RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 PDGFCQ9NRA1 345 aa19.64■□□□□ 0.73
CLK3-210ENST00000563112 RBM8AQ9Y5S9 174 aaKnown RBP19.64■□□□□ 0.73
CLK3-210ENST00000563112 DDX49Q9Y6V7 483 aaKnown RBP19.64■□□□□ 0.73
CLK3-210ENST00000563112 MROH7Q68CQ1 1323 aa19.63■□□□□ 0.73
CLK3-210ENST00000563112 KLRF2D3W0D1 207 aa19.63■□□□□ 0.73
CLK3-210ENST00000563112 DYNC1LI2O43237 492 aaPredicted RBP19.63■□□□□ 0.73
CLK3-210ENST00000563112 SMPD1P17405 629 aa19.63■□□□□ 0.73
CLK3-210ENST00000563112 PDE4DQ08499 809 aa19.63■□□□□ 0.73
CLK3-210ENST00000563112 WTAPQ15007 396 aa19.63■□□□□ 0.73
CLK3-210ENST00000563112 QRICH1Q2TAL8 776 aa19.63■□□□□ 0.73
CLK3-210ENST00000563112 LRIT3Q3SXY7 679 aa19.63■□□□□ 0.73
CLK3-210ENST00000563112 JMJD4Q9H9V9 463 aa19.63■□□□□ 0.73
CLK3-210ENST00000563112 GNEQ9Y223 722 aaKnown RBP19.63■□□□□ 0.73
CLK3-210ENST00000563112 MRPL11Q9Y3B7 192 aaKnown RBP19.63■□□□□ 0.73
CLK3-210ENST00000563112 Q9Y3F1 56 aa19.63■□□□□ 0.73
CLK3-210ENST00000563112 A0A0U1RQG5 324 aaPredicted RBP19.62■□□□□ 0.73
CLK3-210ENST00000563112 SOX1O00570 391 aaPredicted RBP19.62■□□□□ 0.73
CLK3-210ENST00000563112 CABYRO75952 493 aa19.62■□□□□ 0.73
CLK3-210ENST00000563112 IRX5P78411 483 aaPredicted RBP19.62■□□□□ 0.73
CLK3-210ENST00000563112 BEX3Q00994 111 aa19.62■□□□□ 0.73
CLK3-210ENST00000563112 FSCN1Q16658 493 aaKnown RBP19.62■□□□□ 0.73
CLK3-210ENST00000563112 ANKRD33Q7Z3H0 272 aa19.62■□□□□ 0.73
CLK3-210ENST00000563112 SH3RF1Q7Z6J0 888 aa19.62■□□□□ 0.73
CLK3-210ENST00000563112 TMEM39AQ9NV64 488 aa19.62■□□□□ 0.73
CLK3-210ENST00000563112 LCTP09848 1927 aa19.62■□□□□ 0.73
CLK3-210ENST00000563112 MYH6P13533 1939 aa19.61■□□□□ 0.73
CLK3-210ENST00000563112 TRIM43BA6NCK2 446 aa19.61■□□□□ 0.73
CLK3-210ENST00000563112 CTAGE5O15320 804 aa19.61■□□□□ 0.73
CLK3-210ENST00000563112 RAG1P15918 1043 aa19.61■□□□□ 0.73
CLK3-210ENST00000563112 TRAF1Q13077 416 aa19.61■□□□□ 0.73
CLK3-210ENST00000563112 DUSP28Q4G0W2 176 aa19.61■□□□□ 0.73
CLK3-210ENST00000563112 BMP2KLQ5H9B9 411 aa19.61■□□□□ 0.73
CLK3-210ENST00000563112 TMEM67Q5HYA8 995 aa19.61■□□□□ 0.73
CLK3-210ENST00000563112 STAG2Q8N3U4 1231 aa19.61■□□□□ 0.73
CLK3-210ENST00000563112 BADQ92934 168 aa19.61■□□□□ 0.73
CLK3-210ENST00000563112 TRIM43Q96BQ3 446 aaPredicted RBP19.61■□□□□ 0.73
CLK3-210ENST00000563112 LRCH3Q96II8 777 aa19.61■□□□□ 0.73
CLK3-210ENST00000563112 ESYT1Q9BSJ8 1104 aa19.61■□□□□ 0.73
CLK3-210ENST00000563112 AMNQ9BXJ7 453 aa19.61■□□□□ 0.73
CLK3-210ENST00000563112 WDR11Q9BZH6 1224 aa19.61■□□□□ 0.73
CLK3-210ENST00000563112 MAD2L2Q9UI95 211 aa19.61■□□□□ 0.73
CLK3-210ENST00000563112 LRRC37A2A6NM11 1700 aa19.6■□□□□ 0.73
CLK3-210ENST00000563112 PALM3A6NDB9 673 aaPredicted RBP19.6■□□□□ 0.73
CLK3-210ENST00000563112 ARVCFO00192 962 aa19.6■□□□□ 0.73
CLK3-210ENST00000563112 KIAA0355O15063 1070 aa19.6■□□□□ 0.73
CLK3-210ENST00000563112 GRM4Q14833 912 aa19.6■□□□□ 0.73
CLK3-210ENST00000563112 STOX1Q6ZVD7 989 aa19.6■□□□□ 0.73
CLK3-210ENST00000563112 CATIPQ7Z7H3 387 aa19.6■□□□□ 0.73
CLK3-210ENST00000563112 RBM47A0AV96 593 aaKnown RBP19.59■□□□□ 0.73
CLK3-210ENST00000563112 TLR3O15455 904 aaKnown RBP19.59■□□□□ 0.73
CLK3-210ENST00000563112 CDK7P50613 346 aa19.59■□□□□ 0.73
CLK3-210ENST00000563112 FAAP100Q0VG06 881 aa19.59■□□□□ 0.73
CLK3-210ENST00000563112 BRDTQ58F21 947 aaPredicted RBP19.59■□□□□ 0.73
CLK3-210ENST00000563112 GPR153Q6NV75 609 aa19.59■□□□□ 0.73
CLK3-210ENST00000563112 CASC1Q6TDU7 716 aa19.59■□□□□ 0.73
CLK3-210ENST00000563112 CXCL17Q6UXB2 119 aa19.59■□□□□ 0.73
CLK3-210ENST00000563112 CHST3Q7LGC8 479 aa19.59■□□□□ 0.73
CLK3-210ENST00000563112 NSUN6Q8TEA1 469 aaKnown RBP19.59■□□□□ 0.73
CLK3-210ENST00000563112 TBC1D5Q92609 795 aa19.59■□□□□ 0.73
CLK3-210ENST00000563112 LSG1Q9H089 658 aaKnown RBP19.59■□□□□ 0.73
CLK3-210ENST00000563112 TAF6LQ9Y6J9 622 aa19.59■□□□□ 0.73
CLK3-210ENST00000563112 LTBP2Q14767 1821 aa19.58■□□□□ 0.73
CLK3-210ENST00000563112 ZBTB5O15062 677 aa19.58■□□□□ 0.72
CLK3-210ENST00000563112 NKRFO15226 690 aaKnown RBP eCLIP19.58■□□□□ 0.72
CLK3-210ENST00000563112 EDNRBP24530 442 aa19.58■□□□□ 0.72
CLK3-210ENST00000563112 MB21D2Q8IYB1 491 aaPredicted RBP19.58■□□□□ 0.72
CLK3-210ENST00000563112 SYTL5Q8TDW5 730 aaPredicted RBP19.58■□□□□ 0.72
CLK3-210ENST00000563112 SCFD2Q8WU76 684 aa19.58■□□□□ 0.72
CLK3-210ENST00000563112 MTA3Q9BTC8 594 aa19.58■□□□□ 0.72
CLK3-210ENST00000563112 SEZ6LQ9BYH1 1024 aa19.58■□□□□ 0.72
CLK3-210ENST00000563112 ANO2Q9NQ90 1003 aa19.58■□□□□ 0.72
CLK3-210ENST00000563112 CFBP00751 764 aa19.57■□□□□ 0.72
CLK3-210ENST00000563112 CPT1AP50416 773 aa19.57■□□□□ 0.72
CLK3-210ENST00000563112 PPP2R5BQ15173 497 aa19.57■□□□□ 0.72
CLK3-210ENST00000563112 IGDCC4Q8TDY8 1250 aa19.57■□□□□ 0.72
CLK3-210ENST00000563112 MTMR8Q96EF0 704 aa19.57■□□□□ 0.72
CLK3-210ENST00000563112 TAAR1Q96RJ0 339 aa19.57■□□□□ 0.72
CLK3-210ENST00000563112 IWS1Q96ST2 819 aa19.57■□□□□ 0.72
CLK3-210ENST00000563112 RMDN3Q96TC7 470 aa19.57■□□□□ 0.72
CLK3-210ENST00000563112 POLR3EQ9NVU0 708 aa19.57■□□□□ 0.72
CLK3-210ENST00000563112 PCDHA1Q9Y5I3 950 aa19.57■□□□□ 0.72
CLK3-210ENST00000563112 MCM5P33992 734 aa19.56■□□□□ 0.72
CLK3-210ENST00000563112 ANTXR2P58335 489 aa19.56■□□□□ 0.72
CLK3-210ENST00000563112 TROAPQ12815 778 aa19.56■□□□□ 0.72
CLK3-210ENST00000563112 TTLL4Q14679 1199 aa19.56■□□□□ 0.72
CLK3-210ENST00000563112 TMEM63BQ5T3F8 832 aa19.56■□□□□ 0.72
CLK3-210ENST00000563112 ARHGEF16Q5VV41 709 aa19.56■□□□□ 0.72
CLK3-210ENST00000563112 HOMER1Q86YM7 354 aa19.56■□□□□ 0.72
CLK3-210ENST00000563112 TMTC2Q8N394 836 aa19.56■□□□□ 0.72
CLK3-210ENST00000563112 OR6J1Q8NGC5 347 aa19.56■□□□□ 0.72
CLK3-210ENST00000563112 CCDC136Q96JN2 1154 aa19.56■□□□□ 0.72
CLK3-210ENST00000563112 RIOX1Q9H6W3 641 aa19.56■□□□□ 0.72
CLK3-210ENST00000563112 SENP2Q9HC62 589 aa19.56■□□□□ 0.72
CLK3-210ENST00000563112 GPHNQ9NQX3 736 aaPredicted RBP19.56■□□□□ 0.72
CLK3-210ENST00000563112 MAP3K20Q9NYL2 800 aaKnown RBP19.56■□□□□ 0.72
CLK3-210ENST00000563112 SLC27A2O14975 620 aa19.55■□□□□ 0.72
CLK3-210ENST00000563112 PRC1O43663 620 aa19.55■□□□□ 0.72
CLK3-210ENST00000563112 TIMP1P01033 207 aa19.55■□□□□ 0.72
CLK3-210ENST00000563112 TXNP10599 105 aaKnown RBP19.55■□□□□ 0.72
CLK3-210ENST00000563112 PTGS1P23219 599 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms