RNA–Protein interactions for RNA: ENST00000564288.5

MACF1-231, Transcript of microtubule-actin crosslinking factor 1, human

APPRIS ALT2 TSL 5 BASIC

Gene MACF1, Length 24,828 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MACF1-231	ENST00000564288	PDIA3	P30101	505 aa	Known RBP	4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	ZNF449	Q6P9G9	518 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	TRIM47	Q96LD4	638 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	PTGIS	Q16647	500 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	WAPL	Q7Z5K2	1190 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	CAVIN3	Q969G5	261 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	ABTB1	Q969K4	478 aa	Predicted RBP	4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	ATP8A1	Q9Y2Q0	1164 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	COPS2	P61201	443 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	MFSD6	Q6ZSS7	791 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	ARMCX6	Q7L4S7	300 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	ABCF2	Q9UG63	623 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	GRIK3	Q13003	919 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	TRIM74	Q86UV6	250 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	TRIM73	Q86UV7	250 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	GABPB2	Q8TAK5	448 aa	Predicted RBP	4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	FAM96A	Q9H5X1	160 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	SNX1	Q13596	522 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	TMEM154	Q6P9G4	183 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	CMTM5	Q96DZ9	223 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	SRPRB	Q9Y5M8	271 aa	Known RBP	4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	SCTR	P47872	440 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	CCDC144B	Q3MJ40	725 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	TEDDM1	Q5T9Z0	273 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	CCDC144CP	Q8IYA2	1237 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	NGDN	Q8NEJ9	315 aa	Known RBP	4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	TBC1D23	Q9NUY8	699 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	FOSB	P53539	338 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	TRMT10C	Q7L0Y3	403 aa	Known RBP	4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	PGBD1	Q96JS3	809 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	PHACTR1	Q9C0D0	580 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	CD248	Q9HCU0	757 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	NVL	O15381	856 aa	Known RBP	4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	PPIP5K2	O43314	1243 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	UBXN6	Q9BZV1	441 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	PAK1	Q13153	545 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	XRCC4	Q13426	336 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	SH3GL2	Q99962	352 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	ECT2	Q9H8V3	914 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	COMMD3-BMI1	R4GMX3	469 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	CAND2	O75155	1236 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	DRG2	P55039	364 aa	Known RBP	4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	FKBP4	Q02790	459 aa	Known RBP eCLIP	4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	KRT72	Q14CN4	511 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	CYTH3	O43739	400 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	AFM	P43652	599 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	TTC27	Q6P3X3	843 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	MB21D1	Q8N884	522 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	USP28	Q96RU2	1077 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	CROCC2	H7BZ55	1655 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	CBFA2T3	O75081	653 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	ESRRA	P11474	423 aa	Predicted RBP	4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	GUCY1B3	Q02153	619 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	MORC4	Q8TE76	937 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	ZBTB10	Q96DT7	871 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	LZTS2	Q9BRK4	669 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	GNAT3	A8MTJ3	354 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	KLHL2	O95198	593 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	CLCN2	P51788	898 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	AP2B1	P63010	937 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	CCZ1B	P86790	482 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	CCZ1	P86791	482 aa	Predicted RBP	4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	FMR1NB	Q8N0W7	255 aa	Predicted RBP	4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	NPTXR	O95502	500 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	HOXB6	P17509	224 aa	Known RBP	4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	ATP4A	P20648	1035 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	ARID5B	Q14865	1188 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	KSR2	Q6VAB6	950 aa		4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	LSG1	Q9H089	658 aa	Known RBP	4.64	□□□□□ -1.67
MACF1-231	ENST00000564288	SOS2	Q07890	1332 aa	Predicted RBP	4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	XPO1	O14980	1071 aa	Known RBP	4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	RAD23B	P54727	409 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	ZNF268	Q14587	947 aa	Predicted RBP	4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	USH1G	Q495M9	461 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	CNNM4	Q6P4Q7	775 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	CALB2	P22676	271 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	CTCF	P49711	727 aa	Predicted RBP	4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	PSMC1	P62191	440 aa	Known RBP	4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	C2CD5	Q86YS7	1000 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	SSH3	Q8TE77	659 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	C17orf50	Q8WW18	174 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	RNF113A	O15541	343 aa	Known RBP	4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	ASPH	Q12797	758 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	CSGALNACT2	Q8N6G5	542 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	FOXP1	Q9H334	677 aa	Predicted RBP	4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	CDR2	Q01850	454 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	TMTC3	Q6ZXV5	915 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	WDR24	Q96S15	920 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	FAM133B	Q5BKY9	247 aa	Known RBP	4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	RRAGA	Q7L523	313 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	IQCK	Q8N0W5	287 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	TEKT1	Q969V4	418 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	CCDC87	Q9NVE4	849 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	OTUD6A	Q7L8S5	288 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	TERB1	Q8NA31	727 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	ANKRD33B	A6NCL7	494 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	CD2BP2	O95400	341 aa	Known RBP	4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	METAP2	P50579	478 aa	Known RBP eCLIP	4.63	□□□□□ -1.67	5e-7	■■■□□ 16.3
MACF1-231	ENST00000564288	ADAR	P55265	1226 aa	Known RBP	4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	FLII	Q13045	1269 aa		4.63	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms