RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 CCDC85BQ15834 202 aaPredicted RBP22.38■■□□□ 1.17
VPS35-202ENST00000561713 FSCN1Q16658 493 aaKnown RBP22.38■■□□□ 1.17
VPS35-202ENST00000561713 PURBQ96QR8 312 aaKnown RBP22.38■■□□□ 1.17
VPS35-202ENST00000561713 NKX2-4Q9H2Z4 354 aa22.38■■□□□ 1.17
VPS35-202ENST00000561713 PDGFCQ9NRA1 345 aa22.38■■□□□ 1.17
VPS35-202ENST00000561713 ASB14A6NK59 587 aa22.37■■□□□ 1.17
VPS35-202ENST00000561713 FGBP02675 491 aa22.37■■□□□ 1.17
VPS35-202ENST00000561713 SMPD1P17405 629 aa22.37■■□□□ 1.17
VPS35-202ENST00000561713 RAB30Q15771 203 aa22.37■■□□□ 1.17
VPS35-202ENST00000561713 TMEM63BQ5T3F8 832 aa22.37■■□□□ 1.17
VPS35-202ENST00000561713 CWC27Q6UX04 472 aaKnown RBP22.37■■□□□ 1.17
VPS35-202ENST00000561713 OTOP2Q7RTS6 562 aa22.37■■□□□ 1.17
VPS35-202ENST00000561713 DCAF4Q8WV16 495 aa22.37■■□□□ 1.17
VPS35-202ENST00000561713 ATXN2LQ8WWM7 1075 aaKnown RBP22.37■■□□□ 1.17
VPS35-202ENST00000561713 TRPV6Q9H1D0 765 aa22.37■■□□□ 1.17
VPS35-202ENST00000561713 YBX2Q9Y2T7 364 aaKnown RBP22.37■■□□□ 1.17
VPS35-202ENST00000561713 DYNC1LI2O43237 492 aaPredicted RBP22.36■■□□□ 1.17
VPS35-202ENST00000561713 PLA2G6O60733 806 aa22.36■■□□□ 1.17
VPS35-202ENST00000561713 CABYRO75952 493 aa22.36■■□□□ 1.17
VPS35-202ENST00000561713 TOP1P11387 765 aaKnown RBP22.36■■□□□ 1.17
VPS35-202ENST00000561713 IGFBP4P22692 258 aa22.36■■□□□ 1.17
VPS35-202ENST00000561713 CCL23P55773 120 aa22.36■■□□□ 1.17
VPS35-202ENST00000561713 AAMPQ13685 434 aa22.36■■□□□ 1.17
VPS35-202ENST00000561713 SYDE2Q5VT97 1194 aa22.36■■□□□ 1.17
VPS35-202ENST00000561713 NSMFQ6X4W1 530 aa22.36■■□□□ 1.17
VPS35-202ENST00000561713 EEPD1Q7L9B9 569 aa22.36■■□□□ 1.17
VPS35-202ENST00000561713 ZKSCAN3Q9BRR0 538 aa22.36■■□□□ 1.17
VPS35-202ENST00000561713 AP5M1Q9H0R1 490 aa22.36■■□□□ 1.17
VPS35-202ENST00000561713 DIAPH3Q9NSV4 1193 aa22.36■■□□□ 1.17
VPS35-202ENST00000561713 MYO9BQ13459 2157 aa22.35■■□□□ 1.17
VPS35-202ENST00000561713 PSMC6P62333 389 aa22.35■■□□□ 1.17
VPS35-202ENST00000561713 TKFCQ3LXA3 575 aa22.35■■□□□ 1.17
VPS35-202ENST00000561713 TAPT1Q6NXT6 567 aa22.35■■□□□ 1.17
VPS35-202ENST00000561713 FBXO16Q8IX29 292 aaPredicted RBP22.35■■□□□ 1.17
VPS35-202ENST00000561713 ASB2Q96Q27 587 aa22.35■■□□□ 1.17
VPS35-202ENST00000561713 NOC4LQ9BVI4 516 aaKnown RBP22.35■■□□□ 1.17
VPS35-202ENST00000561713 RANBP17Q9H2T7 1088 aaKnown RBP22.35■■□□□ 1.17
VPS35-202ENST00000561713 SLC28A3Q9HAS3 691 aa22.35■■□□□ 1.17
VPS35-202ENST00000561713 THEGQ9P2T0 379 aa22.35■■□□□ 1.17
VPS35-202ENST00000561713 B4GALT4O60513 344 aa22.34■■□□□ 1.17
VPS35-202ENST00000561713 PDHBP11177 359 aa22.34■■□□□ 1.17
VPS35-202ENST00000561713 IRX6P78412 446 aaPredicted RBP22.34■■□□□ 1.17
VPS35-202ENST00000561713 MFSD6Q6ZSS7 791 aa22.34■■□□□ 1.17
VPS35-202ENST00000561713 WNT8AQ9H1J5 351 aa22.34■■□□□ 1.17
VPS35-202ENST00000561713 MTIF3Q9H2K0 278 aaKnown RBP22.34■■□□□ 1.17
VPS35-202ENST00000561713 OSBPL3Q9H4L5 887 aa22.34■■□□□ 1.17
VPS35-202ENST00000561713 CYP39A1Q9NYL5 469 aa22.34■■□□□ 1.17
VPS35-202ENST00000561713 GBF1Q92538 1859 aa22.33■■□□□ 1.17
VPS35-202ENST00000561713 TRANK1O15050 2925 aa22.33■■□□□ 1.17
VPS35-202ENST00000561713 NFIBO00712 420 aa22.33■■□□□ 1.17
VPS35-202ENST00000561713 ZEB2O60315 1214 aa22.33■■□□□ 1.17
VPS35-202ENST00000561713 ICAM1P05362 532 aa22.33■■□□□ 1.17
VPS35-202ENST00000561713 RABGGTBP53611 331 aa22.33■■□□□ 1.17
VPS35-202ENST00000561713 IQSEC1Q6DN90 963 aa22.33■■□□□ 1.17
VPS35-202ENST00000561713 IL25Q9H293 177 aa22.33■■□□□ 1.17
VPS35-202ENST00000561713 CPVLQ9H3G5 476 aa22.33■■□□□ 1.17
VPS35-202ENST00000561713 COL9A1P20849 921 aa22.32■■□□□ 1.16
VPS35-202ENST00000561713 SLC30A10Q6XR72 485 aa22.32■■□□□ 1.16
VPS35-202ENST00000561713 ADAMTS19Q8TE59 1207 aa22.32■■□□□ 1.16
VPS35-202ENST00000561713 VWCEQ96DN2 955 aa22.32■■□□□ 1.16
VPS35-202ENST00000561713 TCP11L1Q9NUJ3 509 aa22.32■■□□□ 1.16
VPS35-202ENST00000561713 SUPT16HQ9Y5B9 1047 aaKnown RBP22.32■■□□□ 1.16
VPS35-202ENST00000561713 BDP1A6H8Y1 2624 aa22.32■■□□□ 1.16
VPS35-202ENST00000561713 GOLGA8HP0CJ92 632 aa22.31■■□□□ 1.16
VPS35-202ENST00000561713 MYOGP15173 224 aa22.31■■□□□ 1.16
VPS35-202ENST00000561713 PDE4AP27815 886 aa22.31■■□□□ 1.16
VPS35-202ENST00000561713 MFAP1P55081 439 aaKnown RBP22.31■■□□□ 1.16
VPS35-202ENST00000561713 MRPS5P82675 430 aaKnown RBP22.31■■□□□ 1.16
VPS35-202ENST00000561713 ZNF543Q08ER8 600 aa22.31■■□□□ 1.16
VPS35-202ENST00000561713 BTNL9Q6UXG8 535 aa22.31■■□□□ 1.16
VPS35-202ENST00000561713 SCLYQ96I15 445 aa22.31■■□□□ 1.16
VPS35-202ENST00000561713 SEZ6LQ9BYH1 1024 aa22.31■■□□□ 1.16
VPS35-202ENST00000561713 Q9Y3F1 56 aa22.31■■□□□ 1.16
VPS35-202ENST00000561713 KIAA1211Q6ZU35 1233 aa22.3■■□□□ 1.16
VPS35-202ENST00000561713 TICAM2Q86XR7 235 aa22.3■■□□□ 1.16
VPS35-202ENST00000561713 ALDH8A1Q9H2A2 487 aaPredicted RBP22.3■■□□□ 1.16
VPS35-202ENST00000561713 SLC4A7Q9Y6M7 1214 aa22.3■■□□□ 1.16
VPS35-202ENST00000561713 PTPDC1A2A3K4 754 aa22.29■■□□□ 1.16
VPS35-202ENST00000561713 B4E1Z4 1266 aa22.29■■□□□ 1.16
VPS35-202ENST00000561713 KDM4AO75164 1064 aa22.29■■□□□ 1.16
VPS35-202ENST00000561713 BAATQ14032 418 aaPredicted RBP22.29■■□□□ 1.16
VPS35-202ENST00000561713 RPUSD2Q8IZ73 545 aaKnown RBP22.29■■□□□ 1.16
VPS35-202ENST00000561713 MORC4Q8TE76 937 aa22.29■■□□□ 1.16
VPS35-202ENST00000561713 ESR2Q92731 530 aa22.29■■□□□ 1.16
VPS35-202ENST00000561713 RNF41Q9H4P4 317 aaPredicted RBP22.29■■□□□ 1.16
VPS35-202ENST00000561713 VTA1Q9NP79 307 aa22.29■■□□□ 1.16
VPS35-202ENST00000561713 RAPGEFL1Q9UHV5 662 aa22.29■■□□□ 1.16
VPS35-202ENST00000561713 ZBBXA8MT70 800 aa22.28■■□□□ 1.16
VPS35-202ENST00000561713 ZNF213O14771 459 aa22.28■■□□□ 1.16
VPS35-202ENST00000561713 GSPT1P15170 499 aaKnown RBP22.28■■□□□ 1.16
VPS35-202ENST00000561713 PPP2R2DQ66LE6 453 aa22.28■■□□□ 1.16
VPS35-202ENST00000561713 UHRF1Q96T88 793 aaPredicted RBP22.28■■□□□ 1.16
VPS35-202ENST00000561713 TRMT13Q9NUP7 481 aaKnown RBP22.28■■□□□ 1.16
VPS35-202ENST00000561713 SNHG28P0DPA3 235 aa22.27■■□□□ 1.16
VPS35-202ENST00000561713 PCP11498 1178 aaKnown RBP22.27■■□□□ 1.16
VPS35-202ENST00000561713 CYP2C9P11712 490 aa22.27■■□□□ 1.16
VPS35-202ENST00000561713 CALML3P27482 149 aa22.27■■□□□ 1.16
VPS35-202ENST00000561713 ALDH5A1P51649 535 aaPredicted RBP22.27■■□□□ 1.16
VPS35-202ENST00000561713 USH1GQ495M9 461 aa22.27■■□□□ 1.16
VPS35-202ENST00000561713 DUSP28Q4G0W2 176 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms