RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 DHX38Q92620 1227 aaKnown RBP12.39□□□□□ -0.43
SF3B3-204ENST00000563739 SLC9A7Q96T83 725 aa12.39□□□□□ -0.43
SF3B3-204ENST00000563739 ZBTB40Q9NUA8 1239 aa12.39□□□□□ -0.43
SF3B3-204ENST00000563739 COG5Q9UP83 839 aa12.39□□□□□ -0.43
SF3B3-204ENST00000563739 COL4A6Q14031 1691 aa12.38□□□□□ -0.43
SF3B3-204ENST00000563739 ASB14A6NK59 587 aa12.38□□□□□ -0.43
SF3B3-204ENST00000563739 CCER2I3L3R5 266 aa12.38□□□□□ -0.43
SF3B3-204ENST00000563739 SMARCA5O60264 1052 aaPredicted RBP12.38□□□□□ -0.43
SF3B3-204ENST00000563739 NOVP48745 357 aa12.38□□□□□ -0.43
SF3B3-204ENST00000563739 DEFB103AP81534 67 aa12.38□□□□□ -0.43
SF3B3-204ENST00000563739 SKIV2LQ15477 1246 aaKnown RBP12.38□□□□□ -0.43
SF3B3-204ENST00000563739 AAK1Q2M2I8 961 aa12.38□□□□□ -0.43
SF3B3-204ENST00000563739 DUSP28Q4G0W2 176 aa12.38□□□□□ -0.43
SF3B3-204ENST00000563739 HSP90AB4PQ58FF6 505 aa12.38□□□□□ -0.43
SF3B3-204ENST00000563739 DIEXFQ68CQ4 756 aaKnown RBP12.38□□□□□ -0.43
SF3B3-204ENST00000563739 IQSEC1Q6DN90 963 aa12.38□□□□□ -0.43
SF3B3-204ENST00000563739 RPUSD2Q8IZ73 545 aaKnown RBP12.38□□□□□ -0.43
SF3B3-204ENST00000563739 COPS5Q92905 334 aa12.38□□□□□ -0.43
SF3B3-204ENST00000563739 CHMP4CQ96CF2 233 aa12.38□□□□□ -0.43
SF3B3-204ENST00000563739 GMCL1Q96IK5 515 aa12.38□□□□□ -0.43
SF3B3-204ENST00000563739 TRERF1Q96PN7 1200 aa12.38□□□□□ -0.43
SF3B3-204ENST00000563739 SEZ6LQ9BYH1 1024 aa12.38□□□□□ -0.43
SF3B3-204ENST00000563739 VTA1Q9NP79 307 aa12.38□□□□□ -0.43
SF3B3-204ENST00000563739 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.38□□□□□ -0.43
SF3B3-204ENST00000563739 HCN4Q9Y3Q4 1203 aa12.38□□□□□ -0.43
SF3B3-204ENST00000563739 KIAA1217Q5T5P2 1943 aa12.38□□□□□ -0.43
SF3B3-204ENST00000563739 NLRC5Q86WI3 1866 aa12.38□□□□□ -0.43
SF3B3-204ENST00000563739 MINDY4BA8MYZ0 360 aa12.37□□□□□ -0.43
SF3B3-204ENST00000563739 NFIBO00712 420 aa12.37□□□□□ -0.43
SF3B3-204ENST00000563739 GPAA1O43292 621 aa12.37□□□□□ -0.43
SF3B3-204ENST00000563739 PLA2G6O60733 806 aa12.37□□□□□ -0.43
SF3B3-204ENST00000563739 TTLL1O95922 423 aa12.37□□□□□ -0.43
SF3B3-204ENST00000563739 IQCF3P0C7M6 154 aa12.37□□□□□ -0.43
SF3B3-204ENST00000563739 ALAS1P13196 640 aa12.37□□□□□ -0.43
SF3B3-204ENST00000563739 ALDH5A1P51649 535 aaPredicted RBP12.37□□□□□ -0.43
SF3B3-204ENST00000563739 MKRN4PQ13434 485 aaPredicted RBP12.37□□□□□ -0.43
SF3B3-204ENST00000563739 NBPF20Q3BBV1 942 aa12.37□□□□□ -0.43
SF3B3-204ENST00000563739 TSHZ3Q63HK5 1081 aa12.37□□□□□ -0.43
SF3B3-204ENST00000563739 TRAF7Q6Q0C0 670 aa12.37□□□□□ -0.43
SF3B3-204ENST00000563739 SLC30A10Q6XR72 485 aa12.37□□□□□ -0.43
SF3B3-204ENST00000563739 STAG1Q8WVM7 1258 aa12.37□□□□□ -0.43
SF3B3-204ENST00000563739 ANKS1AQ92625 1134 aa12.37□□□□□ -0.43
SF3B3-204ENST00000563739 HLA-CQ95604 372 aa12.37□□□□□ -0.43
SF3B3-204ENST00000563739 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.37□□□□□ -0.433e-6■■■■□ 21
SF3B3-204ENST00000563739 AP5M1Q9H0R1 490 aa12.37□□□□□ -0.43
SF3B3-204ENST00000563739 TSPYL2Q9H2G4 693 aaPredicted RBP12.37□□□□□ -0.43
SF3B3-204ENST00000563739 IL17RBQ9NRM6 502 aa12.37□□□□□ -0.43
SF3B3-204ENST00000563739 PRR12Q9ULL5 1215 aa12.37□□□□□ -0.43
SF3B3-204ENST00000563739 COG6Q9Y2V7 657 aa12.37□□□□□ -0.43
SF3B3-204ENST00000563739 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.36□□□□□ -0.43
SF3B3-204ENST00000563739 PITPNM1O00562 1244 aa12.36□□□□□ -0.43
SF3B3-204ENST00000563739 NMT2O60551 498 aa12.36□□□□□ -0.43
SF3B3-204ENST00000563739 ARIH2O95376 493 aa12.36□□□□□ -0.43
SF3B3-204ENST00000563739 EDNRBP24530 442 aa12.36□□□□□ -0.43
SF3B3-204ENST00000563739 STAT2P52630 851 aa12.36□□□□□ -0.43
SF3B3-204ENST00000563739 WDR5P61964 334 aaKnown RBP12.36□□□□□ -0.43
SF3B3-204ENST00000563739 TKFCQ3LXA3 575 aa12.36□□□□□ -0.43
SF3B3-204ENST00000563739 KCTD1Q719H9 257 aa12.36□□□□□ -0.43
SF3B3-204ENST00000563739 NOL8Q76FK4 1167 aaKnown RBP12.36□□□□□ -0.43
SF3B3-204ENST00000563739 AMOTL1Q8IY63 956 aa12.36□□□□□ -0.43
SF3B3-204ENST00000563739 KBTBD3Q8NAB2 608 aa12.36□□□□□ -0.43
SF3B3-204ENST00000563739 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.36□□□□□ -0.43
SF3B3-204ENST00000563739 PHOSPHO2Q8TCD6 241 aa12.36□□□□□ -0.43
SF3B3-204ENST00000563739 APPBP2Q92624 585 aa12.36□□□□□ -0.43
SF3B3-204ENST00000563739 SEC62Q99442 399 aaKnown RBP12.36□□□□□ -0.43
SF3B3-204ENST00000563739 MKNK2Q9HBH9 465 aa12.36□□□□□ -0.43
SF3B3-204ENST00000563739 INCENPQ9NQS7 918 aa12.36□□□□□ -0.43
SF3B3-204ENST00000563739 GTPBP6O43824 516 aaPredicted RBP12.35□□□□□ -0.43
SF3B3-204ENST00000563739 RAB11FIP3O75154 756 aa12.35□□□□□ -0.43
SF3B3-204ENST00000563739 FDX1P10109 184 aa12.35□□□□□ -0.43
SF3B3-204ENST00000563739 IL9P15248 144 aa12.35□□□□□ -0.43
SF3B3-204ENST00000563739 MCCP23508 829 aa12.35□□□□□ -0.43
SF3B3-204ENST00000563739 RFC2P35250 354 aa12.35□□□□□ -0.43
SF3B3-204ENST00000563739 KIAA1211Q6ZU35 1233 aa12.35□□□□□ -0.43
SF3B3-204ENST00000563739 FAM160B2Q86V87 743 aa12.35□□□□□ -0.43
SF3B3-204ENST00000563739 FAM178BQ8IXR5 827 aa12.35□□□□□ -0.43
SF3B3-204ENST00000563739 CLEC4DQ8WXI8 215 aa12.35□□□□□ -0.43
SF3B3-204ENST00000563739 WNT8BQ93098 351 aa12.35□□□□□ -0.43
SF3B3-204ENST00000563739 BCL11AQ9H165 835 aa12.35□□□□□ -0.43
SF3B3-204ENST00000563739 RANBP17Q9H2T7 1088 aaKnown RBP12.35□□□□□ -0.43
SF3B3-204ENST00000563739 UBE2ZQ9H832 354 aaPredicted RBP12.35□□□□□ -0.43
SF3B3-204ENST00000563739 MYO7AQ13402 2215 aa12.34□□□□□ -0.43
SF3B3-204ENST00000563739 A6NJR5 290 aa12.34□□□□□ -0.43
SF3B3-204ENST00000563739 NBNO60934 754 aa12.34□□□□□ -0.43
SF3B3-204ENST00000563739 MYL3P08590 195 aa12.34□□□□□ -0.43
SF3B3-204ENST00000563739 RBL2Q08999 1139 aa12.34□□□□□ -0.43
SF3B3-204ENST00000563739 BAATQ14032 418 aaPredicted RBP12.34□□□□□ -0.43
SF3B3-204ENST00000563739 MBTPS1Q14703 1052 aa12.34□□□□□ -0.43
SF3B3-204ENST00000563739 TRIM71Q2Q1W2 868 aaKnown RBP12.34□□□□□ -0.43
SF3B3-204ENST00000563739 TTBK2Q6IQ55 1244 aa12.34□□□□□ -0.43
SF3B3-204ENST00000563739 NSMFQ6X4W1 530 aa12.34□□□□□ -0.43
SF3B3-204ENST00000563739 IFNL3Q8IZI9 196 aa12.34□□□□□ -0.43
SF3B3-204ENST00000563739 KAT2BQ92831 832 aa12.34□□□□□ -0.43
SF3B3-204ENST00000563739 MTG1Q9BT17 334 aaPredicted RBP12.34□□□□□ -0.43
SF3B3-204ENST00000563739 WDR11Q9BZH6 1224 aa12.34□□□□□ -0.43
SF3B3-204ENST00000563739 SUGCTQ9HAC7 445 aa12.34□□□□□ -0.43
SF3B3-204ENST00000563739 POLR3EQ9NVU0 708 aa12.34□□□□□ -0.43
SF3B3-204ENST00000563739 TECTAO75443 2155 aa12.34□□□□□ -0.43
SF3B3-204ENST00000563739 LINC01553A4QN01 128 aa12.33□□□□□ -0.44
SF3B3-204ENST00000563739 ZEB2O60315 1214 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms