RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 PDE4DIPQ5VU43 2346 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 FRMPD2Q68DX3 1309 aaPredicted RBP10.19□□□□□ -0.78
VPS39-207ENST00000563692 CYTH3O43739 400 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 RAD21O60216 631 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 LIG1P18858 919 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 SLC1A4P43007 532 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 NAPAP54920 295 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 CCNA1P78396 465 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 FAM160A1Q05DH4 1040 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 NR5A1Q13285 461 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 SEPT2Q15019 361 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 PTPAQ15257 358 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 SLFN13Q68D06 897 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 KRI1Q8N9T8 703 aaKnown RBP10.19□□□□□ -0.78
VPS39-207ENST00000563692 FSIP1Q8NA03 581 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 DAGLBQ8NCG7 672 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 GMCL1P1Q8NEA9 526 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 PXYLP1Q8TE99 480 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 SOCS4Q8WXH5 440 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 C12orf42Q96LP6 360 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 P2RX7Q99572 595 aaKnown RBP10.19□□□□□ -0.78
VPS39-207ENST00000563692 PAGR1Q9BTK6 254 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 UBA5Q9GZZ9 404 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 RNF208Q9H0X6 261 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 CLSTN2Q9H4D0 955 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 GPCPD1Q9NPB8 672 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 EMILIN3Q9NT22 766 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 FAM13BQ9NYF5 915 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 MORF4L1Q9UBU8 362 aa10.19□□□□□ -0.78
VPS39-207ENST00000563692 MORC2Q9Y6X9 1032 aaPredicted RBP10.19□□□□□ -0.78
VPS39-207ENST00000563692 PNMA6FA0A0J9YX94 578 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 CCDC194A0A1B0GVG4 234 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 SMCO2A6NFE2 343 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 F5H6K3 240 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 STXBP3O00186 592 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 NR1I2O75469 434 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 INHAP05111 366 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 CCDC192P0DO97 292 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 CCL5P13501 91 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 VCAM1P19320 739 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 ATP2B1P20020 1258 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 MARCKSP29966 332 aaPredicted RBP10.18□□□□□ -0.78
VPS39-207ENST00000563692 MAPK4P31152 587 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 KLRC3Q07444 240 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 TRAF1Q13077 416 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 MTFR1Q15390 333 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 WWC2Q6AWC2 1192 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 SASS6Q6UVJ0 657 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 GAS2L3Q86XJ1 694 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 HOMER1Q86YM7 354 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 ZNF579Q8NAF0 562 aaKnown RBP10.18□□□□□ -0.78
VPS39-207ENST00000563692 ACER1Q8TDN7 264 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 OXER1Q8TDS5 423 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 GPKOWQ92917 476 aaPredicted RBP eCLIP10.18□□□□□ -0.78
VPS39-207ENST00000563692 CCDC34Q96HJ3 373 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 GMCL1Q96IK5 515 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 PIGSQ96S52 555 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 NUDT12Q9BQG2 462 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 SDF4Q9BRK5 362 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 ZMYND12Q9H0C1 365 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 GLT8D2Q9H1C3 349 aa10.18□□□□□ -0.78
VPS39-207ENST00000563692 PHIPQ8WWQ0 1821 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 CAVIN2O95810 425 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 GJB1P08034 283 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 XRCC6P12956 609 aaKnown RBP eCLIP10.17□□□□□ -0.78
VPS39-207ENST00000563692 ELNP15502 786 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 TOB1P50616 345 aaPredicted RBP10.17□□□□□ -0.78
VPS39-207ENST00000563692 MRPL12P52815 198 aaKnown RBP10.17□□□□□ -0.78
VPS39-207ENST00000563692 ERVK-9P63128 1117 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 ERVK-24P63145 666 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 CAMK4Q16566 473 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 TTC38Q5R3I4 469 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 WDR78Q5VTH9 848 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 PPP1R18Q6NYC8 613 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 PIK3AP1Q6ZUJ8 805 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 KRT25Q7Z3Z0 450 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 ADGRF4Q8IZF3 695 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 ENGASEQ8NFI3 743 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 LPAR1Q92633 364 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 TNFRSF25Q93038 417 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 FERMT2Q96AC1 680 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 TIGD1Q96MW7 591 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 TANGO6Q9C0B7 1094 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 RPAP3Q9H6T3 665 aaPredicted RBP10.17□□□□□ -0.78
VPS39-207ENST00000563692 GOPCQ9HD26 462 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 HOOK1Q9UJC3 728 aaKnown RBP10.17□□□□□ -0.78
VPS39-207ENST00000563692 RABGAP1Q9Y3P9 1069 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 SRPRBQ9Y5M8 271 aaKnown RBP10.17□□□□□ -0.78
VPS39-207ENST00000563692 PTPRFP10586 1907 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 TCHHQ07283 1943 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 SIPA1L1O43166 1804 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 ATAD5Q96QE3 1844 aa10.17□□□□□ -0.78
VPS39-207ENST00000563692 LOC285556D6RIA3 1793 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 HTTP42858 3142 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 A0A1B0GVL5 298 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 ESYT2A0FGR8 921 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 ZBTB5O15062 677 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 HMGCRP04035 888 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 BMP3P12645 472 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 CAPN2P17655 700 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms