RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 NOC4LQ9BVI4 516 aaKnown RBP15.09■□□□□ 0.01
CLK3-215ENST00000564353 SCN7AQ01118 1682 aa15.09■□□□□ 0.01
CLK3-215ENST00000564353 DNA2P51530 1060 aa15.08■□□□□ 0.01
CLK3-215ENST00000564353 ENOX2Q16206 610 aaKnown RBP15.08■□□□□ 0.01
CLK3-215ENST00000564353 SKIDA1Q1XH10 827 aa15.08■□□□□ 0.01
CLK3-215ENST00000564353 TSR1Q2NL82 804 aaKnown RBP15.08■□□□□ 0.01
CLK3-215ENST00000564353 TTBK2Q6IQ55 1244 aa15.08■□□□□ 0.01
CLK3-215ENST00000564353 ANKRD13CQ8N6S4 541 aa15.08■□□□□ 0.01
CLK3-215ENST00000564353 GIMAP8Q8ND71 665 aaPredicted RBP15.08■□□□□ 0.01
CLK3-215ENST00000564353 RRP36Q96EU6 259 aaKnown RBP15.08■□□□□ 0.01
CLK3-215ENST00000564353 MMTAG2Q9BU76 263 aaKnown RBP15.08■□□□□ 0.01
CLK3-215ENST00000564353 MYO6Q9UM54 1294 aa15.08■□□□□ 0.01
CLK3-215ENST00000564353 ITIH6Q6UXX5 1313 aa15.08■□□□□ 0.01
CLK3-215ENST00000564353 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.08■□□□□ 0
CLK3-215ENST00000564353 CTAGE15A4D2H0 777 aa15.08■□□□□ 0
CLK3-215ENST00000564353 CTAGE8P0CG41 777 aa15.08■□□□□ 0
CLK3-215ENST00000564353 PRR5LQ6MZQ0 368 aa15.08■□□□□ 0
CLK3-215ENST00000564353 NEK8Q86SG6 692 aa15.08■□□□□ 0
CLK3-215ENST00000564353 CTAGE6Q86UF2 777 aa15.08■□□□□ 0
CLK3-215ENST00000564353 CTAGE4Q8IX94 777 aa15.08■□□□□ 0
CLK3-215ENST00000564353 KIAA0895Q8NCT3 520 aa15.08■□□□□ 0
CLK3-215ENST00000564353 MMS19Q96T76 1030 aa15.08■□□□□ 0
CLK3-215ENST00000564353 PLEKHA4Q9H4M7 779 aa15.08■□□□□ 0
CLK3-215ENST00000564353 POLD4Q9HCU8 107 aa15.08■□□□□ 0
CLK3-215ENST00000564353 LRRC4BQ9NT99 713 aa15.08■□□□□ 0
CLK3-215ENST00000564353 POLLQ9UGP5 575 aa15.08■□□□□ 0
CLK3-215ENST00000564353 MPHOSPH10O00566 681 aaKnown RBP15.07■□□□□ 0
CLK3-215ENST00000564353 GNAQP50148 359 aa15.07■□□□□ 0
CLK3-215ENST00000564353 DPP8Q6V1X1 898 aaPredicted RBP15.07■□□□□ 0
CLK3-215ENST00000564353 ZNF507Q8TCN5 953 aa15.07■□□□□ 0
CLK3-215ENST00000564353 SMARCAL1Q9NZC9 954 aa15.07■□□□□ 0
CLK3-215ENST00000564353 VPS18Q9P253 973 aa15.07■□□□□ 0
CLK3-215ENST00000564353 RHOBTB3O94955 611 aa15.07■□□□□ 0
CLK3-215ENST00000564353 TAL1P17542 331 aaPredicted RBP15.07■□□□□ 0
CLK3-215ENST00000564353 CACNB3P54284 484 aa15.07■□□□□ 0
CLK3-215ENST00000564353 APBA1Q02410 837 aa15.07■□□□□ 0
CLK3-215ENST00000564353 TAF3Q5VWG9 929 aa15.07■□□□□ 0
CLK3-215ENST00000564353 KCNK18Q7Z418 384 aa15.07■□□□□ 0
CLK3-215ENST00000564353 REXO1Q8N1G1 1221 aaKnown RBP15.07■□□□□ 0
CLK3-215ENST00000564353 P2RX5Q93086 422 aa15.07■□□□□ 0
CLK3-215ENST00000564353 C6orf50Q9HD87 102 aa15.07■□□□□ 0
CLK3-215ENST00000564353 SH3GLB2Q9NR46 395 aa15.07■□□□□ 0
CLK3-215ENST00000564353 AKR1B1P15121 316 aa15.07■□□□□ 0
CLK3-215ENST00000564353 MATR3P43243 847 aaKnown RBP eCLIP15.07■□□□□ 0
CLK3-215ENST00000564353 CT47A1Q5JQC4 288 aaPredicted RBP15.07■□□□□ 0
CLK3-215ENST00000564353 CEP112Q8N8E3 955 aa15.07■□□□□ 0
CLK3-215ENST00000564353 CCDC51Q96ER9 411 aa15.07■□□□□ 0
CLK3-215ENST00000564353 ZMYND12Q9H0C1 365 aa15.07■□□□□ 0
CLK3-215ENST00000564353 SEMA6BQ9H3T3 888 aa15.07■□□□□ 0
CLK3-215ENST00000564353 NHEJ1Q9H9Q4 299 aaPredicted RBP15.07■□□□□ 0
CLK3-215ENST00000564353 MYMKA6NI61 221 aa15.06■□□□□ 0
CLK3-215ENST00000564353 CXCR5P32302 372 aa15.06■□□□□ 0
CLK3-215ENST00000564353 LMAN1P49257 510 aa15.06■□□□□ 0
CLK3-215ENST00000564353 SNAP25P60880 206 aa15.06■□□□□ 0
CLK3-215ENST00000564353 KCTD1Q719H9 257 aa15.06■□□□□ 0
CLK3-215ENST00000564353 CCDC102AQ96A19 550 aa15.06■□□□□ 0
CLK3-215ENST00000564353 MMRN2Q9H8L6 949 aa15.06■□□□□ 0
CLK3-215ENST00000564353 LRWD1Q9UFC0 647 aa15.06■□□□□ 0
CLK3-215ENST00000564353 GSTO1P78417 241 aa15.06■□□□□ 0
CLK3-215ENST00000564353 DOK7Q18PE1 504 aa15.06■□□□□ 0
CLK3-215ENST00000564353 BEND6Q5SZJ8 279 aaPredicted RBP15.06■□□□□ 0
CLK3-215ENST00000564353 JAKMIP2Q96AA8 810 aa15.06■□□□□ 0
CLK3-215ENST00000564353 CCSER1Q9C0I3 900 aa15.06■□□□□ 0
CLK3-215ENST00000564353 JADE2Q9NQC1 790 aa15.06■□□□□ 0
CLK3-215ENST00000564353 GGA1Q9UJY5 639 aa15.06■□□□□ 0
CLK3-215ENST00000564353 PDS5AQ29RF7 1337 aaKnown RBP15.05■□□□□ 0
CLK3-215ENST00000564353 MYCNP04198 464 aaPredicted RBP15.05■□□□□ 0
CLK3-215ENST00000564353 CALCRLQ16602 461 aa15.05■□□□□ 0
CLK3-215ENST00000564353 MEX3CQ5U5Q3 659 aaKnown RBP15.05■□□□□ 0
CLK3-215ENST00000564353 CDK5RAP3Q96JB5 506 aa15.05■□□□□ 0
CLK3-215ENST00000564353 PYM1Q9BRP8 204 aaKnown RBP15.05■□□□□ 0
CLK3-215ENST00000564353 TANGO6Q9C0B7 1094 aa15.05■□□□□ 0
CLK3-215ENST00000564353 EHD2Q9NZN4 543 aa15.05■□□□□ 0
CLK3-215ENST00000564353 MARCH6O60337 910 aa15.05■□□□□ -0
CLK3-215ENST00000564353 TNNT3P45378 269 aaPredicted RBP15.05■□□□□ -0
CLK3-215ENST00000564353 HNRNPH2P55795 449 aaKnown RBP15.05■□□□□ -0
CLK3-215ENST00000564353 RHBDL3P58872 404 aa15.05■□□□□ -0
CLK3-215ENST00000564353 C16orf86Q6ZW13 317 aa15.05■□□□□ -0
CLK3-215ENST00000564353 C2CD5Q86YS7 1000 aa15.05■□□□□ -0
CLK3-215ENST00000564353 CAGE1Q8TC20 777 aa15.05■□□□□ -0
CLK3-215ENST00000564353 MLXIPQ9HAP2 919 aa15.05■□□□□ -0
CLK3-215ENST00000564353 DDX4Q9NQI0 724 aaKnown RBP15.05■□□□□ -0
CLK3-215ENST00000564353 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.05■□□□□ -0
CLK3-215ENST00000564353 LEMD3Q9Y2U8 911 aa15.05■□□□□ -0
CLK3-215ENST00000564353 PCDHAC2Q9Y5I4 1007 aa15.05■□□□□ -0
CLK3-215ENST00000564353 SNED1Q8TER0 1413 aa15.05■□□□□ -0
CLK3-215ENST00000564353 CCDC151A5D8V7 595 aa15.04■□□□□ -0
CLK3-215ENST00000564353 LDHCP07864 332 aa15.04■□□□□ -0
CLK3-215ENST00000564353 CYP2C19P33261 490 aa15.04■□□□□ -0
CLK3-215ENST00000564353 FAM193AP78312 1265 aa15.04■□□□□ -0
CLK3-215ENST00000564353 GRB10Q13322 594 aa15.04■□□□□ -0
CLK3-215ENST00000564353 ECM1Q16610 540 aa15.04■□□□□ -0
CLK3-215ENST00000564353 CCDC96Q2M329 555 aa15.04■□□□□ -0
CLK3-215ENST00000564353 MIIPQ5JXC2 388 aa15.04■□□□□ -0
CLK3-215ENST00000564353 TMED8Q6PL24 325 aaPredicted RBP15.04■□□□□ -0
CLK3-215ENST00000564353 KRT25Q7Z3Z0 450 aa15.04■□□□□ -0
CLK3-215ENST00000564353 ZHX3Q9H4I2 956 aa15.04■□□□□ -0
CLK3-215ENST00000564353 THAP9Q9H5L6 903 aa15.04■□□□□ -0
CLK3-215ENST00000564353 CAPN11Q9UMQ6 739 aa15.04■□□□□ -0
CLK3-215ENST00000564353 NPHP3-ACAD11A0A0J9YXS1 232 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms