZU35 1233 aa12.66□□□□□ -0.38
VPS39-208ENST00000564994 STOX1Q6ZVD7 989 aa12.66□□□□□ -0.38
VPS39-208ENST00000564994 STAG2Q8N3U4 1231 aa12.66□□□□□ -0.38
VPS39-208ENST00000564994 TBC1D5Q92609 795 aa12.66□□□□□ -0.38
VPS39-208ENST00000564994 TMEM39AQ9NV64 488 aa12.66□□□□□ -0.38
VPS39-208ENST00000564994 PNMA2Q9UL42 364 aa12.66□□□□□ -0.38
VPS39-208ENST00000564994 LOC102724159A0A0B4J2E5 919 aa12.65□□□□□ -0.38
VPS39-208ENST00000564994 A0A0U1RQG5 324 aaPredicted RBP12.65□□□□□ -0.38
VPS39-208ENST00000564994 RBM47A0AV96 593 aaKnown RBP12.65□□□□□ -0.38
VPS39-208ENST00000564994 ARVCFO00192 962 aa12.65□□□□□ -0.38
VPS39-208ENST00000564994 PARP1P09874 1014 aaKnown RBP12.65□□□□□ -0.38
VPS39-208ENST00000564994 RAG1P15918 1043 aa12.65□□□□□ -0.38
VPS39-208ENST00000564994 EDNRBP24530 442 aa12.65□□□□□ -0.38
VPS39-208ENST00000564994 PWP2Q15269 919 aaKnown RBP12.65□□□□□ -0.38
VPS39-208ENST00000564994 FSCN1Q16658 493 aaKnown RBP12.65□□□□□ -0.38
VPS39-208ENST00000564994 QRICH1Q2TAL8 776 aa12.65□□□□□ -0.38
VPS39-208ENST00000564994 SKAP1Q86WV1 359 aa12.65□□□□□ -0.38
VPS39-208ENST00000564994 AP5M1Q9H0R1 490 aa12.65□□□□□ -0.38
VPS39-208ENST00000564994 JMJD4Q9H9V9 463 aa12.65□□□□□ -0.38
VPS39-208ENST00000564994 SENP2Q9HC62 589 aa12.65□□□□□ -0.38
VPS39-208ENST00000564994 VAT1LQ9HCJ6 419 aa12.65□□□□□ -0.38
VPS39-208ENST00000564994 TBX21Q9UL17 535 aa12.65□□□□□ -0.38
VPS39-208ENST00000564994 U3KPZ7 1027 aaPredicted RBP12.65□□□□□ -0.38
VPS39-208ENST00000564994 GRIN2DO15399 1336 aa12.64□□□□□ -0.39
VPS39-208ENST00000564994 ABCB11O95342 1321 aa12.64□□□□□ -0.39
VPS39-208ENST00000564994 DCDC2CA8MYV0 355 aa12.64□□□□□ -0.39
VPS39-208ENST00000564994 E7EWF7 191 aa12.64□□□□□ -0.39
VPS39-208ENST00000564994 SLC35G1Q2M3R5 365 aa12.64□□□□□ -0.39
VPS39-208ENST00000564994 DUSP28Q4G0W2 176 aa12.64□□□□□ -0.39
VPS39-208ENST00000564994 FAM126BQ8IXS8 530 aa12.64□□□□□ -0.39
VPS39-208ENST00000564994 DEFB123Q8N688 67 aa12.64□□□□□ -0.39
VPS39-208ENST00000564994 SLC43A3Q8NBI5 491 aa12.64□□□□□ -0.39
VPS39-208ENST00000564994 RGS22Q8NE09 1264 aa12.64□□□□□ -0.39
VPS39-208ENST00000564994 DNERQ8NFT8 737 aa12.64□□□□□ -0.39
VPS39-208ENST00000564994 MAP4K1Q92918 833 aa12.64□□□□□ -0.39
VPS39-208ENST00000564994 VTI1AQ96AJ9 217 aa12.64□□□□□ -0.39
VPS39-208ENST00000564994 WDR11Q9BZH6 1224 aa12.64□□□□□ -0.39
VPS39-208ENST00000564994 COL20A1Q9P218 1284 aa12.64□□□□□ -0.39
VPS39-208ENST00000564994 MAD2L2Q9UI95 211 aa12.64□□□□□ -0.39
VPS39-208ENST00000564994 Q9Y3F1 56 aa12.64□□□□□ -0.39
VPS39-208ENST00000564994 MROH7Q68CQ1 1323 aa12.63□□□□□ -0.39
VPS39-208ENST00000564994 SCN10AQ9Y5Y9 1956 aa12.63□□□□□ -0.39
VPS39-208ENST00000564994 PALM3A6NDB9 673 aaPredicted RBP12.63□□□□□ -0.39
VPS39-208ENST00000564994 OPLAHO14841 1288 aa12.63□□□□□ -0.39
VPS39-208ENST00000564994 DHX16O60231 1041 aaKnown RBP12.63□□□□□ -0.39
VPS39-208ENST00000564994 PPP1R11O60927 126 aaPredicted RBP12.63□□□□□ -0.39
VPS39-208ENST00000564994 TIMP1P01033 207 aa12.63□□□□□ -0.39
VPS39-208ENST00000564994 CD4P01730 458 aa12.63□□□□□ -0.39
VPS39-208ENST00000564994 ANTXR2P58335 489 aa12.63□□□□□ -0.39
VPS39-208ENST00000564994 TRDNQ13061 729 aa12.63□□□□□ -0.39
VPS39-208ENST00000564994 CHST3Q7LGC8 479 aa12.63□□□□□ -0.39
VPS39-208ENST00000564994 FBXO11Q86XK2 927 aa12.63□□□□□ -0.39
VPS39-208ENST00000564994 SYTL5Q8TDW5 730 aaPredicted RBP12.63□□□□□ -0.39
VPS39-208ENST00000564994 MTMR8Q96EF0 704 aa12.63□□□□□ -0.39
VPS39-208ENST00000564994 TAAR1Q96RJ0 339 aa12.63□□□□□ -0.39
VPS39-208ENST00000564994 RBM8AQ9Y5S9 174 aaKnown RBP12.63□□□□□ -0.39
VPS39-208ENST00000564994 MYH7BA7E2Y1 1941 aa12.62□□□□□ -0.39
VPS39-208ENST00000564994 KLRF2D3W0D1 207 aa12.62□□□□□ -0.39
VPS39-208ENST00000564994 IFIT3O14879 490 aaKnown RBP12.62□□□□□ -0.39
VPS39-208ENST00000564994 CABYRO75952 493 aa12.62□□□□□ -0.39
VPS39-208ENST00000564994 ARIH2O95376 493 aa12.62□□□□□ -0.39
VPS39-208ENST00000564994 PSMC6P62333 389 aa12.62□□□□□ -0.39
VPS39-208ENST00000564994 FPGSQ05932 587 aa12.62□□□□□ -0.39
VPS39-208ENST00000564994 PDE4DQ08499 809 aa12.62□□□□□ -0.39
VPS39-208ENST00000564994 ITGA7Q13683 1181 aa12.62□□□□□ -0.39
VPS39-208ENST00000564994 COL9A3Q14050 684 aaPredicted RBP12.62□□□□□ -0.39
VPS39-208ENST00000564994 GRM4Q14833 912 aa12.62□□□□□ -0.39
VPS39-208ENST00000564994 MB21D2Q8IYB1 491 aaPredicted RBP12.62□□□□□ -0.39
VPS39-208ENST00000564994 NCOA7Q8NI08 942 aa12.62□□□□□ -0.39
VPS39-208ENST00000564994 COPS5Q92905 334 aa12.62□□□□□ -0.39
VPS39-208ENST00000564994 MTMR10Q9NXD2 777 aa12.62□□□□□ -0.39
VPS39-208ENST00000564994 CYTH3O43739 400 aa12.61□□□□□ -0.39
VPS39-208ENST00000564994 ZEB2O60315 1214 aa12.61□□□□□ -0.39
VPS39-208ENST00000564994 TROAPQ12815 778 aa12.61□□□□□ -0.39
VPS39-208ENST00000564994 MFSD5Q6N075 450 aa12.61□□□□□ -0.39
VPS39-208ENST00000564994 RALYLQ86SE5 291 aaKnown RBP12.61□□□□□ -0.39
VPS39-208ENST00000564994 OR6J1Q8NGC5 347 aa12.61□□□□□ -0.39
VPS39-208ENST00000564994 IGDCC4Q8TDY8 1250 aa12.61□□□□□ -0.39
VPS39-208ENST00000564994 MAF1Q9H063 256 aa12.61□□□□□ -0.39
VPS39-208ENST00000564994 LSG1Q9H089 658 aaKnown RBP12.61□□□□□ -0.39
VPS39-208ENST00000564994 MRPL11Q9Y3B7 192 aaKnown RBP12.61□□□□□ -0.39
VPS39-208ENST00000564994 EYSQ5T1H1 3165 aa12.61□□□□□ -0.39
VPS39-208ENST00000564994 ZBTB5O15062 677 aa12.6□□□□□ -0.39
VPS39-208ENST00000564994 TLR3O15455 904 aaKnown RBP12.6□□□□□ -0.39
VPS39-208ENST00000564994 CFBP00751 764 aa12.6□□□□□ -0.39
VPS39-208ENST00000564994 PURAQ00577 322 aaKnown RBP12.6□□□□□ -0.39
VPS39-208ENST00000564994 GHRHRQ02643 423 aa12.6□□□□□ -0.39
VPS39-208ENST00000564994 WTAPQ15007 396 aa12.6□□□□□ -0.39
VPS39-208ENST00000564994 PPP2R5BQ15173 497 aa12.6□□□□□ -0.39
VPS39-208ENST00000564994 FAM109BQ6ICB4 259 aaPredicted RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms