RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 KCNV2Q8TDN2 545 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 PNMA3Q9UL41 463 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 HPS5Q9UPZ3 1129 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 SCN11AQ9UI33 1791 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 KLRG2A4D1S0 409 aaPredicted RBP6.12□□□□□ -1.43
VPS13C-209ENST00000560637 OR52Z1P0C646 297 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 MTIF2P46199 727 aaKnown RBP6.12□□□□□ -1.43
VPS13C-209ENST00000560637 CDR1P51861 262 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 CUL4AQ13619 759 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 PFKFB3Q16875 520 aaPredicted RBP6.12□□□□□ -1.43
VPS13C-209ENST00000560637 XKR9Q5GH70 373 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 FAM160B2Q86V87 743 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 SGMS1Q86VZ5 419 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 ERO1BQ86YB8 467 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 MCF2L2Q86YR7 1114 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 AOPEPQ8N6M6 819 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 ZC3H15Q8WU90 426 aaKnown RBP6.12□□□□□ -1.43
VPS13C-209ENST00000560637 SYMPKQ92797 1274 aaKnown RBP6.12□□□□□ -1.43
VPS13C-209ENST00000560637 P2RX7Q99572 595 aaKnown RBP6.12□□□□□ -1.43
VPS13C-209ENST00000560637 FAM49AQ9H0Q0 323 aaPredicted RBP6.12□□□□□ -1.43
VPS13C-209ENST00000560637 EFCC1Q9HA90 598 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 DDX19AQ9NUU7 478 aaKnown RBP6.12□□□□□ -1.43
VPS13C-209ENST00000560637 CEP290O15078 2479 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 GAKO14976 1311 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 FDPSP14324 419 aaKnown RBP6.12□□□□□ -1.43
VPS13C-209ENST00000560637 PFKFB1P16118 471 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 NDUFA8P51970 172 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 LONRF3Q496Y0 759 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 LUZP1Q86V48 1076 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 DCAF4Q8WV16 495 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 IDI2Q9BXS1 227 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 NYAP2Q9P242 653 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 FEM1BQ9UK73 627 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 SALL1Q9NSC2 1324 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 RPAP1Q9BWH6 1393 aaPredicted RBP6.12□□□□□ -1.43
VPS13C-209ENST00000560637 BTAF1O14981 1849 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 FOXP2O15409 715 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 EPB41L2O43491 1005 aaKnown RBP6.11□□□□□ -1.43
VPS13C-209ENST00000560637 PTPRAP18433 802 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 RPS6P62753 249 aaKnown RBP6.11□□□□□ -1.43
VPS13C-209ENST00000560637 ARHGAP4P98171 946 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 AMPD3Q01432 767 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 FILIP1LQ4L180 1135 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 FAM102BQ5T8I3 360 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 CEP135Q66GS9 1140 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 FAM83AQ86UY5 434 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 FAM163AQ96GL9 167 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-209ENST00000560637 TEX13BQ9BXU2 312 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 ANO10Q9NW15 660 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 TACC3Q9Y6A5 838 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 PAPPAQ13219 1627 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 BMP15O95972 392 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 DNA2P51530 1060 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 ARID5AQ03989 594 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 LRRC41Q15345 812 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 MTERF2Q49AM1 385 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 USP50Q70EL3 339 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-209ENST00000560637 SV2BQ7L1I2 683 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 MYCT1Q8N699 235 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 BANK1Q8NDB2 785 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 MMP19Q99542 508 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 TMX1Q9H3N1 280 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 SEPT9Q9UHD8 586 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-209ENST00000560637 MAD2L2Q9UI95 211 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 C4BP0C0L5 1744 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 FZD9O00144 591 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 PDHXO00330 501 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 FCER1AP12319 257 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 SEC23AQ15436 765 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 USP49Q70CQ1 688 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 FASTKD5Q7L8L6 764 aaKnown RBP6.11□□□□□ -1.43
VPS13C-209ENST00000560637 APOL6Q9BWW8 343 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 DNAJC18Q9H819 358 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 ACAD9Q9H845 621 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 GRPEL1Q9HAV7 217 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 TMEM63CQ9P1W3 806 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 DNM3Q9UQ16 869 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 COL1A1P02452 1464 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-209ENST00000560637 C5P01031 1676 aa6.11□□□□□ -1.43
VPS13C-209ENST00000560637 RFX7Q2KHR2 1363 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 WDR46O15213 610 aaKnown RBP6.1□□□□□ -1.43
VPS13C-209ENST00000560637 IPO7O95373 1038 aaKnown RBP6.1□□□□□ -1.43
VPS13C-209ENST00000560637 PDIA4P13667 645 aaKnown RBP6.1□□□□□ -1.43
VPS13C-209ENST00000560637 KLHL40Q2TBA0 621 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 BRDTQ58F21 947 aaPredicted RBP6.1□□□□□ -1.43
VPS13C-209ENST00000560637 DCAF17Q5H9S7 520 aaPredicted RBP6.1□□□□□ -1.43
VPS13C-209ENST00000560637 CHADLQ6NUI6 762 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 C15orf52Q6ZUT6 534 aaKnown RBP6.1□□□□□ -1.43
VPS13C-209ENST00000560637 GPBP1Q86WP2 473 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 CYP2W1Q8TAV3 490 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 RAET1EQ8TD07 263 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 TAAR1Q96RJ0 339 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 SLC39A2Q9NP94 309 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 LMBRD1Q9NUN5 540 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 BARHL2Q9NY43 387 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 RGL1Q9NZL6 768 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 PUF60Q9UHX1 559 aaKnown RBP6.1□□□□□ -1.43
VPS13C-209ENST00000560637 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.1□□□□□ -1.43
VPS13C-209ENST00000560637 LRRIQ4A6NIV6 560 aa6.1□□□□□ -1.43
VPS13C-209ENST00000560637 CYTH3O43739 400 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms