RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 MYCNP04198 464 aaPredicted RBP15.53■□□□□ 0.08
CLK3-213ENST00000563842 PSMA5P28066 241 aa15.53■□□□□ 0.08
CLK3-213ENST00000563842 FGD1P98174 961 aa15.53■□□□□ 0.08
CLK3-213ENST00000563842 EXOSC10Q01780 885 aaKnown RBP15.53■□□□□ 0.08
CLK3-213ENST00000563842 LRRC41Q15345 812 aa15.53■□□□□ 0.08
CLK3-213ENST00000563842 CCDC144BQ3MJ40 725 aa15.53■□□□□ 0.08
CLK3-213ENST00000563842 GJC2Q5T442 439 aaPredicted RBP15.53■□□□□ 0.08
CLK3-213ENST00000563842 SLC30A10Q6XR72 485 aa15.53■□□□□ 0.08
CLK3-213ENST00000563842 HOMER1Q86YM7 354 aa15.53■□□□□ 0.08
CLK3-213ENST00000563842 RASEFQ8IZ41 740 aa15.53■□□□□ 0.08
CLK3-213ENST00000563842 SPZ1Q9BXG8 430 aa15.53■□□□□ 0.08
CLK3-213ENST00000563842 SENP6Q9GZR1 1112 aaPredicted RBP15.53■□□□□ 0.08
CLK3-213ENST00000563842 PCDHA1Q9Y5I3 950 aa15.53■□□□□ 0.08
CLK3-213ENST00000563842 TNFAIP2Q03169 654 aa15.52■□□□□ 0.08
CLK3-213ENST00000563842 ADCK5Q3MIX3 580 aa15.52■□□□□ 0.08
CLK3-213ENST00000563842 IQSEC1Q6DN90 963 aa15.52■□□□□ 0.08
CLK3-213ENST00000563842 BLOC1S2Q6QNY1 142 aa15.52■□□□□ 0.08
CLK3-213ENST00000563842 RRP36Q96EU6 259 aaKnown RBP15.52■□□□□ 0.08
CLK3-213ENST00000563842 PIGSQ96S52 555 aa15.52■□□□□ 0.08
CLK3-213ENST00000563842 TSEN34Q9BSV6 310 aaKnown RBP15.52■□□□□ 0.08
CLK3-213ENST00000563842 LRRC2Q9BYS8 371 aa15.52■□□□□ 0.08
CLK3-213ENST00000563842 KATNBL1Q9H079 304 aa15.52■□□□□ 0.08
CLK3-213ENST00000563842 GPHNQ9NQX3 736 aaPredicted RBP15.52■□□□□ 0.08
CLK3-213ENST00000563842 SEC63Q9UGP8 760 aaKnown RBP15.52■□□□□ 0.08
CLK3-213ENST00000563842 ASTN1O14525 1302 aa15.51■□□□□ 0.07
CLK3-213ENST00000563842 CYTH3O43739 400 aa15.51■□□□□ 0.07
CLK3-213ENST00000563842 PGK1P00558 417 aa15.51■□□□□ 0.07
CLK3-213ENST00000563842 CFBP00751 764 aa15.51■□□□□ 0.07
CLK3-213ENST00000563842 PDE4DQ08499 809 aa15.51■□□□□ 0.07
CLK3-213ENST00000563842 NOL8Q76FK4 1167 aaKnown RBP15.51■□□□□ 0.07
CLK3-213ENST00000563842 FANCBQ8NB91 859 aa15.51■□□□□ 0.07
CLK3-213ENST00000563842 PCSK9Q8NBP7 692 aaKnown RBP15.51■□□□□ 0.07
CLK3-213ENST00000563842 NSUN6Q8TEA1 469 aaKnown RBP15.51■□□□□ 0.07
CLK3-213ENST00000563842 JAKMIP1Q96N16 626 aaKnown RBP15.51■□□□□ 0.07
CLK3-213ENST00000563842 MYL10Q9BUA6 226 aa15.51■□□□□ 0.07
CLK3-213ENST00000563842 RBM28Q9NW13 759 aaKnown RBP15.51■□□□□ 0.07
CLK3-213ENST00000563842 SNX14Q9Y5W7 946 aa15.51■□□□□ 0.07
CLK3-213ENST00000563842 SYNRGQ9UMZ2 1314 aa15.5■□□□□ 0.07
CLK3-213ENST00000563842 MOXD2PA6NHM9 499 aa15.5■□□□□ 0.07
CLK3-213ENST00000563842 ADAMTS4O75173 837 aa15.5■□□□□ 0.07
CLK3-213ENST00000563842 FXR1P51114 621 aaKnown RBP eCLIP15.5■□□□□ 0.07
CLK3-213ENST00000563842 RCAN1P53805 252 aa15.5■□□□□ 0.07
CLK3-213ENST00000563842 GHRHRQ02643 423 aa15.5■□□□□ 0.07
CLK3-213ENST00000563842 PPP2R5BQ15173 497 aa15.5■□□□□ 0.07
CLK3-213ENST00000563842 APOA5Q6Q788 366 aa15.5■□□□□ 0.07
CLK3-213ENST00000563842 EEPD1Q7L9B9 569 aa15.5■□□□□ 0.07
CLK3-213ENST00000563842 SYTL5Q8TDW5 730 aaPredicted RBP15.5■□□□□ 0.07
CLK3-213ENST00000563842 PURBQ96QR8 312 aaKnown RBP15.5■□□□□ 0.07
CLK3-213ENST00000563842 IWS1Q96ST2 819 aa15.5■□□□□ 0.07
CLK3-213ENST00000563842 AP5M1Q9H0R1 490 aa15.5■□□□□ 0.07
CLK3-213ENST00000563842 PHF24Q9UPV7 400 aa15.5■□□□□ 0.07
CLK3-213ENST00000563842 Q9Y3F1 56 aa15.5■□□□□ 0.07
CLK3-213ENST00000563842 MYH7BA7E2Y1 1941 aa15.5■□□□□ 0.07
CLK3-213ENST00000563842 H0YGN5 161 aa15.49■□□□□ 0.07
CLK3-213ENST00000563842 ZBTB43O43298 467 aa15.49■□□□□ 0.07
CLK3-213ENST00000563842 C6orf222P0C671 652 aaPredicted RBP15.49■□□□□ 0.07
CLK3-213ENST00000563842 EDNRBP24530 442 aa15.49■□□□□ 0.07
CLK3-213ENST00000563842 CST5P28325 142 aaPredicted RBP15.49■□□□□ 0.07
CLK3-213ENST00000563842 ADCYAP1R1P41586 468 aa15.49■□□□□ 0.07
CLK3-213ENST00000563842 HSD17B4P51659 736 aa15.49■□□□□ 0.07
CLK3-213ENST00000563842 GJA9P57773 515 aa15.49■□□□□ 0.07
CLK3-213ENST00000563842 TAPT1Q6NXT6 567 aa15.49■□□□□ 0.07
CLK3-213ENST00000563842 MICU3Q86XE3 530 aa15.49■□□□□ 0.07
CLK3-213ENST00000563842 POTEDQ86YR6 584 aa15.49■□□□□ 0.07
CLK3-213ENST00000563842 FBXO16Q8IX29 292 aaPredicted RBP15.49■□□□□ 0.07
CLK3-213ENST00000563842 KLHDC9Q8NEP7 349 aa15.49■□□□□ 0.07
CLK3-213ENST00000563842 TBC1D5Q92609 795 aa15.49■□□□□ 0.07
CLK3-213ENST00000563842 RMDN3Q96TC7 470 aa15.49■□□□□ 0.07
CLK3-213ENST00000563842 UPF3AQ9H1J1 476 aaKnown RBP15.49■□□□□ 0.07
CLK3-213ENST00000563842 CCDC196A0A1B0GTZ2 297 aa15.48■□□□□ 0.07
CLK3-213ENST00000563842 GCOM1H8Y6P7 765 aaPredicted RBP15.48■□□□□ 0.07
CLK3-213ENST00000563842 NKRFO15226 690 aaKnown RBP eCLIP15.48■□□□□ 0.07
CLK3-213ENST00000563842 ZEB2O60315 1214 aa15.48■□□□□ 0.07
CLK3-213ENST00000563842 PPP1R11O60927 126 aaPredicted RBP15.48■□□□□ 0.07
CLK3-213ENST00000563842 POLR2MP0CAP2 368 aa15.48■□□□□ 0.07
CLK3-213ENST00000563842 RXRAP19793 462 aa15.48■□□□□ 0.07
CLK3-213ENST00000563842 NKX3-2P78367 333 aa15.48■□□□□ 0.07
CLK3-213ENST00000563842 COL9A3Q14050 684 aaPredicted RBP15.48■□□□□ 0.07
CLK3-213ENST00000563842 LRRC26Q2I0M4 334 aa15.48■□□□□ 0.07
CLK3-213ENST00000563842 SLC35G1Q2M3R5 365 aa15.48■□□□□ 0.07
CLK3-213ENST00000563842 GNASQ5JWF2 1037 aa15.48■□□□□ 0.07
CLK3-213ENST00000563842 ARHGEF16Q5VV41 709 aa15.48■□□□□ 0.07
CLK3-213ENST00000563842 SLC39A5Q6ZMH5 540 aa15.48■□□□□ 0.07
CLK3-213ENST00000563842 C7orf61Q8IZ16 206 aa15.48■□□□□ 0.07
CLK3-213ENST00000563842 SRBD1Q8N5C6 995 aaKnown RBP15.48■□□□□ 0.07
CLK3-213ENST00000563842 LENG1Q96BZ8 264 aaPredicted RBP15.48■□□□□ 0.07
CLK3-213ENST00000563842 TCEANC2Q96MN5 208 aa15.48■□□□□ 0.07
CLK3-213ENST00000563842 USP26Q9BXU7 913 aa15.48■□□□□ 0.07
CLK3-213ENST00000563842 KLF18A0A0U1RQI7 1052 aa15.47■□□□□ 0.07
CLK3-213ENST00000563842 RBM47A0AV96 593 aaKnown RBP15.47■□□□□ 0.07
CLK3-213ENST00000563842 PLEKHA8P1O95397 391 aa15.47■□□□□ 0.07
CLK3-213ENST00000563842 CASTP20810 708 aaKnown RBP15.47■□□□□ 0.07
CLK3-213ENST00000563842 RPS6KB1P23443 525 aa15.47■□□□□ 0.07
CLK3-213ENST00000563842 ATN1P54259 1190 aaPredicted RBP15.47■□□□□ 0.07
CLK3-213ENST00000563842 STXBP2Q15833 593 aa15.47■□□□□ 0.07
CLK3-213ENST00000563842 KCNA10Q16322 511 aa15.47■□□□□ 0.07
CLK3-213ENST00000563842 RTN1Q16799 776 aa15.47■□□□□ 0.07
CLK3-213ENST00000563842 DUSP28Q4G0W2 176 aa15.47■□□□□ 0.07
CLK3-213ENST00000563842 C1orf53Q5VUE5 145 aa15.47■□□□□ 0.07
CLK3-213ENST00000563842 Q6ZUG5 572 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms